Wall clock time and date at job start Tue Mar 31 2020 18:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 C 1.50697 * 109.46964 * 185.08035 * 3 2 1 5 5 C 1.38262 * 119.99888 * 270.74087 * 4 3 2 6 6 C 1.38214 * 119.99530 * 180.27938 * 5 4 3 7 7 C 1.38256 * 120.00329 * 359.46428 * 6 5 4 8 8 C 1.38208 * 119.99812 * 0.56268 * 7 6 5 9 9 C 1.38211 * 120.00298 * 90.76317 * 4 3 2 10 10 S 1.76208 * 119.99745 * 359.97438 * 9 4 3 11 11 O 1.42096 * 106.40042 * 178.63139 * 10 9 4 12 12 O 1.42092 * 106.39949 * 311.55626 * 10 9 4 13 13 N 1.65604 * 107.21626 * 65.09520 * 10 9 4 14 14 C 1.40575 * 119.99988 * 62.40786 * 13 10 9 15 15 C 1.40654 * 126.07460 * 45.31775 * 14 13 10 16 16 N 1.30926 * 108.40385 * 179.97438 * 15 14 13 17 17 N 1.40073 * 108.40126 * 359.97438 * 16 15 14 18 18 C 1.37312 * 126.08157 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00210 * 185.49609 * 18 17 16 20 20 C 1.38978 * 119.99633 * 5.50088 * 18 17 16 21 21 N 1.31297 * 120.00518 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99745 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47336 * 59.99726 * 22 20 18 24 24 H 1.48497 * 109.47254 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47064 * 299.99730 * 22 20 18 26 26 C 1.35632 * 126.07441 * 225.00939 * 14 13 10 27 27 H 1.08995 * 109.47169 * 64.93263 * 1 2 3 28 28 H 1.09003 * 109.46916 * 184.92619 * 1 2 3 29 29 H 1.08996 * 109.46917 * 304.92937 * 1 2 3 30 30 H 1.09001 * 109.46718 * 240.00073 * 2 1 3 31 31 H 1.09000 * 109.47117 * 120.00395 * 2 1 3 32 32 H 1.09003 * 109.46887 * 65.08044 * 3 2 1 33 33 H 1.09000 * 109.46872 * 305.07784 * 3 2 1 34 34 H 1.07995 * 120.00051 * 0.02562 * 5 4 3 35 35 H 1.08004 * 119.99472 * 179.72550 * 6 5 4 36 36 H 1.07997 * 120.00109 * 180.27107 * 7 6 5 37 37 H 1.07999 * 119.99762 * 179.72329 * 8 7 6 38 38 H 0.96995 * 120.00190 * 242.40894 * 13 10 9 39 39 H 1.08002 * 125.79738 * 0.04145 * 15 14 13 40 40 H 0.96996 * 120.00685 * 179.97438 * 21 20 18 41 41 H 1.08002 * 126.25131 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5417 1.4443 -0.1258 5 6 4.3306 1.3943 1.0086 6 6 5.7079 1.4018 0.8934 7 6 6.2968 1.4481 -0.3566 8 6 5.5083 1.4986 -1.4905 9 6 4.1305 1.4964 -1.3751 10 16 3.1252 1.5600 -2.8209 11 8 4.0156 1.6379 -3.9256 12 8 2.1517 0.5349 -2.6780 13 7 2.3013 2.9960 -2.7822 14 6 3.0061 4.2119 -2.8159 15 6 4.0737 4.5267 -3.6758 16 7 4.4708 5.7462 -3.4124 17 7 3.6754 6.2566 -2.3785 18 6 3.7801 7.5063 -1.8192 19 1 3.1734 7.7682 -0.9650 20 6 4.6669 8.4341 -2.3524 21 7 5.4048 8.1156 -3.3907 22 14 4.8089 10.1344 -1.5920 23 1 5.2309 10.0087 -0.1738 24 1 5.8170 10.9283 -2.3394 25 1 3.4921 10.8177 -1.6579 26 6 2.7737 5.2918 -2.0290 27 1 -0.3633 0.4354 -0.9308 28 1 -0.3633 -1.0239 0.0883 29 1 -0.3633 0.5884 0.8425 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.7529 1.9293 0.9320 33 1 1.6043 1.9819 -0.8410 34 1 3.8705 1.3535 1.9848 35 1 6.3240 1.3672 1.7797 36 1 7.3730 1.4495 -0.4468 37 1 5.9684 1.5393 -2.4668 38 1 1.3325 2.9982 -2.7363 39 1 4.4939 3.8739 -4.4266 40 1 6.0234 8.7633 -3.7631 41 1 2.0149 5.3737 -1.2647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901613064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:53 Heat of formation + Delta-G solvation = 5.311019 kcal Electronic energy + Delta-G solvation = -27257.019490 eV Core-core repulsion = 23457.715835 eV Total energy + Delta-G solvation = -3799.303655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43342 -40.42551 -38.40240 -36.93908 -36.35159 -35.80333 -34.80676 -32.23320 -32.21049 -32.01508 -29.24351 -27.41114 -26.68269 -24.23833 -23.28891 -22.64535 -21.93201 -21.64912 -20.59343 -19.56476 -18.51406 -18.43028 -17.55507 -17.32759 -16.80475 -16.51962 -15.98020 -15.63479 -15.55950 -15.22568 -15.14268 -14.90599 -14.68283 -14.54236 -13.78395 -13.59419 -13.50455 -13.36946 -13.31745 -13.17577 -13.09644 -12.93717 -12.82931 -12.67566 -12.65988 -12.13836 -12.02753 -11.97223 -11.85904 -11.45930 -11.33949 -11.14262 -10.67407 -10.31739 -10.11608 -9.76449 -8.84390 -8.46362 -6.27052 -0.59556 -0.10597 0.33420 1.31855 1.41705 1.57143 1.76809 1.92076 2.18337 2.21146 2.49043 2.74548 2.91838 3.09482 3.46694 3.64430 3.82712 4.00115 4.17765 4.25081 4.31165 4.37306 4.45537 4.54539 4.57464 4.68974 4.73463 4.80399 4.90684 4.99055 4.99719 5.03909 5.15960 5.26100 5.27603 5.34005 5.39368 5.45318 5.51112 5.60989 5.92852 5.92868 6.08977 6.35650 6.75989 7.43961 7.62924 8.52413 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.003945 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.613751 B = 7096.024970 C = 7308.885881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.108 4.108 4 C 0.013 3.987 5 C -0.145 4.145 6 C -0.062 4.062 7 C -0.156 4.156 8 C -0.042 4.042 9 C -0.679 4.679 10 S 2.701 3.299 11 O -0.993 6.993 12 O -0.965 6.965 13 N -1.007 6.007 14 C -0.040 4.040 15 C -0.061 4.061 16 N -0.299 5.299 17 N -0.165 5.165 18 C -0.354 4.354 19 H 0.140 0.860 20 C -0.001 4.001 21 N -0.822 5.822 22 Si 1.015 2.985 23 H -0.255 1.255 24 H -0.279 1.279 25 H -0.254 1.254 26 C -0.054 4.054 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.424 0.576 39 H 0.166 0.834 40 H 0.277 0.723 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -11.085 12.094 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.145 4.145 4 C 0.012 3.988 5 C -0.164 4.164 6 C -0.080 4.080 7 C -0.175 4.175 8 C -0.062 4.062 9 C -0.768 4.768 10 S 2.795 3.205 11 O -0.983 6.983 12 O -0.955 6.955 13 N -0.762 5.762 14 C -0.149 4.149 15 C -0.239 4.239 16 N -0.129 5.129 17 N 0.067 4.933 18 C -0.486 4.486 19 H 0.157 0.843 20 C -0.213 4.213 21 N -0.450 5.450 22 Si 0.834 3.166 23 H -0.179 1.179 24 H -0.203 1.203 25 H -0.178 1.178 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.263 0.737 39 H 0.183 0.817 40 H 0.087 0.913 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.796 -10.746 10.946 15.802 hybrid contribution -0.221 0.299 0.343 0.506 sum -4.017 -10.447 11.288 15.897 Atomic orbital electron populations 1.21735 0.94487 1.02283 1.02063 1.21623 0.97144 0.94385 1.02924 1.21135 0.88932 0.99670 1.04793 1.19819 0.96814 0.90694 0.91483 1.21531 0.94054 1.01844 0.98936 1.21863 0.95433 0.92417 0.98242 1.21571 1.01257 1.02101 0.92560 1.21094 0.92080 0.92376 1.00622 1.30505 1.08374 1.20079 1.17828 1.01632 0.73024 0.71902 0.73978 1.93491 1.67080 1.86428 1.51291 1.93549 1.60106 1.54594 1.87263 1.52014 1.17050 1.17338 1.89762 1.16621 1.04080 0.89562 1.04658 1.24163 1.01586 0.95567 1.02570 1.78159 1.18095 1.09150 1.07511 1.44866 1.17747 1.09928 1.20775 1.20552 1.26365 0.86002 1.15632 0.84283 1.26788 0.94167 1.04789 0.95578 1.70350 1.18688 1.36480 1.19451 0.84710 0.79150 0.74225 0.78523 1.17906 1.20347 1.17782 1.22306 1.01301 0.91150 1.05898 0.93126 0.91996 0.91497 0.91381 0.90885 0.87414 0.91573 0.82184 0.81896 0.83313 0.85372 0.73725 0.81703 0.91304 0.79914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.12 -2.69 5.42 30.59 0.17 -2.53 16 3 C -0.11 -2.49 4.58 29.85 0.14 -2.35 16 4 C 0.01 0.36 5.13 -19.87 -0.10 0.26 16 5 C -0.15 -3.25 9.71 22.27 0.22 -3.04 16 6 C -0.06 -1.34 10.05 22.27 0.22 -1.12 16 7 C -0.16 -4.10 10.05 22.27 0.22 -3.88 16 8 C -0.04 -1.38 9.55 22.27 0.21 -1.16 16 9 C -0.68 -22.18 5.79 22.27 0.13 -22.05 16 10 S 2.70 94.00 4.88 -56.49 -0.28 93.72 16 11 O -0.99 -41.30 14.93 -128.00 -1.91 -43.21 16 12 O -0.97 -32.42 14.03 -128.00 -1.80 -34.21 16 13 N -1.01 -34.39 4.77 -51.65 -0.25 -34.63 16 14 C -0.04 -1.74 6.52 37.72 0.25 -1.50 16 15 C -0.06 -3.10 11.21 85.42 0.96 -2.14 16 16 N -0.30 -17.04 10.42 -56.45 -0.59 -17.62 16 17 N -0.17 -8.72 3.74 -189.98 -0.71 -9.43 16 18 C -0.35 -17.98 10.25 84.01 0.86 -17.12 16 19 H 0.14 6.11 7.83 -2.91 -0.02 6.09 16 20 C 0.00 -0.05 5.50 84.95 0.47 0.42 16 21 N -0.82 -45.66 11.83 21.66 0.26 -45.41 16 22 Si 1.01 37.16 29.55 68.60 2.03 39.19 16 23 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 24 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 26 C -0.05 -2.38 11.50 83.35 0.96 -1.42 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.84 5.93 -2.39 -0.01 1.82 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 1.93 8.09 -2.39 -0.02 1.91 16 33 H 0.07 1.61 5.09 -2.39 -0.01 1.60 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.13 4.34 7.33 -2.91 -0.02 4.32 16 38 H 0.42 11.67 8.64 -96.75 -0.84 10.83 16 39 H 0.17 8.23 6.86 -2.91 -0.02 8.21 16 40 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.18 6.48 8.06 -2.91 -0.02 6.45 16 Total: -1.00 -72.43 353.51 2.40 -70.03 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: 0.23 Total: 41.27 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 5.41 Total: -59.69 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -1.29 Total: -107.09 kcal Atomic # 8 Polarization: -73.72 SS G_CDS: -3.71 Total: -77.43 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: 94.00 SS G_CDS: -0.28 Total: 93.72 kcal Total: -72.43 2.40 -70.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901613064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.337 kcal (2) G-P(sol) polarization free energy of solvation -72.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds