Wall clock time and date at job start Tue Mar 31 2020 18:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.50697 * 109.46964 * 185.08035 * 3 2 1 5 5 C 1.38262 * 119.99888 * 270.74087 * 4 3 2 6 6 C 1.38214 * 119.99530 * 180.27938 * 5 4 3 7 7 C 1.38256 * 120.00329 * 359.46428 * 6 5 4 8 8 C 1.38208 * 119.99812 * 0.56268 * 7 6 5 9 9 C 1.38211 * 120.00298 * 90.76317 * 4 3 2 10 10 S 1.76208 * 119.99745 * 359.97438 * 9 4 3 11 11 O 1.42096 * 106.40042 * 178.63139 * 10 9 4 12 12 O 1.42092 * 106.39949 * 311.55626 * 10 9 4 13 13 N 1.65604 * 107.21626 * 65.09520 * 10 9 4 14 14 C 1.40575 * 119.99988 * 62.40786 * 13 10 9 15 15 C 1.40654 * 126.07460 * 45.31775 * 14 13 10 16 16 N 1.30926 * 108.40385 * 179.97438 * 15 14 13 17 17 N 1.40073 * 108.40126 * 359.97438 * 16 15 14 18 18 C 1.37312 * 126.08157 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00210 * 185.49609 * 18 17 16 20 20 C 1.38978 * 119.99633 * 5.50088 * 18 17 16 21 21 N 1.31297 * 120.00518 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99745 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47336 * 59.99726 * 22 20 18 24 24 H 1.48497 * 109.47254 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47064 * 299.99730 * 22 20 18 26 26 C 1.35632 * 126.07441 * 225.00939 * 14 13 10 27 27 H 1.08995 * 109.47169 * 64.93263 * 1 2 3 28 28 H 1.09003 * 109.46916 * 184.92619 * 1 2 3 29 29 H 1.08996 * 109.46917 * 304.92937 * 1 2 3 30 30 H 1.09001 * 109.46718 * 240.00073 * 2 1 3 31 31 H 1.09000 * 109.47117 * 120.00395 * 2 1 3 32 32 H 1.09003 * 109.46887 * 65.08044 * 3 2 1 33 33 H 1.09000 * 109.46872 * 305.07784 * 3 2 1 34 34 H 1.07995 * 120.00051 * 0.02562 * 5 4 3 35 35 H 1.08004 * 119.99472 * 179.72550 * 6 5 4 36 36 H 1.07997 * 120.00109 * 180.27107 * 7 6 5 37 37 H 1.07999 * 119.99762 * 179.72329 * 8 7 6 38 38 H 0.96995 * 120.00190 * 242.40894 * 13 10 9 39 39 H 1.08002 * 125.79738 * 0.04145 * 15 14 13 40 40 H 0.96996 * 120.00685 * 179.97438 * 21 20 18 41 41 H 1.08002 * 126.25131 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5417 1.4443 -0.1258 5 6 4.3306 1.3943 1.0086 6 6 5.7079 1.4018 0.8934 7 6 6.2968 1.4481 -0.3566 8 6 5.5083 1.4986 -1.4905 9 6 4.1305 1.4964 -1.3751 10 16 3.1252 1.5600 -2.8209 11 8 4.0156 1.6379 -3.9256 12 8 2.1517 0.5349 -2.6780 13 7 2.3013 2.9960 -2.7822 14 6 3.0061 4.2119 -2.8159 15 6 4.0737 4.5267 -3.6758 16 7 4.4708 5.7462 -3.4124 17 7 3.6754 6.2566 -2.3785 18 6 3.7801 7.5063 -1.8192 19 1 3.1734 7.7682 -0.9650 20 6 4.6669 8.4341 -2.3524 21 7 5.4048 8.1156 -3.3907 22 14 4.8089 10.1344 -1.5920 23 1 5.2309 10.0087 -0.1738 24 1 5.8170 10.9283 -2.3394 25 1 3.4921 10.8177 -1.6579 26 6 2.7737 5.2918 -2.0290 27 1 -0.3633 0.4354 -0.9308 28 1 -0.3633 -1.0239 0.0883 29 1 -0.3633 0.5884 0.8425 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7529 1.9293 0.9320 33 1 1.6043 1.9819 -0.8410 34 1 3.8705 1.3535 1.9848 35 1 6.3240 1.3672 1.7797 36 1 7.3730 1.4495 -0.4468 37 1 5.9684 1.5393 -2.4668 38 1 1.3325 2.9982 -2.7363 39 1 4.4939 3.8739 -4.4266 40 1 6.0234 8.7633 -3.7631 41 1 2.0149 5.3737 -1.2647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901613064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:54 Heat of formation + Delta-G solvation = 25.460610 kcal Electronic energy + Delta-G solvation = -27256.145738 eV Core-core repulsion = 23457.715835 eV Total energy + Delta-G solvation = -3798.429903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.59124 -39.35384 -36.99484 -35.47939 -35.02392 -34.45134 -33.06539 -31.16777 -31.01089 -30.30865 -27.45387 -26.44596 -24.83565 -23.12088 -22.29819 -20.89691 -20.78205 -19.98717 -19.09459 -18.00678 -17.17934 -16.91001 -16.12986 -15.71688 -15.52865 -15.17772 -14.69393 -14.46089 -14.15702 -13.93220 -13.70429 -13.52083 -13.35966 -13.07638 -12.59562 -12.29463 -12.15022 -12.04019 -11.89725 -11.82361 -11.70039 -11.63140 -11.46471 -11.25139 -11.11667 -10.93354 -10.90386 -10.62690 -10.52932 -10.36405 -10.00746 -9.38329 -9.21617 -8.85039 -8.69496 -8.19323 -7.06302 -6.64059 -4.34939 0.74938 1.05600 1.41482 2.91743 3.00414 3.04455 3.32359 3.46760 3.63759 3.79460 4.06398 4.11779 4.60128 4.66464 4.74068 4.88807 4.94060 5.07275 5.09829 5.15481 5.32215 5.48243 5.50935 5.62946 5.78356 5.85356 5.88959 5.99287 6.08255 6.13642 6.22980 6.26847 6.29468 6.38642 6.44078 6.45808 6.56522 6.82575 6.96623 7.08775 7.26776 7.55131 7.77085 8.13081 8.58989 9.26328 9.51882 10.31783 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.003945 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.613751 B = 7096.024970 C = 7308.885881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.103 4.103 4 C 0.024 3.976 5 C -0.144 4.144 6 C -0.067 4.067 7 C -0.147 4.147 8 C -0.012 4.012 9 C -0.660 4.660 10 S 2.687 3.313 11 O -0.958 6.958 12 O -0.969 6.969 13 N -1.012 6.012 14 C -0.063 4.063 15 C -0.041 4.041 16 N -0.252 5.252 17 N -0.141 5.141 18 C -0.324 4.324 19 H 0.117 0.883 20 C 0.048 3.952 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.058 4.058 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.142 0.858 38 H 0.410 0.590 39 H 0.169 0.831 40 H 0.277 0.723 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -11.062 8.564 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.141 4.141 4 C 0.022 3.978 5 C -0.163 4.163 6 C -0.085 4.085 7 C -0.166 4.166 8 C -0.031 4.031 9 C -0.746 4.746 10 S 2.778 3.222 11 O -0.948 6.948 12 O -0.959 6.959 13 N -0.766 5.766 14 C -0.172 4.172 15 C -0.219 4.219 16 N -0.082 5.082 17 N 0.092 4.908 18 C -0.456 4.456 19 H 0.134 0.866 20 C -0.169 4.169 21 N -0.395 5.395 22 Si 0.758 3.242 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.211 4.211 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.245 0.755 39 H 0.186 0.814 40 H 0.087 0.913 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.588 -10.708 7.439 13.293 hybrid contribution -0.544 0.525 1.379 1.572 sum -3.132 -10.183 8.818 13.830 Atomic orbital electron populations 1.21719 0.95589 1.01380 1.01811 1.21636 0.96155 0.94947 1.03319 1.21008 0.90158 0.99079 1.03832 1.19478 0.95542 0.91027 0.91715 1.21066 0.93815 1.03305 0.98095 1.21365 0.94942 0.94605 0.97621 1.21232 1.00164 1.02628 0.92602 1.20971 0.91609 0.90534 0.99998 1.30790 1.08472 1.17511 1.17801 1.02421 0.73343 0.72293 0.74141 1.93533 1.66207 1.86084 1.49003 1.93536 1.60013 1.55216 1.87134 1.52123 1.16172 1.18712 1.89559 1.16715 1.05463 0.88557 1.06422 1.24052 1.00212 0.95915 1.01711 1.78254 1.16234 1.07824 1.05848 1.44621 1.16809 1.08949 1.20382 1.19855 1.25371 0.85812 1.14591 0.86552 1.25638 0.95169 1.00573 0.95551 1.70177 1.17269 1.34812 1.17281 0.85894 0.78914 0.80041 0.79333 1.19142 1.20075 1.19092 1.21661 1.01595 0.91992 1.05827 0.92100 0.92874 0.93281 0.88872 0.92582 0.89934 0.90758 0.85595 0.85682 0.85385 0.84072 0.75466 0.81412 0.91259 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.49 5.42 -26.73 -0.14 -1.63 16 3 C -0.10 -1.33 4.58 -27.89 -0.13 -1.46 16 4 C 0.02 0.35 5.13 -104.62 -0.54 -0.19 16 5 C -0.14 -1.87 9.71 -39.58 -0.38 -2.26 16 6 C -0.07 -0.84 10.05 -39.58 -0.40 -1.24 16 7 C -0.15 -2.03 10.05 -39.59 -0.40 -2.43 16 8 C -0.01 -0.19 9.55 -39.59 -0.38 -0.57 16 9 C -0.66 -10.85 5.79 -39.58 -0.23 -11.08 16 10 S 2.69 46.16 4.88 -107.50 -0.52 45.64 16 11 O -0.96 -19.06 14.93 -57.17 -0.85 -19.92 16 12 O -0.97 -16.32 14.03 -57.17 -0.80 -17.12 16 13 N -1.01 -17.44 4.77 32.32 0.15 -17.29 16 14 C -0.06 -1.35 6.52 -83.87 -0.55 -1.89 16 15 C -0.04 -0.99 11.21 -17.03 -0.19 -1.18 16 16 N -0.25 -6.91 10.42 30.81 0.32 -6.59 16 17 N -0.14 -3.68 3.74 -11.40 -0.04 -3.72 16 18 C -0.32 -8.22 10.25 -14.82 -0.15 -8.37 16 19 H 0.12 2.64 7.83 -52.49 -0.41 2.23 16 20 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 21 N -0.77 -20.66 11.83 55.49 0.66 -20.00 16 22 Si 0.93 18.28 29.55 -169.99 -5.02 13.26 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 26 C -0.06 -1.29 11.50 -16.36 -0.19 -1.48 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 1.31 5.93 -51.93 -0.31 1.00 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 33 H 0.07 0.98 5.09 -51.93 -0.26 0.71 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.14 2.22 7.33 -52.49 -0.38 1.83 16 38 H 0.41 5.84 8.64 -34.47 -0.30 5.54 16 39 H 0.17 3.93 6.86 -52.49 -0.36 3.57 16 40 H 0.28 6.82 8.31 -40.82 -0.34 6.49 16 41 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -32.05 353.51 -9.15 -41.20 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -4.96 Total: 13.08 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: -3.40 Total: -33.87 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.09 Total: -47.60 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.66 Total: -37.04 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Atomic # 16 Polarization: 46.16 SS G_CDS: -0.52 Total: 45.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.05 -9.15 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901613064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.666 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds