Wall clock time and date at job start Tue Mar 31 2020 19:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46550 * 2 1 4 4 N 1.46492 * 109.47595 * 239.99592 * 2 1 3 5 5 C 1.34779 * 120.00282 * 84.99587 * 4 2 1 6 6 O 1.21591 * 119.99576 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00509 * 179.97438 * 5 4 2 8 8 C 1.46491 * 120.00056 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47507 * 325.00144 * 8 7 5 10 10 C 1.50702 * 109.46957 * 205.00172 * 8 7 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 7 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.52996 * 109.47168 * 85.00588 * 8 7 5 19 19 F 1.39901 * 109.47523 * 179.97438 * 18 8 7 20 20 F 1.39899 * 109.47041 * 299.99558 * 18 8 7 21 21 F 1.39900 * 109.47321 * 59.99577 * 18 8 7 22 22 C 1.50701 * 109.46669 * 119.99392 * 2 1 3 23 23 C 1.38230 * 120.40678 * 79.73029 * 22 2 1 24 24 N 1.31846 * 120.82273 * 179.72203 * 23 22 2 25 25 C 1.31866 * 121.74729 * 0.53638 * 24 23 22 26 26 C 1.38422 * 120.73106 * 359.75283 * 25 24 23 27 27 F 1.35101 * 120.44826 * 179.97438 * 26 25 24 28 28 C 1.38587 * 120.40404 * 260.00118 * 22 2 1 29 29 H 1.08999 * 109.47074 * 300.00579 * 1 2 3 30 30 H 1.08999 * 109.46694 * 60.00454 * 1 2 3 31 31 H 1.09002 * 109.46550 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99950 * 265.00174 * 4 2 1 33 33 H 0.97003 * 119.99723 * 0.02562 * 7 5 4 34 34 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 35 35 H 1.08000 * 119.58880 * 359.97438 * 23 22 2 36 36 H 1.08009 * 119.63574 * 179.72858 * 25 24 23 37 37 H 1.08000 * 120.80353 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1614 -2.4117 7 7 2.5970 -0.6537 -3.4574 8 6 2.7374 0.0772 -4.7192 9 1 1.9410 0.8167 -4.8013 10 6 2.6467 -0.8890 -5.8721 11 1 2.4988 -1.9422 -5.6838 12 6 2.7462 -0.4277 -7.1677 13 7 2.9260 0.8547 -7.3970 14 14 2.6261 -1.6244 -8.5969 15 1 1.3086 -2.3088 -8.5601 16 1 2.7636 -0.8829 -9.8762 17 1 3.7109 -2.6329 -8.4908 18 6 4.0943 0.7834 -4.7512 19 9 4.2287 1.4809 -5.9565 20 9 4.1786 1.6804 -3.6810 21 9 5.1166 -0.1658 -4.6458 22 6 2.0323 -0.7103 1.2306 23 6 2.0650 -2.0914 1.2768 24 7 2.5079 -2.7212 2.3471 25 6 2.9250 -2.0677 3.4138 26 6 2.9164 -0.6839 3.4437 27 9 3.3446 -0.0201 4.5398 28 6 2.4617 0.0132 2.3319 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 2.2492 -1.6318 -1.1524 33 1 2.8278 -1.5948 -3.4137 34 1 2.9964 1.1792 -8.3085 35 1 1.7275 -2.6617 0.4240 36 1 3.2769 -2.6183 4.2738 37 1 2.4429 1.0930 2.3258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932898159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:59 Heat of formation + Delta-G solvation = -194.724964 kcal Electronic energy + Delta-G solvation = -29269.439029 eV Core-core repulsion = 24353.391247 eV Total energy + Delta-G solvation = -4916.047782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.37811 -50.04022 -48.01243 -47.69254 -41.63080 -40.68844 -37.33045 -36.20962 -34.52383 -33.59574 -32.20037 -30.71516 -29.57970 -26.56261 -25.63986 -24.91941 -23.78466 -22.40145 -21.66725 -20.16906 -18.98214 -18.82349 -18.58791 -18.53082 -18.20484 -17.89105 -17.57441 -16.89815 -16.82568 -16.38818 -16.11833 -15.67996 -15.12753 -14.97379 -14.91479 -14.82464 -14.60300 -14.43415 -14.38336 -14.25133 -14.18626 -14.00039 -13.93203 -13.81989 -13.43835 -13.02493 -12.84039 -12.74298 -12.59209 -12.44005 -12.19659 -11.57082 -11.26809 -10.91574 -10.70255 -10.65290 -10.33322 -10.00640 -9.81733 -8.18665 -6.49209 -0.21962 -0.04661 1.48706 1.51344 1.58762 1.69292 2.15223 2.39038 2.51219 2.59852 2.87744 2.97589 3.24064 3.31506 3.52794 3.70566 3.77525 3.82500 3.91204 4.10642 4.14127 4.22065 4.28374 4.61891 4.72907 4.78691 4.85602 4.88846 5.03743 5.27420 5.45966 5.48980 5.51499 5.56434 5.68172 6.10263 6.55999 6.70416 7.16105 7.22275 7.65778 8.73958 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.002910 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.540150 B = 9621.139717 C = 9961.551967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.209 3.791 3 H 0.084 0.916 4 N -0.728 5.728 5 C 0.700 3.300 6 O -0.623 6.623 7 N -0.720 5.720 8 C 0.272 3.728 9 H 0.049 0.951 10 C -0.561 4.561 11 H 0.093 0.907 12 C 0.016 3.984 13 N -0.875 5.875 14 Si 0.982 3.018 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.411 3.589 19 F -0.152 7.152 20 F -0.219 7.219 21 F -0.204 7.204 22 C -0.110 4.110 23 C 0.097 3.903 24 N -0.468 5.468 25 C 0.074 3.926 26 C 0.045 3.955 27 F -0.132 7.132 28 C -0.098 4.098 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.409 0.591 33 H 0.410 0.590 34 H 0.268 0.732 35 H 0.181 0.819 36 H 0.191 0.809 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 -7.109 17.732 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.103 3.897 3 H 0.102 0.898 4 N -0.386 5.386 5 C 0.400 3.600 6 O -0.503 6.503 7 N -0.373 5.373 8 C 0.164 3.836 9 H 0.066 0.934 10 C -0.598 4.598 11 H 0.111 0.889 12 C -0.190 4.190 13 N -0.509 5.509 14 Si 0.806 3.194 15 H -0.186 1.186 16 H -0.212 1.212 17 H -0.191 1.191 18 C 0.355 3.645 19 F -0.133 7.133 20 F -0.201 7.201 21 F -0.186 7.186 22 C -0.112 4.112 23 C -0.060 4.060 24 N -0.175 5.175 25 C -0.084 4.084 26 C 0.024 3.976 27 F -0.111 7.111 28 C -0.125 4.125 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.247 0.753 34 H 0.078 0.922 35 H 0.198 0.802 36 H 0.208 0.792 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.648 -6.761 17.579 19.019 hybrid contribution 0.709 0.469 -0.636 1.062 sum -1.938 -6.291 16.943 18.177 Atomic orbital electron populations 1.22153 0.92788 1.03488 1.02740 1.19505 0.94952 0.95784 0.79484 0.89829 1.45013 1.71954 1.14060 1.07544 1.16151 0.78054 0.84767 0.81065 1.90899 1.58313 1.16070 1.85030 1.44986 1.69801 1.14259 1.08296 1.19158 0.87698 0.93661 0.83064 0.93370 1.21207 1.54568 0.94829 0.89200 0.88859 1.25982 0.93457 0.97380 1.02169 1.70527 1.43815 1.14684 1.21863 0.85229 0.79358 0.78125 0.76717 1.18624 1.21210 1.19109 1.23403 0.90827 0.77323 0.72984 1.93371 1.96208 1.80202 1.43543 1.93061 1.97129 1.71066 1.58818 1.92983 1.64088 1.65538 1.95998 1.20725 0.99828 0.95227 0.95460 1.22937 0.95099 0.91174 0.96760 1.67847 1.09522 1.40103 1.00059 1.23342 0.97123 0.89695 0.98252 1.18816 1.01897 0.92046 0.84865 1.91534 1.87431 1.80852 1.51245 1.21731 0.96552 1.02708 0.91531 0.89843 0.93356 0.90577 0.75370 0.75341 0.92213 0.80248 0.79235 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.46 71.98 0.68 -2.30 16 2 C 0.21 4.54 2.79 44.25 0.12 4.66 16 3 H 0.08 2.19 7.47 -2.39 -0.02 2.17 16 4 N -0.73 -18.27 5.03 -461.41 -2.32 -20.59 16 5 C 0.70 25.96 8.06 179.05 1.44 27.41 16 6 O -0.62 -28.75 14.58 -4.00 -0.06 -28.80 16 7 N -0.72 -27.75 4.99 -461.43 -2.30 -30.05 16 8 C 0.27 13.34 2.21 44.25 0.10 13.44 16 9 H 0.05 2.74 7.58 -2.39 -0.02 2.72 16 10 C -0.56 -27.62 8.46 25.60 0.22 -27.41 16 11 H 0.09 4.18 7.74 -2.91 -0.02 4.15 16 12 C 0.02 0.79 5.20 84.66 0.44 1.23 16 13 N -0.87 -47.99 9.51 21.45 0.20 -47.78 16 14 Si 0.98 39.78 29.54 68.60 2.03 41.81 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 18 C 0.41 21.11 2.81 71.98 0.20 21.31 16 19 F -0.15 -8.53 12.93 44.97 0.58 -7.95 16 20 F -0.22 -11.24 15.67 44.97 0.70 -10.53 16 21 F -0.20 -9.90 16.94 44.97 0.76 -9.14 16 22 C -0.11 -1.92 4.96 -19.78 -0.10 -2.02 16 23 C 0.10 1.58 10.22 84.69 0.87 2.45 16 24 N -0.47 -8.34 10.36 -195.66 -2.03 -10.37 16 25 C 0.07 1.15 11.17 84.73 0.95 2.09 16 26 C 0.05 0.75 7.35 22.47 0.17 0.92 16 27 F -0.13 -2.32 17.28 44.97 0.78 -1.54 16 28 C -0.10 -1.65 9.81 22.51 0.22 -1.43 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.41 7.57 6.93 -92.71 -0.64 6.93 16 33 H 0.41 12.99 8.55 -92.71 -0.79 12.19 16 34 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 35 H 0.18 2.15 6.94 -2.91 -0.02 2.13 16 36 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -66.64 334.72 3.38 -63.26 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.27 Total: 21.36 kcal Atomic # 6 Polarization: 35.04 SS G_CDS: 5.31 Total: 40.35 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -6.45 Total: -108.80 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.06 Total: -28.80 kcal Atomic # 9 Polarization: -31.99 SS G_CDS: 2.83 Total: -29.17 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -66.64 3.38 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.468 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds