Wall clock time and date at job start Tue Mar 31 2020 19:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46953 * 2 1 4 4 N 1.46502 * 109.46750 * 240.00222 * 2 1 3 5 5 C 1.34777 * 119.99867 * 85.00058 * 4 2 1 6 6 O 1.21581 * 120.00341 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99481 * 179.97438 * 5 4 2 8 8 C 1.46508 * 119.99518 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47180 * 34.99762 * 8 7 5 10 10 C 1.50705 * 109.46687 * 155.00060 * 8 7 5 11 11 H 1.07995 * 120.00456 * 5.39192 * 10 8 7 12 12 C 1.37883 * 119.99475 * 185.39164 * 10 8 7 13 13 N 1.31511 * 119.99836 * 20.76000 * 12 10 8 14 14 Si 1.86795 * 119.99706 * 201.03044 * 12 10 8 15 15 H 1.48499 * 109.46932 * 179.72448 * 14 12 10 16 16 H 1.48501 * 109.47463 * 299.72853 * 14 12 10 17 17 H 1.48505 * 109.47183 * 59.73086 * 14 12 10 18 18 C 1.52995 * 109.46810 * 274.99615 * 8 7 5 19 19 F 1.39900 * 109.47777 * 294.83664 * 18 8 7 20 20 F 1.39899 * 109.47381 * 54.83710 * 18 8 7 21 21 F 1.39906 * 109.47024 * 174.83452 * 18 8 7 22 22 C 1.50698 * 109.47253 * 120.00231 * 2 1 3 23 23 C 1.38228 * 120.40479 * 79.72432 * 22 2 1 24 24 N 1.31854 * 120.81529 * 179.72394 * 23 22 2 25 25 C 1.31859 * 121.75365 * 0.53850 * 24 23 22 26 26 C 1.38432 * 120.72799 * 359.75005 * 25 24 23 27 27 F 1.35095 * 120.44438 * 179.97438 * 26 25 24 28 28 C 1.38589 * 120.40292 * 260.00008 * 22 2 1 29 29 H 1.08992 * 109.47185 * 59.99801 * 1 2 3 30 30 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46595 * 299.99892 * 1 2 3 32 32 H 0.97001 * 120.00154 * 264.99310 * 4 2 1 33 33 H 0.97001 * 120.00540 * 359.97438 * 7 5 4 34 34 H 0.96996 * 120.00222 * 355.81587 * 13 12 10 35 35 H 1.08001 * 119.59288 * 0.02562 * 23 22 2 36 36 H 1.07996 * 119.64017 * 179.72671 * 25 24 23 37 37 H 1.08005 * 120.80120 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1614 -2.4119 7 7 2.5967 -0.6534 -3.4575 8 6 2.7360 0.0774 -4.7196 9 1 3.0459 1.1019 -4.5140 10 6 3.7731 -0.5983 -5.5794 11 1 4.2147 -1.5308 -5.2605 12 6 4.1580 -0.0259 -6.7732 13 7 3.9583 1.2572 -6.9818 14 14 4.9561 -1.0743 -8.0972 15 1 5.2675 -0.2287 -9.2775 16 1 6.2105 -1.6684 -7.5691 17 1 4.0248 -2.1595 -8.4977 18 6 1.3936 0.0882 -5.4535 19 9 1.0526 -1.2178 -5.8215 20 9 0.4055 0.6082 -4.6106 21 9 1.4950 0.8842 -6.5995 22 6 2.0324 -0.7104 1.2304 23 6 2.0651 -2.0916 1.2764 24 7 2.5081 -2.7214 2.3467 25 6 2.9253 -2.0681 3.4134 26 6 2.9168 -0.6841 3.4435 27 9 3.3450 -0.0206 4.5396 28 6 2.4619 0.0129 2.3318 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 2.8280 -1.5944 -3.4138 34 1 3.4861 1.7881 -6.3216 35 1 1.7282 -2.6618 0.4233 36 1 3.2772 -2.6187 4.2732 37 1 2.4431 1.0928 2.3258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932898160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:02 Heat of formation + Delta-G solvation = -194.076671 kcal Electronic energy + Delta-G solvation = -29252.815058 eV Core-core repulsion = 24336.795388 eV Total energy + Delta-G solvation = -4916.019670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.35510 -48.78551 -46.32036 -46.25468 -40.80358 -39.47921 -36.24998 -34.76042 -33.03991 -32.53465 -31.26511 -29.74229 -27.83269 -24.83725 -24.48671 -24.22611 -22.39916 -21.29129 -20.41155 -18.80214 -17.99597 -17.60047 -17.36160 -17.16323 -17.08469 -16.95771 -16.42788 -16.18807 -15.52953 -14.73532 -14.61408 -14.28689 -14.07325 -13.91620 -13.72396 -13.52717 -13.37339 -13.27549 -13.09027 -12.90922 -12.75629 -12.64812 -12.60245 -12.46180 -12.31670 -12.02335 -11.64635 -11.35878 -11.07392 -10.82537 -10.22706 -10.20541 -9.99579 -9.80437 -9.51400 -9.33257 -9.06387 -8.47385 -8.41930 -6.77509 -4.54000 0.45719 0.63944 2.86748 3.20825 3.29485 3.35906 3.52495 3.53278 3.60917 3.96162 4.15742 4.18091 4.28605 4.33047 4.43717 4.56305 4.81320 4.90312 4.94907 5.11393 5.32911 5.38996 5.44136 5.49253 5.56693 5.61114 5.68360 5.84678 6.10159 6.17284 6.52195 6.55376 6.96961 7.10913 7.37214 7.45737 8.05696 8.37902 8.45783 8.97694 9.17608 10.59434 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.002928 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.650680 B = 9561.462915 C =10127.252925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.207 3.793 3 H 0.103 0.897 4 N -0.748 5.748 5 C 0.702 3.298 6 O -0.583 6.583 7 N -0.719 5.719 8 C 0.252 3.748 9 H 0.080 0.920 10 C -0.639 4.639 11 H 0.073 0.927 12 C 0.040 3.960 13 N -0.856 5.856 14 Si 1.072 2.928 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.281 1.281 18 C 0.414 3.586 19 F -0.195 7.195 20 F -0.206 7.206 21 F -0.178 7.178 22 C -0.107 4.107 23 C 0.096 3.904 24 N -0.451 5.451 25 C 0.071 3.929 26 C 0.052 3.948 27 F -0.129 7.129 28 C -0.098 4.098 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.397 0.603 34 H 0.279 0.721 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -5.962 16.979 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 H 0.121 0.879 4 N -0.406 5.406 5 C 0.402 3.598 6 O -0.460 6.460 7 N -0.371 5.371 8 C 0.145 3.855 9 H 0.097 0.903 10 C -0.675 4.675 11 H 0.091 0.909 12 C -0.173 4.173 13 N -0.486 5.486 14 Si 0.898 3.102 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.207 1.207 18 C 0.357 3.643 19 F -0.177 7.177 20 F -0.187 7.187 21 F -0.160 7.160 22 C -0.110 4.110 23 C -0.062 4.062 24 N -0.159 5.159 25 C -0.088 4.088 26 C 0.031 3.969 27 F -0.107 7.107 28 C -0.125 4.125 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.227 0.773 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.239 -5.630 15.430 16.741 hybrid contribution -0.782 0.079 1.684 1.858 sum -4.021 -5.551 17.113 18.435 Atomic orbital electron populations 1.22218 0.93772 1.02616 1.03249 1.19486 0.94244 0.96591 0.79616 0.87928 1.45192 1.73160 1.13448 1.08778 1.16008 0.78244 0.85270 0.80244 1.90916 1.56522 1.14156 1.84378 1.45088 1.69384 1.14035 1.08594 1.19618 0.88191 0.97423 0.80274 0.90299 1.21663 1.26348 1.12105 1.07350 0.90873 1.25998 0.96282 0.96369 0.98650 1.70749 1.32968 1.04912 1.39928 0.83495 0.76040 0.75056 0.75597 1.20365 1.21031 1.20698 1.23125 0.89853 0.72601 0.78686 1.93024 1.93677 1.38600 1.92392 1.93091 1.66858 1.87177 1.71605 1.93146 1.96190 1.74180 1.52454 1.20976 0.98718 0.95116 0.96188 1.22671 0.95824 0.91296 0.96368 1.67769 1.08702 1.39818 0.99563 1.22957 0.98259 0.89653 0.97912 1.18776 1.01416 0.91817 0.84907 1.91539 1.87323 1.80761 1.51119 1.21560 0.97263 1.01987 0.91650 0.90583 0.92212 0.91646 0.77268 0.76905 0.90912 0.81985 0.81476 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.46 37.16 0.35 -1.33 16 2 C 0.21 2.33 2.79 -69.08 -0.19 2.14 16 3 H 0.10 1.30 7.47 -51.93 -0.39 0.92 16 4 N -0.75 -9.74 5.03 -59.81 -0.30 -10.04 16 5 C 0.70 12.95 7.95 -86.92 -0.69 12.26 16 6 O -0.58 -12.94 14.62 5.29 0.08 -12.87 16 7 N -0.72 -13.95 5.03 -59.81 -0.30 -14.25 16 8 C 0.25 6.03 1.92 -69.08 -0.13 5.90 16 9 H 0.08 2.11 6.61 -51.93 -0.34 1.77 16 10 C -0.64 -16.07 8.21 -34.44 -0.28 -16.35 16 11 H 0.07 1.76 7.80 -52.49 -0.41 1.35 16 12 C 0.04 1.04 4.72 -17.82 -0.08 0.95 16 13 N -0.86 -24.00 12.43 55.43 0.69 -23.31 16 14 Si 1.07 23.20 29.95 -169.99 -5.09 18.11 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 C 0.41 10.07 2.82 37.16 0.10 10.18 16 19 F -0.20 -4.59 16.87 2.25 0.04 -4.56 16 20 F -0.21 -4.90 15.54 2.25 0.04 -4.87 16 21 F -0.18 -4.67 14.13 2.25 0.03 -4.64 16 22 C -0.11 -1.01 4.96 -104.50 -0.52 -1.53 16 23 C 0.10 0.88 10.22 -17.55 -0.18 0.70 16 24 N -0.45 -4.51 10.36 -13.20 -0.14 -4.64 16 25 C 0.07 0.62 11.17 -17.47 -0.20 0.42 16 26 C 0.05 0.47 7.35 -39.27 -0.29 0.18 16 27 F -0.13 -1.20 17.28 2.25 0.04 -1.17 16 28 C -0.10 -0.87 9.81 -39.21 -0.38 -1.26 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.39 4.04 6.92 -40.82 -0.28 3.75 16 33 H 0.40 6.60 8.54 -40.82 -0.35 6.25 16 34 H 0.28 7.96 6.04 -40.82 -0.25 7.71 16 35 H 0.16 1.21 6.94 -52.49 -0.36 0.84 16 36 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -31.05 334.83 -5.66 -36.71 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.29 Total: 8.21 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -2.49 Total: 12.26 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.05 Total: -52.25 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 0.14 Total: -15.23 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.09 Total: 18.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.05 -5.66 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.363 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds