Wall clock time and date at job start Tue Mar 31 2020 19:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46953 * 2 1 4 4 N 1.46502 * 109.46750 * 240.00222 * 2 1 3 5 5 C 1.34777 * 119.99867 * 85.00058 * 4 2 1 6 6 O 1.21581 * 120.00341 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99481 * 179.97438 * 5 4 2 8 8 C 1.46508 * 119.99518 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47180 * 34.99762 * 8 7 5 10 10 C 1.50705 * 109.46687 * 155.00060 * 8 7 5 11 11 H 1.07995 * 120.00456 * 5.39192 * 10 8 7 12 12 C 1.37883 * 119.99475 * 185.39164 * 10 8 7 13 13 N 1.31511 * 119.99836 * 20.76000 * 12 10 8 14 14 Si 1.86795 * 119.99706 * 201.03044 * 12 10 8 15 15 H 1.48499 * 109.46932 * 179.72448 * 14 12 10 16 16 H 1.48501 * 109.47463 * 299.72853 * 14 12 10 17 17 H 1.48505 * 109.47183 * 59.73086 * 14 12 10 18 18 C 1.52995 * 109.46810 * 274.99615 * 8 7 5 19 19 F 1.39900 * 109.47777 * 294.83664 * 18 8 7 20 20 F 1.39899 * 109.47381 * 54.83710 * 18 8 7 21 21 F 1.39906 * 109.47024 * 174.83452 * 18 8 7 22 22 C 1.50698 * 109.47253 * 120.00231 * 2 1 3 23 23 C 1.38228 * 120.40479 * 79.72432 * 22 2 1 24 24 N 1.31854 * 120.81529 * 179.72394 * 23 22 2 25 25 C 1.31859 * 121.75365 * 0.53850 * 24 23 22 26 26 C 1.38432 * 120.72799 * 359.75005 * 25 24 23 27 27 F 1.35095 * 120.44438 * 179.97438 * 26 25 24 28 28 C 1.38589 * 120.40292 * 260.00008 * 22 2 1 29 29 H 1.08992 * 109.47185 * 59.99801 * 1 2 3 30 30 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46595 * 299.99892 * 1 2 3 32 32 H 0.97001 * 120.00154 * 264.99310 * 4 2 1 33 33 H 0.97001 * 120.00540 * 359.97438 * 7 5 4 34 34 H 0.96996 * 120.00222 * 355.81587 * 13 12 10 35 35 H 1.08001 * 119.59288 * 0.02562 * 23 22 2 36 36 H 1.07996 * 119.64017 * 179.72671 * 25 24 23 37 37 H 1.08005 * 120.80120 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1614 -2.4119 7 7 2.5967 -0.6534 -3.4575 8 6 2.7360 0.0774 -4.7196 9 1 3.0459 1.1019 -4.5140 10 6 3.7731 -0.5983 -5.5794 11 1 4.2147 -1.5308 -5.2605 12 6 4.1580 -0.0259 -6.7732 13 7 3.9583 1.2572 -6.9818 14 14 4.9561 -1.0743 -8.0972 15 1 5.2675 -0.2287 -9.2775 16 1 6.2105 -1.6684 -7.5691 17 1 4.0248 -2.1595 -8.4977 18 6 1.3936 0.0882 -5.4535 19 9 1.0526 -1.2178 -5.8215 20 9 0.4055 0.6082 -4.6106 21 9 1.4950 0.8842 -6.5995 22 6 2.0324 -0.7104 1.2304 23 6 2.0651 -2.0916 1.2764 24 7 2.5081 -2.7214 2.3467 25 6 2.9253 -2.0681 3.4134 26 6 2.9168 -0.6841 3.4435 27 9 3.3450 -0.0206 4.5396 28 6 2.4619 0.0129 2.3318 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 2.8280 -1.5944 -3.4138 34 1 3.4861 1.7881 -6.3216 35 1 1.7282 -2.6618 0.4233 36 1 3.2772 -2.6187 4.2732 37 1 2.4431 1.0928 2.3258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932898160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:01 Heat of formation + Delta-G solvation = -214.953994 kcal Electronic energy + Delta-G solvation = -29253.720366 eV Core-core repulsion = 24336.795388 eV Total energy + Delta-G solvation = -4916.924979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.76576 -50.05934 -48.29497 -48.24521 -41.68947 -40.77924 -37.48003 -36.42254 -34.66834 -33.62265 -32.21636 -30.71017 -29.49152 -26.48726 -25.69368 -24.94945 -23.96899 -22.58648 -21.76043 -20.30500 -19.47052 -19.09801 -18.92202 -18.67853 -18.28734 -18.07991 -17.83185 -16.90707 -16.81048 -16.06181 -15.95976 -15.67087 -15.40651 -15.19165 -15.06310 -14.88443 -14.78648 -14.73354 -14.57709 -14.51161 -14.45175 -14.30227 -14.21146 -13.92631 -13.48575 -13.25990 -12.99940 -12.88142 -12.54881 -12.48532 -11.91020 -11.42625 -11.36769 -10.95013 -10.72809 -10.47330 -10.42987 -10.04714 -9.93067 -8.82881 -6.59680 -0.24764 -0.07163 1.52813 1.60168 1.65396 1.85517 1.98777 2.29583 2.48539 2.51307 2.84314 2.93684 3.12409 3.25312 3.46596 3.48852 3.62396 3.67971 3.74405 3.79577 4.07494 4.10651 4.20830 4.56424 4.60944 4.69485 4.75773 4.81471 4.95610 5.21362 5.31632 5.34114 5.43211 5.48598 5.94350 6.08113 6.32743 6.67952 7.03465 7.19358 7.54028 8.52820 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.002928 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.650680 B = 9561.462915 C =10127.252925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.209 3.791 3 H 0.086 0.914 4 N -0.726 5.726 5 C 0.700 3.300 6 O -0.623 6.623 7 N -0.715 5.715 8 C 0.258 3.742 9 H 0.045 0.955 10 C -0.640 4.640 11 H 0.087 0.913 12 C -0.006 4.006 13 N -0.885 5.885 14 Si 1.115 2.885 15 H -0.287 1.287 16 H -0.260 1.260 17 H -0.268 1.268 18 C 0.414 3.586 19 F -0.188 7.188 20 F -0.203 7.203 21 F -0.191 7.191 22 C -0.110 4.110 23 C 0.097 3.903 24 N -0.468 5.468 25 C 0.075 3.925 26 C 0.046 3.954 27 F -0.131 7.131 28 C -0.097 4.097 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.410 0.590 33 H 0.412 0.588 34 H 0.263 0.737 35 H 0.179 0.821 36 H 0.191 0.809 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -8.158 18.192 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.103 3.897 3 H 0.104 0.896 4 N -0.384 5.384 5 C 0.400 3.600 6 O -0.503 6.503 7 N -0.368 5.368 8 C 0.150 3.850 9 H 0.063 0.937 10 C -0.676 4.676 11 H 0.105 0.895 12 C -0.212 4.212 13 N -0.516 5.516 14 Si 0.935 3.065 15 H -0.212 1.212 16 H -0.185 1.185 17 H -0.193 1.193 18 C 0.358 3.642 19 F -0.170 7.170 20 F -0.185 7.185 21 F -0.173 7.173 22 C -0.113 4.113 23 C -0.060 4.060 24 N -0.175 5.175 25 C -0.083 4.083 26 C 0.025 3.975 27 F -0.110 7.110 28 C -0.124 4.124 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.247 0.753 33 H 0.249 0.751 34 H 0.074 0.926 35 H 0.196 0.804 36 H 0.208 0.792 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.958 -7.889 16.715 18.718 hybrid contribution -0.908 0.760 1.444 1.867 sum -3.866 -7.129 18.159 19.887 Atomic orbital electron populations 1.22160 0.92999 1.03435 1.02701 1.19514 0.94804 0.95888 0.79446 0.89566 1.45008 1.71748 1.14082 1.07553 1.16145 0.77866 0.84857 0.81097 1.90893 1.58142 1.16161 1.85147 1.44833 1.69855 1.14535 1.07624 1.19197 0.87791 0.96143 0.81912 0.93742 1.21958 1.26160 1.12245 1.07251 0.89535 1.27381 0.96435 0.96479 1.00924 1.70868 1.34840 1.06053 1.39866 0.82970 0.76552 0.73886 0.73094 1.21225 1.18452 1.19346 1.23098 0.90119 0.72654 0.78322 1.93028 1.93641 1.37963 1.92334 1.93093 1.66750 1.87207 1.71452 1.93121 1.96277 1.74656 1.53237 1.20691 0.99946 0.95187 0.95431 1.22919 0.95142 0.91185 0.96761 1.67846 1.09513 1.40116 1.00056 1.23352 0.97036 0.89724 0.98221 1.18811 1.01840 0.92031 0.84867 1.91536 1.87409 1.80846 1.51219 1.21725 0.96485 1.02727 0.91469 0.93635 0.90681 0.89656 0.75302 0.75138 0.92601 0.80400 0.79198 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.46 71.98 0.68 -2.38 16 2 C 0.21 4.46 2.79 44.25 0.12 4.59 16 3 H 0.09 2.18 7.47 -2.39 -0.02 2.16 16 4 N -0.73 -17.95 5.03 -461.41 -2.32 -20.27 16 5 C 0.70 25.63 7.95 179.05 1.42 27.05 16 6 O -0.62 -28.26 14.62 -3.97 -0.06 -28.32 16 7 N -0.71 -27.29 5.03 -461.41 -2.32 -29.61 16 8 C 0.26 12.46 1.92 44.24 0.09 12.55 16 9 H 0.04 2.48 6.61 -2.39 -0.02 2.47 16 10 C -0.64 -31.82 8.21 25.60 0.21 -31.61 16 11 H 0.09 4.00 7.80 -2.91 -0.02 3.97 16 12 C -0.01 -0.31 4.72 84.66 0.40 0.09 16 13 N -0.89 -50.55 12.43 21.45 0.27 -50.28 16 14 Si 1.11 45.57 29.95 68.60 2.05 47.63 16 15 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 18 C 0.41 20.29 2.82 71.98 0.20 20.49 16 19 F -0.19 -8.67 16.87 44.97 0.76 -7.91 16 20 F -0.20 -9.78 15.54 44.97 0.70 -9.08 16 21 F -0.19 -10.23 14.13 44.97 0.64 -9.59 16 22 C -0.11 -1.86 4.96 -19.78 -0.10 -1.96 16 23 C 0.10 1.55 10.22 84.69 0.87 2.41 16 24 N -0.47 -8.18 10.36 -195.66 -2.03 -10.20 16 25 C 0.07 1.13 11.17 84.73 0.95 2.07 16 26 C 0.05 0.74 7.35 22.47 0.17 0.90 16 27 F -0.13 -2.23 17.28 44.97 0.78 -1.46 16 28 C -0.10 -1.57 9.81 22.51 0.22 -1.34 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.41 7.46 6.92 -92.71 -0.64 6.82 16 33 H 0.41 12.99 8.54 -92.71 -0.79 12.20 16 34 H 0.26 15.59 6.04 -92.71 -0.56 15.03 16 35 H 0.18 2.11 6.94 -2.91 -0.02 2.09 16 36 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -67.28 334.83 3.64 -63.64 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.05 Total: 22.60 kcal Atomic # 6 Polarization: 27.64 SS G_CDS: 5.23 Total: 32.87 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -6.40 Total: -110.37 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.06 Total: -28.32 kcal Atomic # 9 Polarization: -30.91 SS G_CDS: 2.87 Total: -28.04 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.05 Total: 47.63 kcal Total: -67.28 3.64 -63.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.312 kcal (2) G-P(sol) polarization free energy of solvation -67.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds