Wall clock time and date at job start Tue Mar 31 2020 19:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47341 * 2 1 4 4 O 1.21287 * 119.99728 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00227 * 180.02562 * 3 2 1 6 6 C 1.47602 * 122.42876 * 0.02562 * 5 3 2 7 7 S 1.84076 * 102.63908 * 155.16954 * 6 5 3 8 8 C 1.84206 * 93.91005 * 33.43298 * 7 6 5 9 9 C 1.45501 * 122.43142 * 180.02562 * 5 3 2 10 10 H 1.09003 * 108.62219 * 301.97659 * 9 5 3 11 11 C 1.50696 * 108.75589 * 60.12713 * 9 5 3 12 12 O 1.21275 * 119.99692 * 5.09957 * 11 9 5 13 13 N 1.34775 * 120.00038 * 185.09456 * 11 9 5 14 14 C 1.37211 * 120.00044 * 0.02562 * 13 11 9 15 15 H 1.07996 * 119.99714 * 49.72206 * 14 13 11 16 16 C 1.38890 * 119.99996 * 229.71581 * 14 13 11 17 17 N 1.31408 * 120.00006 * 197.57624 * 16 14 13 18 18 Si 1.86800 * 120.00171 * 17.57699 * 16 14 13 19 19 H 1.48495 * 109.47500 * 174.85071 * 18 16 14 20 20 H 1.48504 * 109.47018 * 54.85046 * 18 16 14 21 21 H 1.48498 * 109.47000 * 294.85369 * 18 16 14 22 22 C 1.39424 * 119.99759 * 179.97438 * 13 11 9 23 23 C 1.39068 * 119.69892 * 193.74247 * 22 13 11 24 24 C 1.38375 * 119.10551 * 180.02562 * 23 22 13 25 25 C 1.38833 * 118.48975 * 0.02562 * 24 23 22 26 26 C 1.38146 * 119.31128 * 359.97438 * 25 24 23 27 27 N 1.31882 * 120.84863 * 359.72433 * 26 25 24 28 28 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46986 * 300.00152 * 1 2 3 30 30 H 1.09000 * 109.47265 * 59.99939 * 1 2 3 31 31 H 1.08997 * 109.46986 * 239.99848 * 2 1 3 32 32 H 1.09000 * 109.47265 * 120.00061 * 2 1 3 33 33 H 1.08999 * 110.77957 * 36.87797 * 6 5 3 34 34 H 1.09002 * 110.77654 * 273.45270 * 6 5 3 35 35 H 1.09007 * 111.05191 * 209.73048 * 8 7 6 36 36 H 1.09000 * 111.08943 * 85.77153 * 8 7 6 37 37 H 0.97004 * 120.00372 * 359.97438 * 17 16 14 38 38 H 1.08007 * 120.44580 * 0.02562 * 23 22 13 39 39 H 1.08000 * 120.75840 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.34750 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.57897 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3633 0.5868 -0.0017 7 16 5.8304 1.4034 -0.7562 8 6 5.4452 3.0511 -0.0285 9 6 3.9002 3.0171 0.0000 10 1 3.5221 3.5446 -0.8757 11 6 3.4221 3.7310 1.2380 12 8 2.7801 3.1313 2.0740 13 7 3.7082 5.0359 1.4162 14 6 4.4342 5.7146 0.4701 15 1 4.1525 5.6564 -0.5709 16 6 5.5313 6.4763 0.8512 17 7 6.0145 7.3864 0.0357 18 14 6.3200 6.2070 2.5230 19 1 7.5378 7.0490 2.6373 20 1 6.6914 4.7768 2.6705 21 1 5.3576 6.5811 3.5903 22 6 3.2654 5.6966 2.5613 23 6 3.3065 7.0856 2.6148 24 6 2.8645 7.7286 3.7576 25 6 2.3952 6.9571 4.8120 26 6 2.3829 5.5811 4.6902 27 7 2.8051 4.9961 3.5861 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0299 -0.2513 -0.6136 34 1 4.5824 0.2614 1.0153 35 1 5.8076 3.8560 -0.6680 36 1 5.8531 3.1403 0.9784 37 1 5.6052 7.5260 -0.8326 38 1 3.6784 7.6548 1.7756 39 1 2.8849 8.8061 3.8280 40 1 2.0426 7.4277 5.7179 41 1 2.0183 4.9767 5.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:56 Heat of formation + Delta-G solvation = 5.804614 kcal Electronic energy + Delta-G solvation = -28049.819894 eV Core-core repulsion = 24250.537643 eV Total energy + Delta-G solvation = -3799.282251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53236 -39.60967 -38.02222 -35.82676 -35.21430 -32.87758 -32.44937 -31.53486 -31.06231 -29.16927 -27.21220 -25.20400 -24.83162 -23.70493 -22.51731 -21.75262 -19.93588 -19.13536 -18.33704 -17.11914 -17.09558 -16.54096 -16.26741 -15.57371 -15.29349 -15.21457 -14.79554 -14.50719 -14.04446 -13.92175 -13.77920 -13.52191 -13.29887 -12.99298 -12.82949 -12.78438 -12.42946 -12.34775 -12.25254 -11.95794 -11.64524 -11.50456 -11.38143 -11.11707 -10.84148 -10.63409 -10.37881 -9.94424 -9.76634 -9.61455 -9.30489 -9.15182 -8.74970 -8.64114 -8.16570 -7.79067 -7.53674 -6.98204 -4.62406 1.73174 1.82813 2.06927 2.16115 2.75696 2.99664 3.09885 3.21808 3.33369 3.53043 3.93885 4.01719 4.45489 4.53620 4.77500 4.88913 4.94570 5.07067 5.12646 5.15267 5.25356 5.36731 5.45304 5.50218 5.64094 5.76357 5.77473 5.91902 5.95562 5.97500 6.00344 6.10306 6.25787 6.42881 6.52154 6.71746 6.92346 7.20216 7.40254 7.53351 7.71842 8.00449 8.38376 8.54893 8.67992 8.98420 9.47599 10.23013 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005797 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.158893 B = 4828.892727 C = 6343.908036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.531 3.469 4 O -0.516 6.516 5 N -0.604 5.604 6 C 0.158 3.842 7 S -0.295 6.295 8 C -0.027 4.027 9 C 0.135 3.865 10 H 0.106 0.894 11 C 0.491 3.509 12 O -0.498 6.498 13 N -0.401 5.401 14 C -0.446 4.446 15 H 0.095 0.905 16 C 0.052 3.948 17 N -0.849 5.849 18 Si 1.017 2.983 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.260 1.260 22 C 0.361 3.639 23 C -0.184 4.184 24 C -0.066 4.066 25 C -0.231 4.231 26 C 0.116 3.884 27 N -0.491 5.491 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.282 0.718 38 H 0.146 0.854 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -9.223 1.053 9.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.319 3.681 4 O -0.390 6.390 5 N -0.341 5.341 6 C -0.076 4.076 7 S -0.068 6.068 8 C -0.175 4.175 9 C 0.027 3.973 10 H 0.124 0.876 11 C 0.277 3.723 12 O -0.370 6.370 13 N -0.116 5.116 14 C -0.573 4.573 15 H 0.113 0.887 16 C -0.162 4.162 17 N -0.478 5.478 18 Si 0.842 3.158 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.185 1.185 22 C 0.131 3.869 23 C -0.207 4.207 24 C -0.092 4.092 25 C -0.253 4.253 26 C -0.042 4.042 27 N -0.207 5.207 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.164 0.836 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.084 -9.919 1.508 10.091 hybrid contribution -1.823 1.020 -0.289 2.109 sum -2.907 -8.898 1.220 9.441 Atomic orbital electron populations 1.21518 0.92964 1.01270 1.03540 1.21612 0.98667 0.93535 1.03916 1.20458 0.80266 0.91999 0.75413 1.90731 1.54029 1.46550 1.47698 1.48272 1.05870 1.04681 1.75229 1.24142 0.87713 0.92489 1.03276 1.88180 1.36677 1.12943 1.69000 1.24466 0.93309 0.94211 1.05509 1.20878 0.93898 0.83170 0.99399 0.87625 1.20914 0.81515 0.82312 0.87608 1.90665 1.37488 1.65349 1.43546 1.41449 1.46308 1.07135 1.16689 1.20451 1.11422 1.35397 0.90002 0.88734 1.26359 0.93084 0.91648 1.05086 1.70856 1.42237 1.24777 1.09916 0.84404 0.78049 0.77530 0.75847 1.20001 1.20327 1.18505 1.19096 0.91234 0.88683 0.87918 1.21727 1.04656 0.94085 1.00223 1.21256 0.95612 0.99654 0.92667 1.21775 1.07620 0.95474 1.00405 1.22421 0.95333 0.92098 0.94393 1.67615 1.13514 1.39775 0.99817 0.92223 0.91775 0.92074 0.89194 0.88910 0.86895 0.88802 0.84228 0.88152 0.90711 0.83606 0.85694 0.86112 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.20 37.16 0.34 -1.27 16 2 C -0.14 -1.65 5.21 -27.88 -0.15 -1.79 16 3 C 0.53 9.37 6.77 -10.99 -0.07 9.29 16 4 O -0.52 -11.49 14.82 -11.53 -0.17 -11.66 16 5 N -0.60 -10.31 2.73 -169.16 -0.46 -10.78 16 6 C 0.16 2.06 7.21 60.45 0.44 2.50 16 7 S -0.29 -4.40 23.43 -107.50 -2.52 -6.92 16 8 C -0.03 -0.48 5.77 37.98 0.22 -0.26 16 9 C 0.14 2.66 2.21 -68.80 -0.15 2.50 16 10 H 0.11 2.17 7.64 -51.93 -0.40 1.77 16 11 C 0.49 11.58 6.14 -10.99 -0.07 11.52 16 12 O -0.50 -12.80 13.24 -11.52 -0.15 -12.95 16 13 N -0.40 -9.70 2.21 -60.71 -0.13 -9.83 16 14 C -0.45 -10.55 6.06 -14.90 -0.09 -10.64 16 15 H 0.10 2.30 7.56 -52.49 -0.40 1.90 16 16 C 0.05 1.25 4.01 -17.49 -0.07 1.18 16 17 N -0.85 -21.12 13.69 55.49 0.76 -20.36 16 18 Si 1.02 23.00 26.27 -169.99 -4.47 18.53 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.26 -5.91 5.30 56.52 0.30 -5.61 16 22 C 0.36 8.69 5.04 -154.64 -0.78 7.91 16 23 C -0.18 -4.05 6.35 -39.22 -0.25 -4.30 16 24 C -0.07 -1.23 10.04 -39.31 -0.39 -1.62 16 25 C -0.23 -4.01 10.11 -39.40 -0.40 -4.41 16 26 C 0.12 2.27 11.18 -17.56 -0.20 2.07 16 27 N -0.49 -11.70 8.01 -12.34 -0.10 -11.79 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.09 0.82 7.63 -51.93 -0.40 0.42 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.11 1.09 7.13 -51.93 -0.37 0.71 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.14 2.53 7.43 -51.93 -0.39 2.14 16 36 H 0.10 1.93 7.85 -51.93 -0.41 1.52 16 37 H 0.28 6.86 8.73 -40.82 -0.36 6.50 16 38 H 0.15 3.34 6.18 -52.48 -0.32 3.01 16 39 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -31.31 344.18 -8.99 -40.30 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.31 Total: 7.59 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -1.62 Total: 12.69 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.07 Total: -52.77 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.32 Total: -24.61 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.47 Total: 18.53 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.52 Total: -6.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.31 -8.99 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.103 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds