Wall clock time and date at job start Tue Mar 31 2020 19:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47341 * 2 1 4 4 O 1.21287 * 119.99728 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00227 * 180.02562 * 3 2 1 6 6 C 1.47602 * 122.42876 * 0.02562 * 5 3 2 7 7 S 1.84076 * 102.63908 * 155.16954 * 6 5 3 8 8 C 1.84206 * 93.91005 * 33.43298 * 7 6 5 9 9 C 1.45501 * 122.43142 * 180.02562 * 5 3 2 10 10 H 1.09003 * 108.62219 * 301.97659 * 9 5 3 11 11 C 1.50696 * 108.75589 * 60.12713 * 9 5 3 12 12 O 1.21275 * 119.99692 * 5.09957 * 11 9 5 13 13 N 1.34775 * 120.00038 * 185.09456 * 11 9 5 14 14 C 1.37211 * 120.00044 * 0.02562 * 13 11 9 15 15 H 1.07996 * 119.99714 * 49.72206 * 14 13 11 16 16 C 1.38890 * 119.99996 * 229.71581 * 14 13 11 17 17 N 1.31408 * 120.00006 * 197.57624 * 16 14 13 18 18 Si 1.86800 * 120.00171 * 17.57699 * 16 14 13 19 19 H 1.48495 * 109.47500 * 174.85071 * 18 16 14 20 20 H 1.48504 * 109.47018 * 54.85046 * 18 16 14 21 21 H 1.48498 * 109.47000 * 294.85369 * 18 16 14 22 22 C 1.39424 * 119.99759 * 179.97438 * 13 11 9 23 23 C 1.39068 * 119.69892 * 193.74247 * 22 13 11 24 24 C 1.38375 * 119.10551 * 180.02562 * 23 22 13 25 25 C 1.38833 * 118.48975 * 0.02562 * 24 23 22 26 26 C 1.38146 * 119.31128 * 359.97438 * 25 24 23 27 27 N 1.31882 * 120.84863 * 359.72433 * 26 25 24 28 28 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46986 * 300.00152 * 1 2 3 30 30 H 1.09000 * 109.47265 * 59.99939 * 1 2 3 31 31 H 1.08997 * 109.46986 * 239.99848 * 2 1 3 32 32 H 1.09000 * 109.47265 * 120.00061 * 2 1 3 33 33 H 1.08999 * 110.77957 * 36.87797 * 6 5 3 34 34 H 1.09002 * 110.77654 * 273.45270 * 6 5 3 35 35 H 1.09007 * 111.05191 * 209.73048 * 8 7 6 36 36 H 1.09000 * 111.08943 * 85.77153 * 8 7 6 37 37 H 0.97004 * 120.00372 * 359.97438 * 17 16 14 38 38 H 1.08007 * 120.44580 * 0.02562 * 23 22 13 39 39 H 1.08000 * 120.75840 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.34750 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.57897 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3633 0.5868 -0.0017 7 16 5.8304 1.4034 -0.7562 8 6 5.4452 3.0511 -0.0285 9 6 3.9002 3.0171 0.0000 10 1 3.5221 3.5446 -0.8757 11 6 3.4221 3.7310 1.2380 12 8 2.7801 3.1313 2.0740 13 7 3.7082 5.0359 1.4162 14 6 4.4342 5.7146 0.4701 15 1 4.1525 5.6564 -0.5709 16 6 5.5313 6.4763 0.8512 17 7 6.0145 7.3864 0.0357 18 14 6.3200 6.2070 2.5230 19 1 7.5378 7.0490 2.6373 20 1 6.6914 4.7768 2.6705 21 1 5.3576 6.5811 3.5903 22 6 3.2654 5.6966 2.5613 23 6 3.3065 7.0856 2.6148 24 6 2.8645 7.7286 3.7576 25 6 2.3952 6.9571 4.8120 26 6 2.3829 5.5811 4.6902 27 7 2.8051 4.9961 3.5861 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0299 -0.2513 -0.6136 34 1 4.5824 0.2614 1.0153 35 1 5.8076 3.8560 -0.6680 36 1 5.8531 3.1403 0.9784 37 1 5.6052 7.5260 -0.8326 38 1 3.6784 7.6548 1.7756 39 1 2.8849 8.8061 3.8280 40 1 2.0426 7.4277 5.7179 41 1 2.0183 4.9767 5.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:56 Heat of formation + Delta-G solvation = -13.243060 kcal Electronic energy + Delta-G solvation = -28050.645863 eV Core-core repulsion = 24250.537643 eV Total energy + Delta-G solvation = -3800.108220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.15253 -41.09351 -39.63022 -37.30251 -37.00567 -34.28862 -34.02348 -33.15732 -32.43692 -30.73865 -28.43409 -26.94594 -26.15556 -25.19346 -24.06437 -23.23477 -21.46049 -20.84349 -19.83516 -18.69237 -18.44004 -18.07707 -17.76063 -17.04826 -16.87355 -16.71334 -16.15072 -16.03294 -15.78459 -15.39774 -15.22762 -14.92291 -14.72228 -14.63948 -14.51645 -14.15950 -13.99059 -13.82380 -13.44027 -13.16724 -12.99605 -12.92308 -12.64992 -12.54311 -12.17552 -12.06926 -12.04231 -11.78649 -11.53177 -11.09881 -10.87523 -10.84269 -10.47621 -10.13494 -9.79704 -9.33785 -8.99978 -8.81465 -6.52480 0.22409 0.50253 0.53025 0.84074 1.26019 1.35510 1.42007 1.53454 1.69907 1.80640 2.16279 2.31217 2.73773 3.10245 3.23852 3.52786 3.57864 3.80674 3.97134 4.03452 4.07125 4.14108 4.21085 4.26159 4.32189 4.39525 4.43612 4.47034 4.56414 4.65515 4.91646 4.95691 5.01225 5.01966 5.17628 5.32454 5.38250 5.58152 5.63301 5.99338 6.11305 6.14814 6.75911 6.88498 7.06101 7.25125 7.70148 8.31457 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005797 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.158893 B = 4828.892727 C = 6343.908036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.519 3.481 4 O -0.576 6.576 5 N -0.607 5.607 6 C 0.157 3.843 7 S -0.270 6.270 8 C -0.027 4.027 9 C 0.143 3.857 10 H 0.086 0.914 11 C 0.480 3.520 12 O -0.527 6.527 13 N -0.415 5.415 14 C -0.433 4.433 15 H 0.077 0.923 16 C 0.041 3.959 17 N -0.870 5.870 18 Si 1.042 2.958 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.259 1.259 22 C 0.327 3.673 23 C -0.204 4.204 24 C -0.063 4.063 25 C -0.206 4.206 26 C 0.101 3.899 27 N -0.527 5.527 28 H 0.098 0.902 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.277 0.723 38 H 0.128 0.872 39 H 0.164 0.836 40 H 0.172 0.828 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.599 -10.938 2.510 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.309 3.691 4 O -0.454 6.454 5 N -0.342 5.342 6 C -0.075 4.075 7 S -0.043 6.043 8 C -0.176 4.176 9 C 0.033 3.967 10 H 0.103 0.897 11 C 0.267 3.733 12 O -0.403 6.403 13 N -0.130 5.130 14 C -0.559 4.559 15 H 0.094 0.906 16 C -0.170 4.170 17 N -0.500 5.500 18 Si 0.866 3.134 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.184 1.184 22 C 0.099 3.901 23 C -0.227 4.227 24 C -0.088 4.088 25 C -0.228 4.228 26 C -0.057 4.057 27 N -0.243 5.243 28 H 0.116 0.884 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.179 0.821 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.181 0.819 40 H 0.190 0.810 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.222 -11.646 2.967 12.080 hybrid contribution -1.902 1.552 -0.645 2.538 sum -3.124 -10.094 2.322 10.818 Atomic orbital electron populations 1.21525 0.93206 1.02986 1.01410 1.21747 0.98351 0.89663 1.06904 1.21685 0.79771 0.93902 0.73736 1.90700 1.55488 1.48848 1.50357 1.48436 1.06740 1.04417 1.74633 1.24575 0.85718 0.92138 1.05082 1.88048 1.37635 1.10004 1.68638 1.24139 0.92085 0.96745 1.04626 1.20689 0.94767 0.84627 0.96592 0.89669 1.21533 0.80977 0.82277 0.88491 1.90608 1.38830 1.65857 1.44961 1.41588 1.46774 1.07567 1.17073 1.20182 1.11427 1.34974 0.89344 0.90571 1.26753 0.93052 0.91218 1.05966 1.70891 1.42957 1.26002 1.10163 0.84052 0.77585 0.77213 0.74551 1.19639 1.20660 1.18379 1.19329 0.93065 0.89547 0.88185 1.21737 1.06226 0.93393 1.01377 1.21775 0.93828 1.01751 0.91469 1.22292 1.04600 0.94475 1.01393 1.23122 0.94709 0.93916 0.93968 1.67567 1.14492 1.41279 1.00977 0.88379 0.94775 0.93473 0.85021 0.86524 0.82130 0.87381 0.85312 0.89873 0.91202 0.85396 0.81885 0.81040 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.20 71.98 0.66 -2.32 16 2 C -0.13 -2.69 5.21 29.85 0.16 -2.53 16 3 C 0.52 18.16 6.77 87.66 0.59 18.76 16 4 O -0.58 -26.77 14.82 13.28 0.20 -26.58 16 5 N -0.61 -20.47 2.73 -807.48 -2.20 -22.67 16 6 C 0.16 3.67 7.21 127.56 0.92 4.59 16 7 S -0.27 -7.69 23.43 -56.49 -1.32 -9.01 16 8 C -0.03 -1.00 5.77 72.51 0.42 -0.59 16 9 C 0.14 5.86 2.21 44.96 0.10 5.96 16 10 H 0.09 3.78 7.64 -2.39 -0.02 3.76 16 11 C 0.48 23.76 6.14 87.66 0.54 24.30 16 12 O -0.53 -28.15 13.24 13.32 0.18 -27.98 16 13 N -0.41 -21.02 2.21 -464.39 -1.02 -22.05 16 14 C -0.43 -21.65 6.06 84.01 0.51 -21.14 16 15 H 0.08 4.01 7.56 -2.91 -0.02 3.99 16 16 C 0.04 2.03 4.01 84.91 0.34 2.37 16 17 N -0.87 -44.75 13.69 21.65 0.30 -44.45 16 18 Si 1.04 47.56 26.27 68.60 1.80 49.37 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.26 -11.70 5.30 99.48 0.53 -11.18 16 22 C 0.33 16.16 5.04 132.91 0.67 16.83 16 23 C -0.20 -9.06 6.35 22.50 0.14 -8.91 16 24 C -0.06 -2.18 10.04 22.44 0.23 -1.95 16 25 C -0.21 -6.43 10.11 22.39 0.23 -6.21 16 26 C 0.10 3.74 11.18 84.66 0.95 4.69 16 27 N -0.53 -25.25 8.01 -192.96 -1.55 -26.80 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.03 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.13 1.73 7.63 -2.39 -0.02 1.71 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.16 2.25 7.13 -2.39 -0.02 2.23 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.13 4.96 7.43 -2.38 -0.02 4.95 16 36 H 0.08 3.34 7.85 -2.39 -0.02 3.32 16 37 H 0.28 14.13 8.73 -92.71 -0.81 13.32 16 38 H 0.13 6.06 6.18 -2.91 -0.02 6.04 16 39 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 41 H 0.18 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -74.48 344.18 3.66 -70.83 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.83 Total: 25.50 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 6.45 Total: 33.84 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.48 Total: -115.97 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: 0.37 Total: -54.55 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.80 Total: 49.37 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.32 Total: -9.01 kcal Total: -74.48 3.66 -70.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.584 kcal (2) G-P(sol) polarization free energy of solvation -74.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds