Wall clock time and date at job start Tue Mar 31 2020 19:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.39051 * 2 1 4 4 S 1.83398 * 110.33975 * 122.23210 * 2 1 3 5 5 C 1.83992 * 95.85248 * 138.62013 * 4 2 1 6 6 C 1.55155 * 100.90585 * 324.64813 * 5 4 2 7 7 C 1.52933 * 108.96467 * 41.43842 * 6 5 4 8 8 H 1.08993 * 108.77772 * 209.18101 * 7 6 5 9 9 N 1.46502 * 108.88553 * 90.69411 * 7 6 5 10 10 C 1.34773 * 120.00317 * 82.02359 * 9 7 6 11 11 O 1.21361 * 119.99749 * 359.97438 * 10 9 7 12 12 C 1.49365 * 120.00424 * 180.02562 * 10 9 7 13 13 O 1.21361 * 119.99786 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99815 * 179.97438 * 12 10 9 15 15 C 1.39116 * 119.99596 * 185.14660 * 14 12 10 16 16 C 1.39703 * 119.57941 * 174.66444 * 15 14 12 17 17 C 1.38654 * 119.49652 * 180.02562 * 16 15 14 18 18 C 1.38342 * 118.67131 * 0.02562 * 17 16 15 19 19 C 1.40596 * 119.13567 * 0.02562 * 18 17 16 20 20 C 1.41339 * 119.78861 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99820 * 359.97438 * 20 19 18 22 22 C 1.40029 * 120.00073 * 179.97438 * 20 19 18 23 23 N 1.30736 * 120.00308 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99801 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46936 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47199 * 120.00307 * 24 22 20 27 27 H 1.48504 * 109.46815 * 240.00406 * 24 22 20 28 28 N 1.31942 * 119.57926 * 354.69509 * 15 14 12 29 29 H 1.09000 * 109.47490 * 182.22655 * 1 2 3 30 30 H 1.09005 * 109.46995 * 302.22277 * 1 2 3 31 31 H 1.08999 * 109.47620 * 62.22371 * 1 2 3 32 32 H 1.08994 * 111.13097 * 82.55610 * 5 4 2 33 33 H 1.09001 * 111.13222 * 206.69702 * 5 4 2 34 34 H 1.09009 * 109.60156 * 281.50708 * 6 5 4 35 35 H 1.09001 * 109.60294 * 161.37934 * 6 5 4 36 36 H 0.96998 * 119.99871 * 262.01618 * 9 7 6 37 37 H 0.96991 * 120.00680 * 5.15449 * 14 12 10 38 38 H 1.08004 * 120.25475 * 0.05143 * 16 15 14 39 39 H 1.07999 * 120.66594 * 179.97438 * 17 16 15 40 40 H 1.07998 * 120.43328 * 180.02562 * 18 17 16 41 41 H 0.96998 * 120.00013 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 16 2.1674 -0.9172 1.4546 5 6 3.5204 -1.7799 0.5543 6 6 2.8493 -2.0201 -0.8238 7 6 2.0642 -0.7686 -1.2192 8 1 1.2230 -1.0655 -1.8455 9 7 2.9400 0.1164 -1.9913 10 6 3.1278 -0.1024 -3.3078 11 8 2.5718 -1.0329 -3.8536 12 6 4.0211 0.7996 -4.0948 13 8 4.5775 1.7297 -3.5489 14 7 4.2093 0.5804 -5.4113 15 6 5.1227 1.3529 -6.1214 16 6 5.3936 1.0465 -7.4572 17 6 6.3046 1.8173 -8.1632 18 6 6.9219 2.8735 -7.5172 19 6 6.6077 3.1303 -6.1710 20 6 7.2297 4.2061 -5.4977 21 1 7.9442 4.8275 -6.0172 22 6 6.9197 4.4663 -4.1572 23 7 6.0552 3.7138 -3.5282 24 14 7.7414 5.8886 -3.2676 25 1 8.6730 6.5802 -4.1945 26 1 6.7058 6.8451 -2.8009 27 1 8.4991 5.3707 -2.1001 28 7 5.7225 2.3652 -5.5245 29 1 -0.3634 -1.0269 0.0399 30 1 -0.3633 0.5480 0.8694 31 1 -0.3634 0.4789 -0.9092 32 1 4.3980 -1.1408 0.4579 33 1 3.7751 -2.7230 1.0378 34 1 2.1715 -2.8712 -0.7572 35 1 3.6147 -2.2236 -1.5728 36 1 3.3845 0.8599 -1.5549 37 1 3.7079 -0.1158 -5.8636 38 1 4.8968 0.2159 -7.9366 39 1 6.5285 1.5971 -9.1965 40 1 7.6358 3.4926 -8.0400 41 1 5.8407 3.8938 -2.5995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890354974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:20 Heat of formation + Delta-G solvation = -28.159641 kcal Electronic energy + Delta-G solvation = -26449.330504 eV Core-core repulsion = 22648.575453 eV Total energy + Delta-G solvation = -3800.755051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83738 -40.47953 -39.09859 -38.03648 -36.12080 -34.96745 -33.74859 -32.91931 -32.27101 -31.08282 -27.96873 -27.41247 -25.60175 -24.81034 -23.52636 -22.87684 -21.41808 -21.09096 -19.97563 -18.88513 -18.30324 -17.79618 -17.51971 -16.92769 -16.60986 -16.44563 -16.29094 -15.78551 -15.54582 -15.19808 -15.01264 -14.93198 -14.72373 -14.57902 -14.04144 -13.89507 -13.77249 -13.27761 -12.94089 -12.88945 -12.74902 -12.74278 -12.56125 -12.50151 -12.31951 -12.19574 -12.08237 -11.74419 -11.61572 -10.98723 -10.92774 -10.61893 -10.41579 -9.93854 -9.20729 -8.92475 -8.79510 -8.09684 -6.42981 0.34868 0.72010 1.01016 1.17542 1.27460 1.41185 1.42765 1.53365 1.55992 2.27034 2.36239 2.62282 2.97546 3.17410 3.47506 3.67848 3.76197 3.85176 4.01196 4.09631 4.23280 4.32629 4.48856 4.63387 4.66983 4.69505 4.77819 4.81580 4.86591 4.92020 4.94164 4.98689 5.12861 5.22490 5.26181 5.62759 5.70528 5.88979 5.94495 6.13196 6.28133 6.52505 6.68818 6.81369 7.03748 7.28566 8.24538 8.54563 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.003475 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.411812 B = 8055.645830 C = 9694.412200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.041 4.041 3 H 0.105 0.895 4 S -0.309 6.309 5 C -0.062 4.062 6 C -0.131 4.131 7 C 0.141 3.859 8 H 0.108 0.892 9 N -0.688 5.688 10 C 0.525 3.475 11 O -0.538 6.538 12 C 0.459 3.541 13 O -0.420 6.420 14 N -0.632 5.632 15 C 0.347 3.653 16 C -0.342 4.342 17 C -0.033 4.033 18 C -0.322 4.322 19 C 0.237 3.763 20 C -0.461 4.461 21 H 0.086 0.914 22 C 0.016 3.984 23 N -0.693 5.693 24 Si 0.974 3.026 25 H -0.257 1.257 26 H -0.270 1.270 27 H -0.270 1.270 28 N -0.505 5.505 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.425 0.575 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 -9.391 8.348 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.170 4.170 3 H 0.123 0.877 4 S -0.082 6.082 5 C -0.209 4.209 6 C -0.171 4.171 7 C 0.036 3.964 8 H 0.125 0.875 9 N -0.342 5.342 10 C 0.305 3.695 11 O -0.415 6.415 12 C 0.237 3.763 13 O -0.284 6.284 14 N -0.282 5.282 15 C 0.109 3.891 16 C -0.367 4.367 17 C -0.057 4.057 18 C -0.345 4.345 19 C 0.112 3.888 20 C -0.492 4.492 21 H 0.104 0.896 22 C -0.210 4.210 23 N -0.313 5.313 24 Si 0.795 3.205 25 H -0.181 1.181 26 H -0.195 1.195 27 H -0.195 1.195 28 N -0.225 5.225 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.253 0.747 37 H 0.263 0.737 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.823 -9.254 10.711 17.229 hybrid contribution 1.022 0.514 -1.812 2.143 sum -8.800 -8.740 8.900 15.265 Atomic orbital electron populations 1.21812 0.89749 1.04041 1.03402 1.23979 1.01038 1.01034 0.90912 0.87703 1.87994 1.41018 1.59042 1.20192 1.24424 0.97249 1.03513 0.95757 1.22752 1.00237 0.98018 0.96050 1.21931 0.93211 0.88980 0.92269 0.87451 1.46041 1.47819 1.32771 1.07591 1.20060 0.81519 0.84444 0.83479 1.90705 1.48938 1.31230 1.70652 1.20758 0.84733 0.86889 0.83929 1.91219 1.42441 1.26205 1.68573 1.42973 1.40350 1.36298 1.08597 1.18995 0.90259 0.90981 0.88855 1.20964 1.12196 1.09127 0.94455 1.21046 0.93108 0.92673 0.98923 1.21850 1.10328 1.05205 0.97141 1.18850 0.88850 0.91587 0.89528 1.19940 1.21496 1.11028 0.96715 0.89551 1.26952 0.95737 0.99784 0.98486 1.70450 1.20362 1.30694 1.09757 0.85278 0.78797 0.78000 0.78376 1.18050 1.19504 1.19524 1.68602 1.12373 1.05905 1.35644 0.90464 0.90948 0.90490 0.89350 0.85637 0.87748 0.90453 0.74714 0.73722 0.85228 0.84340 0.87438 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.04 71.98 0.65 -1.18 16 2 C -0.04 -0.70 3.65 30.83 0.11 -0.59 16 3 H 0.10 1.88 7.56 -2.39 -0.02 1.86 16 4 S -0.31 -5.83 22.66 -56.49 -1.28 -7.11 16 5 C -0.06 -1.01 7.52 72.72 0.55 -0.46 16 6 C -0.13 -2.29 5.97 31.31 0.19 -2.10 16 7 C 0.14 2.71 2.63 45.21 0.12 2.83 16 8 H 0.11 2.12 7.07 -2.39 -0.02 2.11 16 9 N -0.69 -16.97 4.97 -442.93 -2.20 -19.18 16 10 C 0.52 16.33 7.58 87.24 0.66 16.99 16 11 O -0.54 -17.28 16.15 -3.28 -0.05 -17.34 16 12 C 0.46 18.26 7.84 87.24 0.68 18.94 16 13 O -0.42 -19.79 12.24 -3.28 -0.04 -19.83 16 14 N -0.63 -25.26 5.37 -309.70 -1.66 -26.93 16 15 C 0.35 16.62 7.42 133.30 0.99 17.60 16 16 C -0.34 -14.54 9.95 22.72 0.23 -14.31 16 17 C -0.03 -1.42 10.15 22.39 0.23 -1.20 16 18 C -0.32 -15.82 9.83 22.87 0.22 -15.59 16 19 C 0.24 13.26 6.55 40.20 0.26 13.52 16 20 C -0.46 -25.26 9.14 23.47 0.21 -25.05 16 21 H 0.09 4.46 7.85 -2.91 -0.02 4.43 16 22 C 0.02 0.82 5.50 85.29 0.47 1.29 16 23 N -0.69 -37.31 8.99 21.84 0.20 -37.12 16 24 Si 0.97 38.75 29.56 68.60 2.03 40.78 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 27 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 28 N -0.51 -28.05 5.73 -186.42 -1.07 -29.12 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.60 7.77 -2.39 -0.02 1.58 16 36 H 0.42 10.42 7.72 -92.71 -0.72 9.70 16 37 H 0.42 14.08 8.18 -92.72 -0.76 13.32 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.14 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 41 H 0.27 13.57 8.29 -92.71 -0.77 12.80 16 Total: -1.00 -67.41 357.23 1.11 -66.31 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: -0.38 Total: 38.83 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.58 Total: 10.70 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.74 Total: -112.34 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.09 Total: -37.16 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.28 Total: -7.11 kcal Total: -67.41 1.11 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890354974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.147 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds