Wall clock time and date at job start Tue Mar 31 2020 18:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31374 * 122.07900 * 2 1 4 4 C 1.30223 * 117.02691 * 180.28396 * 3 2 1 5 5 C 1.47888 * 125.47414 * 179.75321 * 4 3 2 6 6 C 1.41020 * 126.06317 * 0.02562 * 5 4 3 7 7 C 1.35027 * 107.84454 * 180.02562 * 6 5 4 8 8 N 1.35077 * 108.02578 * 359.97438 * 7 6 5 9 9 C 1.46491 * 125.91182 * 180.02562 * 8 7 6 10 10 N 1.31787 * 126.06552 * 179.69060 * 5 4 3 11 11 S 1.76179 * 109.04991 * 359.76034 * 4 3 2 12 12 C 1.33661 * 122.07340 * 179.82040 * 2 1 3 13 13 C 1.50699 * 125.88363 * 0.02562 * 12 2 1 14 14 C 1.50696 * 109.47593 * 89.71428 * 13 12 2 15 15 O 1.20830 * 119.99784 * 359.97438 * 14 13 12 16 16 O 1.34231 * 120.00448 * 179.97438 * 14 13 12 17 17 C 1.45198 * 117.00230 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.46912 * 330.00625 * 17 16 14 19 19 C 1.53000 * 109.46967 * 90.00189 * 17 16 14 20 20 C 1.50694 * 109.47115 * 210.00154 * 17 16 14 21 21 H 1.08000 * 120.00563 * 0.02562 * 20 17 16 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 16 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.08999 * 109.47351 * 270.18285 * 1 2 3 29 29 H 1.09002 * 109.47020 * 30.18147 * 1 2 3 30 30 H 1.09001 * 109.47140 * 150.17654 * 1 2 3 31 31 H 1.08002 * 126.08197 * 359.95291 * 6 5 4 32 32 H 1.07998 * 125.98813 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.47012 * 90.00665 * 9 8 7 34 34 H 1.09007 * 109.46900 * 209.99922 * 9 8 7 35 35 H 1.08999 * 109.47351 * 330.00429 * 9 8 7 36 36 H 1.09000 * 109.47363 * 329.70945 * 13 12 2 37 37 H 1.09008 * 109.47069 * 209.71699 * 13 12 2 38 38 H 1.09000 * 109.47156 * 59.99715 * 19 17 16 39 39 H 1.08997 * 109.47359 * 180.02562 * 19 17 16 40 40 H 1.09007 * 109.47356 * 299.99990 * 19 17 16 41 41 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2047 1.1132 0.0000 4 6 3.5018 0.9985 -0.0057 5 6 4.4628 2.1226 -0.0120 6 6 4.1357 3.4943 -0.0123 7 6 5.2900 4.1949 -0.0195 8 7 6.3137 3.3138 -0.0231 9 6 7.7389 3.6525 -0.0305 10 7 5.7766 2.0201 -0.0121 11 16 3.9280 -0.7110 -0.0051 12 6 2.2167 -1.1326 0.0036 13 6 1.6511 -2.5294 0.0074 14 6 1.4565 -2.9966 -1.4121 15 8 1.7469 -2.2696 -2.3325 16 8 0.9607 -4.2203 -1.6540 17 6 0.7997 -4.6031 -3.0453 18 1 0.6018 -3.7152 -3.6459 19 6 2.0804 -5.2783 -3.5399 20 6 -0.3552 -5.5628 -3.1718 21 1 -0.9128 -5.8555 -2.2944 22 6 -0.7001 -6.0674 -4.4078 23 7 -0.0215 -5.7106 -5.4763 24 14 -2.1313 -7.2576 -4.5644 25 1 -2.2960 -7.6491 -5.9874 26 1 -1.8613 -8.4669 -3.7459 27 1 -3.3746 -6.6026 -4.0846 28 1 -0.3634 0.0033 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3633 -0.8916 -0.5111 31 1 3.1391 3.9106 -0.0087 32 1 5.3791 5.2712 -0.0212 33 1 8.0974 3.7379 0.9953 34 1 8.2957 2.8698 -0.5459 35 1 7.8842 4.6016 -0.5464 36 1 0.6921 -2.5317 0.5254 37 1 2.3419 -3.1997 0.5191 38 1 2.2784 -6.1661 -2.9393 39 1 1.9598 -5.5654 -4.5845 40 1 2.9159 -4.5841 -3.4484 41 1 -0.2639 -6.0659 -6.3458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892692016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:00 Heat of formation + Delta-G solvation = 11.569719 kcal Electronic energy + Delta-G solvation = -25208.737965 eV Core-core repulsion = 21409.705708 eV Total energy + Delta-G solvation = -3799.032257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.20802 -41.49383 -40.61417 -37.67121 -35.34486 -35.15483 -33.80705 -31.86568 -31.31235 -30.96994 -28.50760 -27.48041 -27.01064 -25.39058 -23.71438 -22.28943 -21.60234 -21.51124 -19.54700 -19.05570 -18.81261 -18.52920 -17.98642 -17.24560 -16.93135 -16.59283 -16.40018 -16.16327 -15.66480 -14.99763 -14.78799 -14.63662 -14.56848 -14.33942 -14.02587 -13.88279 -13.67998 -13.63383 -13.26779 -13.21640 -13.20300 -13.04830 -12.94750 -12.80458 -12.39345 -12.17374 -12.16074 -11.94637 -11.60296 -11.47710 -11.01272 -10.89178 -10.85690 -10.59409 -10.33843 -9.85606 -9.27717 -8.28138 -6.45302 -0.81575 0.12076 0.58204 0.78628 1.30573 1.35850 1.40930 1.43254 1.46971 1.55069 1.99818 2.16152 2.44345 2.76913 3.02621 3.45760 3.70341 3.82699 3.92468 4.03645 4.10209 4.41708 4.42202 4.45564 4.53107 4.55919 4.65946 4.71769 4.74198 4.76368 4.77058 4.80382 4.83197 4.95698 5.14971 5.27719 5.34669 5.48541 5.61758 5.91324 6.03807 6.07969 6.38391 6.58819 6.60330 6.94592 7.26449 8.79367 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002293 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.364157 B =12206.275741 C =12643.401026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.072 3.928 3 N -0.459 5.459 4 C 0.134 3.866 5 C 0.106 3.894 6 C -0.248 4.248 7 C 0.076 3.924 8 N -0.361 5.361 9 C 0.089 3.911 10 N -0.310 5.310 11 S 0.127 5.873 12 C -0.213 4.213 13 C -0.027 4.027 14 C 0.448 3.552 15 O -0.547 6.547 16 O -0.358 6.358 17 C 0.218 3.782 18 H 0.006 0.994 19 C -0.143 4.143 20 C -0.546 4.546 21 H 0.072 0.928 22 C 0.014 3.986 23 N -0.919 5.919 24 Si 0.985 3.015 25 H -0.280 1.280 26 H -0.263 1.263 27 H -0.267 1.267 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.233 0.767 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.158 0.842 37 H 0.142 0.858 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.020 0.980 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.515 19.606 15.646 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 N -0.175 5.175 4 C -0.142 4.142 5 C -0.058 4.058 6 C -0.280 4.280 7 C -0.070 4.070 8 N -0.145 5.145 9 C -0.050 4.050 10 N -0.138 5.138 11 S 0.385 5.615 12 C -0.335 4.335 13 C -0.066 4.066 14 C 0.292 3.708 15 O -0.438 6.438 16 O -0.275 6.275 17 C 0.165 3.835 18 H 0.024 0.976 19 C -0.201 4.201 20 C -0.584 4.584 21 H 0.090 0.910 22 C -0.186 4.186 23 N -0.557 5.557 24 Si 0.807 3.193 25 H -0.205 1.205 26 H -0.187 1.187 27 H -0.191 1.191 28 H 0.126 0.874 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.178 0.822 32 H 0.249 0.751 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.160 0.840 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.541 18.940 15.144 27.775 hybrid contribution -1.875 -0.077 -0.854 2.061 sum 11.667 18.864 14.290 26.385 Atomic orbital electron populations 1.20516 0.85222 1.03583 1.04618 1.20378 0.99483 0.85562 1.00690 1.66354 1.03887 1.31186 1.16080 1.24441 0.91622 0.93632 1.04520 1.19346 0.89954 0.92225 1.04270 1.21720 1.01134 0.90047 1.15119 1.23252 0.85565 0.98975 0.99222 1.48935 1.08777 1.02297 1.54479 1.22382 0.73224 1.04120 1.05290 1.77543 1.08054 1.02487 1.25695 1.84917 1.05801 1.02834 1.67983 1.25186 0.95541 0.99565 1.13206 1.19796 1.06627 0.90205 0.90015 1.24192 0.73366 0.80010 0.93266 1.90625 1.48461 1.56383 1.48308 1.86464 1.74100 1.32434 1.34456 1.20331 0.95264 0.94020 0.73861 0.97626 1.21991 0.95481 0.98949 1.03630 1.21277 1.14609 1.27599 0.94891 0.91005 1.25880 0.99952 0.98244 0.94525 1.70027 1.41326 1.44797 0.99537 0.85207 0.78177 0.78509 0.77368 1.20488 1.18712 1.19132 0.87430 0.90269 0.91254 0.82188 0.75103 0.88741 0.89500 0.85397 0.82424 0.83979 0.93330 0.90153 0.96134 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.00 9.76 71.23 0.70 -1.30 16 2 C 0.07 2.24 6.69 41.59 0.28 2.51 16 3 N -0.46 -14.85 10.51 -177.78 -1.87 -16.72 16 4 C 0.13 4.27 7.50 87.49 0.66 4.93 16 5 C 0.11 3.03 7.15 42.39 0.30 3.33 16 6 C -0.25 -5.37 10.74 22.21 0.24 -5.13 16 7 C 0.08 1.03 11.46 83.45 0.96 1.99 16 8 N -0.36 -6.06 4.01 -369.72 -1.48 -7.55 16 9 C 0.09 0.55 11.46 127.77 1.46 2.02 16 10 N -0.31 -8.27 12.62 -48.36 -0.61 -8.88 16 11 S 0.13 3.94 23.43 -56.49 -1.32 2.61 16 12 C -0.21 -6.61 5.07 24.65 0.12 -6.49 16 13 C -0.03 -0.78 5.69 29.10 0.17 -0.61 16 14 C 0.45 18.77 7.92 71.23 0.56 19.33 16 15 O -0.55 -27.18 15.25 21.95 0.33 -26.84 16 16 O -0.36 -17.04 9.86 -51.43 -0.51 -17.54 16 17 C 0.22 12.13 2.56 29.85 0.08 12.21 16 18 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 19 C -0.14 -7.52 9.32 71.98 0.67 -6.85 16 20 C -0.55 -30.97 8.90 25.60 0.23 -30.74 16 21 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 22 C 0.01 0.75 5.30 84.66 0.45 1.20 16 23 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 24 Si 0.98 42.87 29.54 68.60 2.03 44.90 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.83 7.27 -2.39 -0.02 1.82 16 31 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.16 3.44 7.37 -2.39 -0.02 3.42 16 37 H 0.14 3.27 8.14 -2.38 -0.02 3.25 16 38 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 4.54 6.07 -2.39 -0.01 4.53 16 40 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -80.46 372.63 4.74 -75.72 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.06 Total: 11.11 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 6.87 Total: -3.60 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -3.72 Total: -86.36 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.17 Total: -44.39 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.32 Total: 2.61 kcal Total: -80.46 4.74 -75.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892692016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.291 kcal (2) G-P(sol) polarization free energy of solvation -80.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds