Wall clock time and date at job start Tue Mar 31 2020 19:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47142 * 2 1 4 4 O 1.21273 * 119.99971 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99913 * 179.97438 * 3 2 1 6 6 C 1.47059 * 122.49818 * 354.38709 * 5 3 2 7 7 S 1.83556 * 104.97784 * 175.95900 * 6 5 3 8 8 C 1.84248 * 94.86431 * 341.48699 * 7 6 5 9 9 C 1.46174 * 122.46421 * 174.33836 * 5 3 2 10 10 H 1.09000 * 109.44556 * 90.70384 * 9 5 3 11 11 C 1.50699 * 109.52854 * 330.74561 * 9 5 3 12 12 O 1.21279 * 119.99823 * 327.24881 * 11 9 5 13 13 N 1.34777 * 120.00348 * 147.24587 * 11 9 5 14 14 C 1.37210 * 120.00075 * 6.24726 * 13 11 9 15 15 H 1.08001 * 120.00054 * 305.74478 * 14 13 11 16 16 C 1.38891 * 120.00251 * 125.74020 * 14 13 11 17 17 N 1.31407 * 120.00186 * 171.72201 * 16 14 13 18 18 Si 1.86796 * 119.99872 * 351.72540 * 16 14 13 19 19 H 1.48494 * 109.47496 * 95.27698 * 18 16 14 20 20 H 1.48504 * 109.47120 * 215.27782 * 18 16 14 21 21 H 1.48506 * 109.47269 * 335.27398 * 18 16 14 22 22 C 1.39423 * 120.00164 * 186.24811 * 13 11 9 23 23 C 1.39069 * 119.70036 * 15.35751 * 22 13 11 24 24 C 1.38377 * 119.10518 * 179.97438 * 23 22 13 25 25 C 1.38834 * 118.48729 * 0.02562 * 24 23 22 26 26 C 1.38146 * 119.31189 * 359.97438 * 25 24 23 27 27 N 1.31883 * 120.85230 * 359.74447 * 26 25 24 28 28 H 1.09001 * 109.47459 * 60.00090 * 1 2 3 29 29 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47493 * 299.99988 * 1 2 3 31 31 H 1.09007 * 109.47240 * 239.99861 * 2 1 3 32 32 H 1.08998 * 109.47413 * 120.00443 * 2 1 3 33 33 H 1.09000 * 110.33769 * 57.08377 * 6 5 3 34 34 H 1.08998 * 110.34114 * 294.83282 * 6 5 3 35 35 H 1.09005 * 111.34540 * 150.77785 * 8 7 6 36 36 H 1.08998 * 111.34947 * 275.46611 * 8 7 6 37 37 H 0.97005 * 120.00322 * 180.02562 * 17 16 14 38 38 H 1.08008 * 120.44523 * 0.02562 * 23 22 13 39 39 H 1.07993 * 120.75647 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.34105 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.56845 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3597 0.5979 0.1224 7 16 5.9793 1.4433 -0.0552 8 6 5.2804 2.9561 -0.8413 9 6 3.9047 3.0171 -0.1211 10 1 4.0333 3.4473 0.8721 11 6 2.9572 3.8746 -0.9199 12 8 2.2947 3.3811 -1.8079 13 7 2.8460 5.1899 -0.6475 14 6 3.6851 5.7743 0.2674 15 1 3.7654 5.3665 1.2642 16 6 4.4313 6.8904 -0.0884 17 7 5.1082 7.5473 0.8266 18 14 4.4727 7.4578 -1.8676 19 1 3.4551 8.5197 -2.0724 20 1 5.8201 7.9958 -2.1845 21 1 4.1759 6.3090 -2.7606 22 6 1.8784 5.9566 -1.2953 23 6 0.8358 5.3268 -1.9664 24 6 -0.1181 6.0998 -2.6047 25 6 0.0045 7.4816 -2.5501 26 6 1.0664 8.0398 -1.8650 27 7 1.9575 7.2777 -1.2614 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.2273 -0.1377 -0.6710 34 1 4.2870 0.1200 1.0993 35 1 5.8849 3.8351 -0.6172 36 1 5.1599 2.8250 -1.9166 37 1 5.6291 8.3270 0.5782 38 1 0.7711 4.2489 -1.9884 39 1 -0.9387 5.6386 -3.1340 40 1 -0.7233 8.1135 -3.0373 41 1 1.1659 9.1143 -1.8202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:58 Heat of formation + Delta-G solvation = -0.410204 kcal Electronic energy + Delta-G solvation = -28222.631554 eV Core-core repulsion = 24423.079809 eV Total energy + Delta-G solvation = -3799.551745 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36517 -41.13033 -39.64291 -37.34061 -36.96918 -34.13021 -33.95038 -33.34112 -32.36475 -30.93690 -28.37895 -27.20501 -26.26772 -25.19239 -24.24706 -23.29880 -21.64649 -20.62704 -19.74971 -18.93973 -18.27026 -18.02863 -17.54761 -17.22363 -17.08116 -16.50375 -16.26513 -16.12486 -15.90088 -15.51297 -15.15438 -14.99616 -14.80286 -14.61270 -14.32571 -14.13526 -14.11004 -13.94018 -13.37326 -13.25680 -13.10627 -13.04295 -12.98129 -12.60360 -12.45683 -12.14707 -12.02273 -11.78971 -11.41837 -10.93623 -10.82807 -10.60383 -10.55268 -10.01921 -9.94119 -9.08661 -8.90368 -8.46347 -6.48659 0.16657 0.34335 0.48922 0.85204 1.30331 1.38784 1.39118 1.44477 1.64942 1.80585 2.21791 2.31141 2.90469 3.01901 3.22596 3.55675 3.67800 3.77336 3.87838 4.03154 4.11321 4.17596 4.19634 4.24590 4.30131 4.36846 4.38106 4.50152 4.51281 4.68042 4.92078 4.96231 5.00392 5.05799 5.11801 5.35775 5.37486 5.42090 5.81077 5.90729 6.12826 6.16568 6.65138 6.98088 7.10951 7.35660 7.47795 8.58568 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.006109 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.909430 B = 4582.007247 C = 6354.033029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.511 3.489 4 O -0.559 6.559 5 N -0.616 5.616 6 C 0.156 3.844 7 S -0.251 6.251 8 C -0.055 4.055 9 C 0.137 3.863 10 H 0.096 0.904 11 C 0.520 3.480 12 O -0.550 6.550 13 N -0.412 5.412 14 C -0.369 4.369 15 H 0.077 0.923 16 C 0.079 3.921 17 N -0.894 5.894 18 Si 0.974 3.026 19 H -0.244 1.244 20 H -0.312 1.312 21 H -0.308 1.308 22 C 0.321 3.679 23 C -0.220 4.220 24 C -0.058 4.058 25 C -0.198 4.198 26 C 0.100 3.900 27 N -0.531 5.531 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.280 0.720 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.177 0.823 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -13.782 -4.418 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.301 3.699 4 O -0.435 6.435 5 N -0.353 5.353 6 C -0.076 4.076 7 S -0.024 6.024 8 C -0.204 4.204 9 C 0.028 3.972 10 H 0.114 0.886 11 C 0.309 3.691 12 O -0.430 6.430 13 N -0.125 5.125 14 C -0.495 4.495 15 H 0.095 0.905 16 C -0.128 4.128 17 N -0.528 5.528 18 Si 0.807 3.193 19 H -0.170 1.170 20 H -0.242 1.242 21 H -0.236 1.236 22 C 0.094 3.906 23 C -0.242 4.242 24 C -0.084 4.084 25 C -0.219 4.219 26 C -0.057 4.057 27 N -0.249 5.249 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.194 0.806 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.704 -13.451 -3.965 14.504 hybrid contribution -1.302 1.023 -0.988 1.928 sum -5.006 -12.428 -4.953 14.284 Atomic orbital electron populations 1.21519 0.93350 1.02818 1.01460 1.21717 0.98177 0.89655 1.06882 1.21724 0.79957 0.93991 0.74187 1.90739 1.55257 1.48234 1.49314 1.48438 1.06742 1.05084 1.75076 1.24300 0.84008 0.90822 1.08503 1.87990 1.13937 1.19883 1.80585 1.24424 0.94589 0.99408 1.02014 1.21363 0.91900 0.83821 1.00130 0.88590 1.20625 0.82851 0.82178 0.83405 1.90378 1.46003 1.73489 1.33110 1.41270 1.28081 1.07021 1.36172 1.18631 1.21876 1.15541 0.93465 0.90507 1.25753 0.91822 0.94312 1.00935 1.69734 1.29529 1.18341 1.35230 0.85306 0.74696 0.79428 0.79919 1.16976 1.24229 1.23589 1.19272 0.88967 0.88865 0.93470 1.22803 0.95065 1.04025 1.02349 1.21883 0.97157 0.94031 0.95365 1.22301 1.00787 0.95693 1.03122 1.22969 0.90034 1.00428 0.92224 1.66852 1.29841 1.05063 1.23113 0.94365 0.88669 0.93825 0.86274 0.85441 0.85150 0.84531 0.85865 0.88299 0.91033 0.82793 0.81662 0.80592 0.80835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.20 71.98 0.66 -2.10 16 2 C -0.12 -2.37 5.36 29.85 0.16 -2.21 16 3 C 0.51 16.59 6.87 87.66 0.60 17.19 16 4 O -0.56 -24.41 13.03 19.75 0.26 -24.16 16 5 N -0.62 -19.10 3.13 -806.57 -2.52 -21.63 16 6 C 0.16 3.14 6.86 127.66 0.88 4.02 16 7 S -0.25 -6.62 23.33 -56.49 -1.32 -7.94 16 8 C -0.05 -1.90 7.04 72.81 0.51 -1.39 16 9 C 0.14 5.41 2.65 45.13 0.12 5.53 16 10 H 0.10 4.22 6.50 -2.39 -0.02 4.20 16 11 C 0.52 25.03 4.94 87.66 0.43 25.47 16 12 O -0.55 -27.06 11.10 19.73 0.22 -26.84 16 13 N -0.41 -21.85 2.18 -464.37 -1.01 -22.87 16 14 C -0.37 -20.80 8.48 84.01 0.71 -20.09 16 15 H 0.08 4.62 7.13 -2.91 -0.02 4.60 16 16 C 0.08 4.48 5.12 84.91 0.43 4.91 16 17 N -0.89 -51.84 13.96 21.65 0.30 -51.53 16 18 Si 0.97 49.71 24.31 68.60 1.67 51.38 16 19 H -0.24 -11.83 5.42 99.48 0.54 -11.29 16 20 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 21 H -0.31 -16.70 7.04 99.48 0.70 -15.99 16 22 C 0.32 16.51 5.91 132.91 0.79 17.29 16 23 C -0.22 -10.04 8.87 22.50 0.20 -9.84 16 24 C -0.06 -2.03 10.17 22.45 0.23 -1.81 16 25 C -0.20 -6.22 10.11 22.39 0.23 -5.99 16 26 C 0.10 3.87 10.18 84.66 0.86 4.73 16 27 N -0.53 -26.22 4.87 -192.95 -0.94 -27.15 16 28 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.12 1.67 8.06 -2.38 -0.02 1.65 16 32 H 0.13 1.50 8.11 -2.39 -0.02 1.48 16 33 H 0.13 1.81 7.98 -2.39 -0.02 1.80 16 34 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.12 4.59 8.14 -2.38 -0.02 4.57 16 36 H 0.10 3.38 8.10 -2.39 -0.02 3.36 16 37 H 0.28 15.22 8.31 -92.70 -0.77 14.45 16 38 H 0.16 7.57 5.14 -10.75 -0.06 7.52 16 39 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.17 5.53 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -79.18 341.36 4.31 -74.88 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.84 Total: 20.14 kcal Atomic # 6 Polarization: 28.90 SS G_CDS: 6.81 Total: 35.72 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -4.17 Total: -123.18 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: 0.48 Total: -50.99 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 1.67 Total: 51.38 kcal Atomic # 16 Polarization: -6.62 SS G_CDS: -1.32 Total: -7.94 kcal Total: -79.18 4.31 -74.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.468 kcal (2) G-P(sol) polarization free energy of solvation -79.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds