Wall clock time and date at job start Tue Mar 31 2020 19:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46550 * 2 1 4 4 N 1.46492 * 109.47595 * 239.99592 * 2 1 3 5 5 C 1.34779 * 120.00282 * 84.99587 * 4 2 1 6 6 O 1.21591 * 119.99576 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00509 * 179.97438 * 5 4 2 8 8 C 1.46491 * 120.00056 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47507 * 325.00144 * 8 7 5 10 10 C 1.50702 * 109.46957 * 205.00172 * 8 7 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.52996 * 109.47168 * 85.00588 * 8 7 5 19 19 F 1.39901 * 109.47523 * 179.97438 * 18 8 7 20 20 F 1.39899 * 109.47041 * 299.99558 * 18 8 7 21 21 F 1.39900 * 109.47321 * 59.99577 * 18 8 7 22 22 C 1.50701 * 109.46669 * 119.99392 * 2 1 3 23 23 C 1.38230 * 120.40678 * 79.73029 * 22 2 1 24 24 N 1.31846 * 120.82273 * 179.72203 * 23 22 2 25 25 C 1.31866 * 121.74729 * 0.53638 * 24 23 22 26 26 C 1.38422 * 120.73106 * 359.75283 * 25 24 23 27 27 F 1.35101 * 120.44826 * 179.97438 * 26 25 24 28 28 C 1.38587 * 120.40404 * 260.00118 * 22 2 1 29 29 H 1.08999 * 109.47074 * 300.00579 * 1 2 3 30 30 H 1.08999 * 109.46694 * 60.00454 * 1 2 3 31 31 H 1.09002 * 109.46550 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99950 * 265.00174 * 4 2 1 33 33 H 0.97003 * 119.99723 * 0.02562 * 7 5 4 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 35 35 H 1.08000 * 119.58880 * 359.97438 * 23 22 2 36 36 H 1.08009 * 119.63574 * 179.72858 * 25 24 23 37 37 H 1.08000 * 120.80353 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1614 -2.4117 7 7 2.5970 -0.6537 -3.4574 8 6 2.7374 0.0772 -4.7192 9 1 1.9410 0.8167 -4.8013 10 6 2.6467 -0.8890 -5.8721 11 1 2.4988 -1.9422 -5.6838 12 6 2.7462 -0.4277 -7.1677 13 7 2.9260 0.8547 -7.3970 14 14 2.6261 -1.6244 -8.5969 15 1 1.3086 -2.3088 -8.5601 16 1 2.7636 -0.8829 -9.8762 17 1 3.7109 -2.6329 -8.4908 18 6 4.0943 0.7834 -4.7512 19 9 4.2287 1.4809 -5.9565 20 9 4.1786 1.6804 -3.6810 21 9 5.1166 -0.1658 -4.6458 22 6 2.0323 -0.7103 1.2306 23 6 2.0650 -2.0914 1.2768 24 7 2.5079 -2.7212 2.3471 25 6 2.9250 -2.0677 3.4138 26 6 2.9164 -0.6839 3.4437 27 9 3.3446 -0.0201 4.5398 28 6 2.4617 0.0132 2.3319 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 2.2492 -1.6318 -1.1524 33 1 2.8278 -1.5948 -3.4137 34 1 2.9964 1.1792 -8.3085 35 1 1.7275 -2.6617 0.4240 36 1 3.2769 -2.6183 4.2738 37 1 2.4429 1.0930 2.3258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932898159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:59 Heat of formation + Delta-G solvation = -174.142218 kcal Electronic energy + Delta-G solvation = -29268.546495 eV Core-core repulsion = 24353.391247 eV Total energy + Delta-G solvation = -4915.155247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.31723 -48.33566 -45.98856 -45.60465 -40.74929 -39.36376 -36.13529 -34.52470 -32.92028 -32.46326 -31.23080 -29.71993 -27.95616 -24.82675 -24.53499 -24.18129 -22.27554 -21.08070 -20.24111 -18.71315 -17.81815 -17.49680 -17.16755 -16.80296 -16.79244 -16.59665 -16.16214 -16.04415 -15.17642 -14.92438 -14.66339 -14.49018 -14.16628 -13.87104 -13.65595 -13.48386 -13.20995 -12.99369 -12.90579 -12.62522 -12.52117 -12.38812 -12.27515 -11.99668 -11.96780 -11.81229 -11.58209 -11.17750 -10.88472 -10.82294 -10.41805 -10.15459 -9.95338 -9.70223 -9.63726 -9.28232 -8.97020 -8.73377 -8.23311 -6.25118 -4.49223 0.50045 0.68281 2.96785 3.18788 3.23817 3.24914 3.27630 3.61594 3.69746 4.01118 4.17339 4.22464 4.37272 4.48367 4.55744 4.70763 4.86974 4.92423 5.00902 5.16938 5.37626 5.43213 5.53870 5.65848 5.82303 5.88233 5.90558 6.13988 6.21224 6.21448 6.63896 6.79105 7.14951 7.31404 7.41580 7.59110 7.63528 8.46524 8.58287 9.09061 9.20931 10.66596 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.002910 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.540150 B = 9621.139717 C = 9961.551967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.207 3.793 3 H 0.103 0.897 4 N -0.750 5.750 5 C 0.701 3.299 6 O -0.581 6.581 7 N -0.725 5.725 8 C 0.263 3.737 9 H 0.086 0.914 10 C -0.553 4.553 11 H 0.077 0.923 12 C 0.065 3.935 13 N -0.840 5.840 14 Si 0.915 3.085 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.415 3.585 19 F -0.138 7.138 20 F -0.217 7.217 21 F -0.210 7.210 22 C -0.107 4.107 23 C 0.096 3.904 24 N -0.452 5.452 25 C 0.070 3.930 26 C 0.052 3.948 27 F -0.129 7.129 28 C -0.098 4.098 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.392 0.608 33 H 0.395 0.605 34 H 0.269 0.731 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -4.897 16.761 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.100 3.900 3 H 0.121 0.879 4 N -0.407 5.407 5 C 0.401 3.599 6 O -0.458 6.458 7 N -0.377 5.377 8 C 0.157 3.843 9 H 0.103 0.897 10 C -0.590 4.590 11 H 0.095 0.905 12 C -0.144 4.144 13 N -0.473 5.473 14 Si 0.742 3.258 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.359 3.641 19 F -0.119 7.119 20 F -0.199 7.199 21 F -0.192 7.192 22 C -0.109 4.109 23 C -0.062 4.062 24 N -0.159 5.159 25 C -0.089 4.089 26 C 0.030 3.970 27 F -0.108 7.108 28 C -0.125 4.125 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.080 0.920 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.503 -4.486 16.544 17.324 hybrid contribution 0.650 -0.242 -0.459 0.832 sum -1.853 -4.728 16.086 16.868 Atomic orbital electron populations 1.22215 0.93815 1.02558 1.03186 1.19479 0.94188 0.96652 0.79673 0.87929 1.45213 1.73328 1.13421 1.08781 1.16013 0.78467 0.85186 0.80195 1.90925 1.56656 1.13976 1.84230 1.45269 1.69399 1.13753 1.09268 1.19603 0.89555 0.94183 0.80951 0.89654 1.20839 1.55158 0.94051 0.88986 0.90517 1.25075 0.93959 0.95897 0.99423 1.70389 1.42607 1.12774 1.21485 0.86270 0.78889 0.80347 0.80312 1.19788 1.20884 1.19834 1.23184 0.90101 0.77303 0.73532 1.93400 1.96081 1.79806 1.42588 1.93070 1.97080 1.70885 1.58842 1.92986 1.64288 1.65881 1.96054 1.20995 0.98616 0.95111 0.96204 1.22675 0.95826 0.91316 0.96352 1.67768 1.08730 1.39823 0.99573 1.22946 0.98343 0.89650 0.97923 1.18778 1.01454 0.91814 0.84913 1.91538 1.87342 1.80762 1.51144 1.21569 0.97254 1.02001 0.91651 0.91739 0.90591 0.92226 0.77360 0.77189 0.92039 0.81941 0.81526 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.46 37.16 0.35 -1.29 16 2 C 0.21 2.36 2.79 -69.08 -0.19 2.16 16 3 H 0.10 1.34 7.47 -51.93 -0.39 0.96 16 4 N -0.75 -9.87 5.03 -59.81 -0.30 -10.17 16 5 C 0.70 13.07 8.06 -86.92 -0.70 12.37 16 6 O -0.58 -13.09 14.58 5.29 0.08 -13.02 16 7 N -0.72 -14.15 4.99 -59.82 -0.30 -14.44 16 8 C 0.26 6.38 2.21 -69.09 -0.15 6.23 16 9 H 0.09 2.32 7.58 -51.93 -0.39 1.93 16 10 C -0.55 -13.78 8.46 -34.44 -0.29 -14.07 16 11 H 0.08 1.79 7.74 -52.49 -0.41 1.38 16 12 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 13 N -0.84 -22.71 9.51 55.43 0.53 -22.18 16 14 Si 0.92 19.75 29.54 -169.99 -5.02 14.73 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 C 0.42 10.54 2.81 37.16 0.10 10.64 16 19 F -0.14 -3.78 12.93 2.25 0.03 -3.75 16 20 F -0.22 -5.48 15.67 2.25 0.04 -5.44 16 21 F -0.21 -5.14 16.94 2.25 0.04 -5.11 16 22 C -0.11 -1.03 4.96 -104.50 -0.52 -1.55 16 23 C 0.10 0.90 10.22 -17.55 -0.18 0.72 16 24 N -0.45 -4.59 10.36 -13.20 -0.14 -4.72 16 25 C 0.07 0.62 11.17 -17.47 -0.20 0.43 16 26 C 0.05 0.48 7.35 -39.27 -0.29 0.19 16 27 F -0.13 -1.24 17.28 2.25 0.04 -1.20 16 28 C -0.10 -0.90 9.81 -39.21 -0.38 -1.28 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.39 4.07 6.93 -40.82 -0.28 3.79 16 33 H 0.39 6.56 8.55 -40.82 -0.35 6.21 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.16 1.22 6.94 -52.49 -0.36 0.86 16 36 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -30.80 334.72 -5.94 -36.74 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.43 Total: 7.39 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: -2.54 Total: 16.13 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.21 Total: -51.52 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 9 Polarization: -15.64 SS G_CDS: 0.14 Total: -15.50 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.80 -5.94 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.399 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds