Wall clock time and date at job start Tue Mar 31 2020 18:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47437 * 2 1 4 4 N 1.46501 * 109.47224 * 119.99864 * 2 1 3 5 5 S 1.65601 * 119.99919 * 305.50518 * 4 2 1 6 6 O 1.42100 * 106.39984 * 179.97438 * 5 4 2 7 7 O 1.42104 * 106.40129 * 47.03566 * 5 4 2 8 8 C 1.76193 * 107.22083 * 293.49206 * 5 4 2 9 9 C 1.37638 * 120.13027 * 116.65103 * 8 5 4 10 10 C 1.38611 * 120.25193 * 180.30235 * 9 8 5 11 11 C 1.38662 * 120.49783 * 359.43972 * 10 9 8 12 12 C 1.37595 * 120.24838 * 0.56177 * 11 10 9 13 13 C 1.40697 * 120.12751 * 296.67738 * 8 5 4 14 14 C 1.41403 * 120.24317 * 359.95379 * 13 8 5 15 15 H 1.07992 * 119.99740 * 326.11626 * 14 13 8 16 16 C 1.39948 * 119.99635 * 146.12136 * 14 13 8 17 17 N 1.30829 * 119.99348 * 168.00547 * 16 14 13 18 18 Si 1.86797 * 120.00257 * 348.00011 * 16 14 13 19 19 H 1.48496 * 109.47261 * 87.53106 * 18 16 14 20 20 H 1.48498 * 109.46825 * 207.52998 * 18 16 14 21 21 H 1.48498 * 109.47101 * 327.52854 * 18 16 14 22 22 C 1.50707 * 109.47070 * 239.99777 * 2 1 3 23 23 N 1.30499 * 125.64750 * 240.02581 * 22 2 1 24 24 C 1.34125 * 109.25359 * 180.02562 * 23 22 2 25 25 C 1.34673 * 108.02373 * 359.97438 * 24 23 22 26 26 N 1.35043 * 125.64919 * 59.71883 * 22 2 1 27 27 H 0.96998 * 126.39570 * 359.97438 * 26 22 2 28 28 H 1.08997 * 109.46868 * 309.91666 * 1 2 3 29 29 H 1.09000 * 109.47101 * 69.91745 * 1 2 3 30 30 H 1.08996 * 109.47247 * 189.91884 * 1 2 3 31 31 H 1.09000 * 109.47646 * 174.06120 * 3 2 1 32 32 H 1.09007 * 109.47099 * 294.05906 * 3 2 1 33 33 H 1.08993 * 109.47469 * 54.05531 * 3 2 1 34 34 H 0.96998 * 120.00106 * 125.50206 * 4 2 1 35 35 H 1.08003 * 119.87251 * 0.02562 * 9 8 5 36 36 H 1.07996 * 119.75342 * 179.70053 * 10 9 8 37 37 H 1.07995 * 119.87633 * 180.30034 * 11 10 9 38 38 H 1.08002 * 120.12825 * 179.74150 * 12 11 10 39 39 H 0.97001 * 119.99540 * 179.97438 * 17 16 14 40 40 H 1.08003 * 125.99517 * 180.02562 * 24 23 22 41 41 H 1.07999 * 126.59334 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 1.5090 -0.2086 2.6964 6 8 2.1519 -1.0633 3.6321 7 8 0.0974 -0.0671 2.6147 8 6 2.1559 1.4068 2.9728 9 6 1.3025 2.4754 3.1286 10 6 1.8088 3.7484 3.3399 11 6 3.1776 3.9589 3.4084 12 6 4.0494 2.9054 3.2555 13 6 3.5468 1.6095 3.0346 14 6 4.4332 0.5192 2.8764 15 1 4.1561 -0.4590 3.2405 16 6 5.6694 0.7079 2.2481 17 7 6.5823 -0.2273 2.3067 18 14 6.0157 2.2949 1.3258 19 1 6.5610 3.3057 2.2671 20 1 7.0057 2.0359 0.2496 21 1 4.7559 2.8046 0.7272 22 6 2.0323 -0.7105 -1.2305 23 7 2.7853 -1.7763 -1.2392 24 6 3.0364 -2.1301 -2.5083 25 6 2.4149 -1.2505 -3.3169 26 7 1.7730 -0.3531 -2.5067 27 1 1.2343 0.4002 -2.7953 28 1 -0.3633 0.6594 0.7882 29 1 -0.3633 0.3529 -0.9652 30 1 -0.3633 -1.0123 0.1770 31 1 3.1248 1.4443 0.1063 32 1 1.7661 1.9247 -0.9384 33 1 1.5925 1.9861 0.8319 34 1 2.6399 -1.4301 1.1094 35 1 0.2345 2.3222 3.0815 36 1 1.1320 4.5818 3.4562 37 1 3.5610 4.9541 3.5783 38 1 5.1153 3.0723 3.3050 39 1 7.4390 -0.0967 1.8710 40 1 3.6318 -2.9732 -2.8263 41 1 2.4189 -1.2546 -4.3968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919420658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:40 Heat of formation + Delta-G solvation = -13.229648 kcal Electronic energy + Delta-G solvation = -28504.004276 eV Core-core repulsion = 24703.896637 eV Total energy + Delta-G solvation = -3800.107638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.04538 -39.67592 -38.56447 -37.63436 -36.69921 -35.58987 -33.60550 -32.46713 -31.92199 -31.43508 -29.70550 -28.20566 -27.14974 -24.05767 -23.64674 -22.89712 -22.17490 -21.33877 -19.96268 -19.52502 -19.38627 -18.34783 -17.83950 -17.19584 -16.87182 -16.07429 -16.00675 -15.84187 -15.50421 -15.23269 -15.08595 -14.73981 -14.60591 -14.44171 -14.40051 -14.13866 -13.81347 -13.59883 -13.39763 -13.04149 -12.88831 -12.82883 -12.73469 -12.60936 -12.48248 -12.30595 -12.00264 -11.88098 -11.65743 -11.24813 -11.03551 -10.98308 -10.94215 -10.41202 -9.85054 -9.53218 -9.29351 -8.94701 -6.71313 -0.19251 0.37110 0.81230 1.13962 1.20671 1.33493 1.42032 2.02714 2.08276 2.21364 2.37193 2.54543 2.95328 3.28243 3.39865 3.75156 3.80422 4.09070 4.22362 4.29667 4.33433 4.36453 4.52658 4.62895 4.65798 4.69828 4.76011 4.82324 4.92428 4.94596 5.13635 5.22242 5.25295 5.33234 5.40176 5.43125 5.59974 5.74874 5.84686 5.87392 6.11256 6.17182 6.35032 6.54505 6.55857 6.71637 7.22333 8.10736 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.006938 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.318492 B = 4035.006110 C = 5029.035147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.271 3.729 3 C -0.182 4.182 4 N -1.095 6.095 5 S 2.718 3.282 6 O -1.014 7.014 7 O -0.987 6.987 8 C -0.769 4.769 9 C 0.005 3.995 10 C -0.237 4.237 11 C -0.038 4.038 12 C -0.260 4.260 13 C 0.160 3.840 14 C -0.488 4.488 15 H 0.085 0.915 16 C 0.057 3.943 17 N -0.828 5.828 18 Si 0.955 3.045 19 H -0.254 1.254 20 H -0.285 1.285 21 H -0.234 1.234 22 C 0.202 3.798 23 N -0.526 5.526 24 C -0.066 4.066 25 C -0.027 4.027 26 N -0.547 5.547 27 H 0.436 0.564 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.421 0.579 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.296 0.704 40 H 0.180 0.820 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 6.839 -13.801 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.180 3.820 3 C -0.241 4.241 4 N -0.854 5.854 5 S 2.815 3.185 6 O -1.004 7.004 7 O -0.977 6.977 8 C -0.863 4.863 9 C -0.015 4.015 10 C -0.256 4.256 11 C -0.057 4.057 12 C -0.280 4.280 13 C 0.155 3.845 14 C -0.516 4.516 15 H 0.103 0.897 16 C -0.161 4.161 17 N -0.452 5.452 18 Si 0.778 3.222 19 H -0.179 1.179 20 H -0.212 1.212 21 H -0.156 1.156 22 C -0.064 4.064 23 N -0.246 5.246 24 C -0.213 4.213 25 C -0.162 4.162 26 N -0.152 5.152 27 H 0.277 0.723 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.257 0.743 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.197 0.803 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.977 5.808 -12.576 16.507 hybrid contribution 1.251 0.742 -0.888 1.704 sum -7.726 6.551 -13.464 16.849 Atomic orbital electron populations 1.22685 0.90948 1.04378 1.05208 1.18401 0.94263 0.90126 0.79183 1.22721 1.02360 0.94073 1.04982 1.55216 1.62864 1.46742 1.20544 1.00412 0.72389 0.74084 0.71642 1.93475 1.77380 1.67945 1.61631 1.93443 1.29904 1.87728 1.86668 1.30066 1.02679 1.20857 1.32706 1.20761 0.98498 0.91952 0.90268 1.21036 0.95028 0.96852 1.12719 1.21301 0.93929 0.98010 0.92429 1.21466 0.99107 0.94380 1.13022 1.17157 0.90248 0.92647 0.84440 1.20095 1.00075 0.97905 1.33570 0.89719 1.26834 0.93796 1.00617 0.94840 1.69700 1.05594 1.35763 1.34107 0.85732 0.79979 0.78208 0.78298 1.17905 1.21174 1.15644 1.22738 1.01159 0.95987 0.86554 1.70009 1.16305 1.13144 1.25117 1.22789 1.06605 1.03859 0.88071 1.23358 1.00744 0.93017 0.99078 1.43042 1.40622 1.26146 1.05371 0.72297 0.88788 0.88491 0.92211 0.93157 0.88462 0.89883 0.74314 0.84419 0.83944 0.84525 0.87663 0.89345 0.80323 0.75962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 7.46 71.98 0.54 -4.14 16 2 C 0.27 8.71 1.11 2.86 0.00 8.71 16 3 C -0.18 -5.64 7.74 71.98 0.56 -5.08 16 4 N -1.10 -44.31 5.33 -155.19 -0.83 -45.13 16 5 S 2.72 120.25 4.98 -56.49 -0.28 119.97 16 6 O -1.01 -54.42 15.82 -128.00 -2.03 -56.45 16 7 O -0.99 -40.73 13.49 -128.00 -1.73 -42.46 16 8 C -0.77 -33.55 3.65 22.73 0.08 -33.47 16 9 C 0.00 0.18 8.18 22.22 0.18 0.36 16 10 C -0.24 -7.82 10.05 22.46 0.23 -7.59 16 11 C -0.04 -1.36 10.02 22.22 0.22 -1.14 16 12 C -0.26 -11.29 7.18 22.73 0.16 -11.13 16 13 C 0.16 7.69 5.06 -21.29 -0.11 7.58 16 14 C -0.49 -26.55 8.59 23.46 0.20 -26.35 16 15 H 0.08 5.21 5.85 -2.91 -0.02 5.19 16 16 C 0.06 2.97 5.46 85.26 0.47 3.44 16 17 N -0.83 -44.99 13.93 21.83 0.30 -44.69 16 18 Si 0.95 40.31 24.36 68.60 1.67 41.98 16 19 H -0.25 -10.06 6.44 99.48 0.64 -9.42 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.23 -9.42 6.31 99.48 0.63 -8.79 16 22 C 0.20 6.14 6.46 138.13 0.89 7.04 16 23 N -0.53 -18.72 10.16 -188.12 -1.91 -20.63 16 24 C -0.07 -1.80 11.87 83.52 0.99 -0.80 16 25 C -0.03 -0.52 12.04 83.09 1.00 0.48 16 26 N -0.55 -11.00 6.10 -186.26 -1.14 -12.14 16 27 H 0.44 5.22 8.96 -92.71 -0.83 4.39 16 28 H 0.09 2.69 6.00 -2.39 -0.01 2.67 16 29 H 0.10 1.75 8.06 -2.39 -0.02 1.73 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.87 7.30 -2.39 -0.02 1.85 16 32 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.08 2.64 4.84 -2.39 -0.01 2.63 16 34 H 0.42 18.54 7.79 -96.75 -0.75 17.79 16 35 H 0.14 4.41 7.33 -2.91 -0.02 4.39 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.11 4.58 4.62 -2.91 -0.01 4.56 16 39 H 0.30 14.48 8.30 -92.71 -0.77 13.71 16 40 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.22 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -73.59 336.45 -1.14 -74.74 By element: Atomic # 1 Polarization: 47.52 SS G_CDS: -0.63 Total: 46.89 kcal Atomic # 6 Polarization: -67.50 SS G_CDS: 5.42 Total: -62.08 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -3.57 Total: -122.59 kcal Atomic # 8 Polarization: -95.15 SS G_CDS: -3.75 Total: -98.90 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.67 Total: 41.98 kcal Atomic # 16 Polarization: 120.25 SS G_CDS: -0.28 Total: 119.97 kcal Total: -73.59 -1.14 -74.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919420658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.505 kcal (2) G-P(sol) polarization free energy of solvation -73.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds