Wall clock time and date at job start Tue Mar 31 2020 18:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31374 * 122.07900 * 2 1 4 4 C 1.30223 * 117.02691 * 180.28396 * 3 2 1 5 5 C 1.47888 * 125.47414 * 179.75321 * 4 3 2 6 6 C 1.41020 * 126.06317 * 0.02562 * 5 4 3 7 7 C 1.35027 * 107.84454 * 180.02562 * 6 5 4 8 8 N 1.35077 * 108.02578 * 359.97438 * 7 6 5 9 9 C 1.46491 * 125.91182 * 180.02562 * 8 7 6 10 10 N 1.31787 * 126.06552 * 179.69060 * 5 4 3 11 11 S 1.76179 * 109.04991 * 359.76034 * 4 3 2 12 12 C 1.33661 * 122.07340 * 179.82040 * 2 1 3 13 13 C 1.50699 * 125.88363 * 0.02562 * 12 2 1 14 14 C 1.50696 * 109.47593 * 89.71428 * 13 12 2 15 15 O 1.20830 * 119.99784 * 359.97438 * 14 13 12 16 16 O 1.34231 * 120.00448 * 179.97438 * 14 13 12 17 17 C 1.45198 * 117.00230 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.46912 * 330.00625 * 17 16 14 19 19 C 1.53000 * 109.46967 * 90.00189 * 17 16 14 20 20 C 1.50694 * 109.47115 * 210.00154 * 17 16 14 21 21 H 1.08000 * 120.00563 * 0.02562 * 20 17 16 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 16 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.08999 * 109.47351 * 270.18285 * 1 2 3 29 29 H 1.09002 * 109.47020 * 30.18147 * 1 2 3 30 30 H 1.09001 * 109.47140 * 150.17654 * 1 2 3 31 31 H 1.08002 * 126.08197 * 359.95291 * 6 5 4 32 32 H 1.07998 * 125.98813 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.47012 * 90.00665 * 9 8 7 34 34 H 1.09007 * 109.46900 * 209.99922 * 9 8 7 35 35 H 1.08999 * 109.47351 * 330.00429 * 9 8 7 36 36 H 1.09000 * 109.47363 * 329.70945 * 13 12 2 37 37 H 1.09008 * 109.47069 * 209.71699 * 13 12 2 38 38 H 1.09000 * 109.47156 * 59.99715 * 19 17 16 39 39 H 1.08997 * 109.47359 * 180.02562 * 19 17 16 40 40 H 1.09007 * 109.47356 * 299.99990 * 19 17 16 41 41 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2047 1.1132 0.0000 4 6 3.5018 0.9985 -0.0057 5 6 4.4628 2.1226 -0.0120 6 6 4.1357 3.4943 -0.0123 7 6 5.2900 4.1949 -0.0195 8 7 6.3137 3.3138 -0.0231 9 6 7.7389 3.6525 -0.0305 10 7 5.7766 2.0201 -0.0121 11 16 3.9280 -0.7110 -0.0051 12 6 2.2167 -1.1326 0.0036 13 6 1.6511 -2.5294 0.0074 14 6 1.4565 -2.9966 -1.4121 15 8 1.7469 -2.2696 -2.3325 16 8 0.9607 -4.2203 -1.6540 17 6 0.7997 -4.6031 -3.0453 18 1 0.6018 -3.7152 -3.6459 19 6 2.0804 -5.2783 -3.5399 20 6 -0.3552 -5.5628 -3.1718 21 1 -0.9128 -5.8555 -2.2944 22 6 -0.7001 -6.0674 -4.4078 23 7 -0.0215 -5.7106 -5.4763 24 14 -2.1313 -7.2576 -4.5644 25 1 -2.2960 -7.6491 -5.9874 26 1 -1.8613 -8.4669 -3.7459 27 1 -3.3746 -6.6026 -4.0846 28 1 -0.3634 0.0033 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5111 31 1 3.1391 3.9106 -0.0087 32 1 5.3791 5.2712 -0.0212 33 1 8.0974 3.7379 0.9953 34 1 8.2957 2.8698 -0.5459 35 1 7.8842 4.6016 -0.5464 36 1 0.6921 -2.5317 0.5254 37 1 2.3419 -3.1997 0.5191 38 1 2.2784 -6.1661 -2.9393 39 1 1.9598 -5.5654 -4.5845 40 1 2.9159 -4.5841 -3.4484 41 1 -0.2639 -6.0659 -6.3458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892692016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:01 Heat of formation + Delta-G solvation = 33.807648 kcal Electronic energy + Delta-G solvation = -25207.773656 eV Core-core repulsion = 21409.705708 eV Total energy + Delta-G solvation = -3798.067948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41358 -39.99691 -39.18945 -35.82003 -34.22460 -33.27934 -32.77206 -30.57317 -30.23523 -29.37268 -27.72485 -25.88737 -25.30018 -24.42622 -21.95859 -21.41175 -20.66132 -19.75125 -18.42551 -17.88812 -17.24243 -17.01230 -16.55758 -15.86980 -15.56067 -15.32653 -15.06248 -14.66659 -14.35543 -14.12655 -13.79222 -13.46724 -13.23447 -12.95173 -12.88469 -12.83610 -12.68910 -12.37267 -12.22986 -11.91461 -11.74642 -11.22183 -11.13254 -11.05856 -10.97249 -10.83963 -10.39736 -10.28038 -10.07725 -9.70704 -9.67981 -9.53715 -9.18777 -8.99848 -8.91568 -8.48906 -8.24708 -6.17994 -4.25254 0.32660 1.25984 1.59953 1.73871 2.05802 2.33956 2.96293 3.12779 3.26676 3.30190 3.32599 3.68307 3.74331 4.34204 4.35306 4.48893 4.69936 4.73587 4.82559 4.99890 5.03233 5.14843 5.23381 5.45606 5.50851 5.51558 5.59028 5.66571 5.77427 5.86655 5.95285 6.17755 6.32748 6.62880 6.64292 6.88914 6.91451 7.16190 7.23849 7.59676 7.71758 7.72695 7.93668 8.13861 8.62253 8.87385 9.40071 10.89335 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002293 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.364157 B =12206.275741 C =12643.401026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.079 3.921 3 N -0.442 5.442 4 C 0.132 3.868 5 C 0.141 3.859 6 C -0.224 4.224 7 C 0.050 3.950 8 N -0.367 5.367 9 C 0.101 3.899 10 N -0.273 5.273 11 S 0.141 5.859 12 C -0.194 4.194 13 C -0.041 4.041 14 C 0.451 3.549 15 O -0.509 6.509 16 O -0.355 6.355 17 C 0.216 3.784 18 H 0.047 0.953 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.037 0.963 39 H 0.099 0.901 40 H 0.015 0.985 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.409 18.521 14.203 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 N -0.158 5.158 4 C -0.144 4.144 5 C -0.025 4.025 6 C -0.255 4.255 7 C -0.094 4.094 8 N -0.151 5.151 9 C -0.040 4.040 10 N -0.100 5.100 11 S 0.398 5.602 12 C -0.316 4.316 13 C -0.081 4.081 14 C 0.292 3.708 15 O -0.398 6.398 16 O -0.272 6.272 17 C 0.164 3.836 18 H 0.065 0.935 19 C -0.213 4.213 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.199 1.199 27 H -0.200 1.200 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.056 0.944 39 H 0.118 0.882 40 H 0.034 0.966 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.415 17.862 13.674 26.192 hybrid contribution -2.015 0.032 -0.411 2.057 sum 11.399 17.894 13.263 25.021 Atomic orbital electron populations 1.20435 0.86838 1.04027 1.02788 1.19914 0.98265 0.85595 1.01690 1.66290 1.03635 1.30938 1.14923 1.23992 0.91292 0.93134 1.05998 1.19203 0.89668 0.91529 1.02115 1.21494 0.99640 0.90886 1.13507 1.22534 0.87154 0.97148 1.02596 1.48466 1.06844 1.03318 1.56501 1.21929 0.75894 1.02586 1.03624 1.77636 1.08158 0.99723 1.24454 1.84984 1.05308 1.02250 1.67609 1.25118 0.95605 0.99287 1.11631 1.19678 1.04112 0.90224 0.94108 1.23040 0.75144 0.81504 0.91089 1.90640 1.47004 1.55791 1.46396 1.86475 1.73332 1.30630 1.36714 1.20647 0.94783 0.95699 0.72486 0.93530 1.22164 0.95758 0.98609 1.04740 1.20981 1.13814 1.26881 0.94271 0.91305 1.24901 0.97260 0.96705 0.95166 1.69894 1.39871 1.43913 0.98986 0.86319 0.81830 0.80795 0.77095 1.21059 1.19930 1.19958 0.90475 0.90300 0.90432 0.82428 0.80223 0.90468 0.89016 0.89098 0.85792 0.86856 0.94409 0.88228 0.96556 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.76 36.00 0.35 -0.69 16 2 C 0.08 1.22 6.69 -84.39 -0.56 0.65 16 3 N -0.44 -7.03 10.51 -7.54 -0.08 -7.11 16 4 C 0.13 2.05 7.50 -14.28 -0.11 1.94 16 5 C 0.14 1.98 7.15 -82.88 -0.59 1.39 16 6 C -0.22 -2.51 10.74 -39.67 -0.43 -2.93 16 7 C 0.05 0.41 11.46 -17.26 -0.20 0.22 16 8 N -0.37 -3.46 4.01 -68.21 -0.27 -3.73 16 9 C 0.10 0.46 11.46 59.84 0.69 1.14 16 10 N -0.27 -3.66 12.62 33.36 0.42 -3.24 16 11 S 0.14 2.13 23.43 -107.50 -2.52 -0.39 16 12 C -0.19 -3.02 5.07 -35.91 -0.18 -3.20 16 13 C -0.04 -0.61 5.69 -29.04 -0.17 -0.77 16 14 C 0.45 9.34 7.92 36.00 0.29 9.62 16 15 O -0.51 -12.21 15.25 -18.75 -0.29 -12.49 16 16 O -0.36 -8.35 9.86 -39.26 -0.39 -8.74 16 17 C 0.22 5.83 2.56 -27.89 -0.07 5.76 16 18 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 19 C -0.15 -3.98 9.32 37.16 0.35 -3.64 16 20 C -0.52 -14.62 8.90 -34.44 -0.31 -14.93 16 21 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 24 Si 0.91 21.09 29.54 -169.99 -5.02 16.06 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.04 7.27 -51.93 -0.38 0.66 16 31 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 35 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.12 1.49 7.37 -51.93 -0.38 1.11 16 37 H 0.11 1.41 8.14 -51.92 -0.42 0.98 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -35.34 372.63 -8.16 -43.50 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.22 Total: -0.86 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.04 Total: -3.82 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.70 Total: -38.88 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.67 Total: -21.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.52 Total: -0.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.34 -8.16 -43.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892692016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.305 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds