Wall clock time and date at job start Tue Mar 31 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46512 * 109.46906 * 163.15335 * 3 2 1 5 5 C 1.37095 * 119.99850 * 84.11813 * 4 3 2 6 6 H 1.07995 * 119.99909 * 168.38723 * 5 4 3 7 7 C 1.38949 * 120.00379 * 348.38000 * 5 4 3 8 8 N 1.31414 * 119.99798 * 0.35844 * 7 5 4 9 9 Si 1.86800 * 120.00301 * 180.35692 * 7 5 4 10 10 H 1.48500 * 109.46850 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47295 * 120.00047 * 9 7 5 12 12 H 1.48498 * 109.46679 * 240.00356 * 9 7 5 13 13 C 1.34774 * 119.99456 * 264.11733 * 4 3 2 14 14 O 1.21296 * 119.99262 * 184.91988 * 13 4 3 15 15 C 1.50698 * 120.00540 * 4.92006 * 13 4 3 16 16 H 1.08997 * 109.72379 * 16.49761 * 15 13 4 17 17 C 1.53075 * 109.69400 * 255.91574 * 15 13 4 18 18 C 1.50768 * 109.67584 * 192.08233 * 17 15 13 19 19 C 1.38504 * 118.76221 * 197.62531 * 18 17 15 20 20 C 1.38108 * 120.31834 * 180.44957 * 19 18 17 21 21 C 1.38290 * 119.98159 * 359.96283 * 20 19 18 22 22 C 1.37975 * 119.95784 * 359.91642 * 21 20 19 23 23 C 1.38375 * 121.40821 * 17.87178 * 18 17 15 24 24 O 1.35844 * 121.79866 * 359.44809 * 23 18 17 25 25 C 1.42829 * 117.86503 * 17.25757 * 24 23 18 26 26 H 1.09001 * 109.67725 * 70.53299 * 25 24 23 27 27 C 1.52997 * 109.68414 * 191.05163 * 25 24 23 28 28 F 1.39904 * 109.47084 * 65.66830 * 27 25 24 29 29 F 1.39901 * 109.47037 * 185.66768 * 27 25 24 30 30 H 4.40647 * 5.51469 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47955 * 43.15210 * 3 2 1 32 32 H 1.08998 * 109.47283 * 283.14865 * 3 2 1 33 33 H 0.97002 * 120.00133 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.43146 * 72.02458 * 17 15 13 35 35 H 1.08992 * 109.40394 * 312.12546 * 17 15 13 36 36 H 1.08003 * 119.84080 * 0.40090 * 19 18 17 37 37 H 1.08000 * 120.01089 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.02271 * 179.88466 * 21 20 19 39 39 H 1.07994 * 119.89201 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47421 * 305.66601 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3229 -0.4003 5 6 3.2470 2.3226 0.5310 6 1 3.7766 3.2313 0.2860 7 6 2.6803 2.1668 1.7900 8 7 2.0417 1.0582 2.0905 9 14 2.8261 3.5329 3.0556 10 1 3.5878 4.6672 2.4739 11 1 1.4693 3.9946 3.4442 12 1 3.5378 3.0227 4.2549 13 6 3.4710 1.5564 -1.6841 14 8 3.9583 2.6216 -1.9989 15 6 3.2426 0.4942 -2.7284 16 1 2.5502 -0.2554 -2.3454 17 6 4.5741 -0.1694 -3.0890 18 6 4.4024 -1.0119 -4.3275 19 6 5.3549 -1.9753 -4.6155 20 6 5.2343 -2.7586 -5.7465 21 6 4.1582 -2.5833 -6.5972 22 6 3.2049 -1.6268 -6.3141 23 6 3.3226 -0.8365 -5.1750 24 8 2.3622 0.0919 -4.9280 25 6 2.6634 1.1327 -3.9974 26 1 3.3949 1.8137 -4.4324 27 6 1.3861 1.9007 -3.6519 28 9 0.5052 1.0566 -2.9671 29 9 1.7052 2.9967 -2.8431 30 1 -1.0502 -0.0004 -0.0001 31 1 3.0098 -0.7488 -0.7028 32 1 3.0094 -0.2329 1.0007 33 1 1.6457 0.9495 2.9693 34 1 4.8997 -0.8014 -2.2628 35 1 5.3235 0.5998 -3.2746 36 1 6.1964 -2.1140 -3.9529 37 1 5.9802 -3.5081 -5.9665 38 1 4.0642 -3.1942 -7.4827 39 1 2.3647 -1.4910 -6.9789 40 1 0.9136 2.2516 -4.5694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935813193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:35 Heat of formation + Delta-G solvation = -63.578713 kcal Electronic energy + Delta-G solvation = -30365.330222 eV Core-core repulsion = 25976.906147 eV Total energy + Delta-G solvation = -4388.424075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.47481 -46.43688 -40.82990 -38.71432 -37.48843 -35.34189 -34.00652 -31.89158 -31.28534 -31.19849 -30.24983 -27.66016 -26.48434 -25.22562 -23.91711 -22.84816 -22.51166 -20.51820 -18.78965 -18.22289 -17.85894 -17.21829 -17.02072 -16.55030 -16.42386 -16.28269 -15.54089 -15.17497 -14.67464 -14.50799 -14.27121 -13.95968 -13.82217 -13.64652 -13.39948 -13.18382 -13.07956 -12.74460 -12.64614 -12.51008 -12.24807 -12.09741 -11.89374 -11.46217 -11.38120 -11.28160 -11.08708 -10.88660 -10.67863 -10.43804 -10.30434 -10.11016 -9.48851 -9.14909 -8.82138 -8.68220 -8.44180 -8.18702 -7.92695 -6.24579 -3.87420 1.27672 1.38184 2.87902 3.12396 3.25025 3.31292 3.59152 3.69343 3.89544 4.11828 4.18399 4.28934 4.40781 4.50941 4.67956 4.75028 4.93718 4.95669 5.07420 5.11970 5.19968 5.27201 5.36622 5.44930 5.51746 5.54323 5.62467 5.76859 5.88894 5.93385 6.02687 6.18504 6.23964 6.35213 6.44129 6.49064 6.72287 7.04097 7.21495 7.35784 7.54949 7.97653 8.41561 8.99775 9.10810 9.33649 9.84069 10.67098 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.004308 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.183377 B = 6498.656190 C = 6820.170335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.098 4.098 3 C 0.225 3.775 4 N -0.432 5.432 5 C -0.297 4.297 6 H 0.107 0.893 7 C 0.027 3.973 8 N -0.876 5.876 9 Si 0.931 3.069 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.456 3.544 14 O -0.575 6.575 15 C -0.140 4.140 16 H 0.104 0.896 17 C -0.065 4.065 18 C -0.148 4.148 19 C -0.083 4.083 20 C -0.153 4.153 21 C -0.093 4.093 22 C -0.147 4.147 23 C 0.135 3.865 24 O -0.306 6.306 25 C 0.064 3.936 26 H 0.109 0.891 27 C 0.274 3.726 28 F -0.190 7.190 29 F -0.167 7.167 30 H 0.195 0.805 31 H 0.050 0.950 32 H 0.134 0.866 33 H 0.267 0.733 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 -7.612 -12.909 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.100 4.100 3 C 0.103 3.897 4 N -0.150 5.150 5 C -0.424 4.424 6 H 0.125 0.875 7 C -0.174 4.174 8 N -0.517 5.517 9 Si 0.758 3.242 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.243 3.757 14 O -0.459 6.459 15 C -0.162 4.162 16 H 0.122 0.878 17 C -0.103 4.103 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.171 4.171 21 C -0.111 4.111 22 C -0.166 4.166 23 C 0.090 3.910 24 O -0.220 6.220 25 C 0.006 3.994 26 H 0.126 0.874 27 C 0.220 3.780 28 F -0.172 7.172 29 F -0.147 7.147 30 H 0.212 0.788 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.068 -7.097 -12.876 14.847 hybrid contribution -0.361 0.515 1.055 1.228 sum 1.706 -6.581 -11.821 13.637 Atomic orbital electron populations 1.24135 0.95263 1.02778 1.06809 1.22972 0.94119 0.97766 0.95130 1.18760 0.84710 0.83971 1.02287 1.43681 1.54732 1.10449 1.06092 1.19820 1.32970 0.97998 0.91632 0.87538 1.25307 0.95673 0.97905 0.98545 1.69943 1.35216 1.24602 1.21928 0.85768 0.78029 0.80623 0.79758 1.19286 1.20746 1.20732 1.19272 0.85846 0.87890 0.82674 1.90539 1.48857 1.26530 1.79985 1.21909 0.99169 0.99781 0.95297 0.87763 1.20439 0.96791 0.98279 0.94754 1.19942 0.96630 1.00620 0.97691 1.20919 0.97858 0.94267 0.97100 1.21003 0.99181 1.01101 0.95820 1.20878 0.93800 0.97109 0.99306 1.20554 1.01509 0.98415 0.96100 1.18667 0.88445 0.90257 0.93610 1.85858 1.39192 1.36828 1.60155 1.23290 0.97146 0.89011 0.89959 0.87353 1.21353 0.87470 0.79471 0.89710 1.93046 1.70031 1.71760 1.82327 1.93180 1.93172 1.52958 1.75440 0.78829 0.93206 0.84913 0.92132 0.89270 0.89224 0.85617 0.85955 0.85560 0.85263 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.01 19.25 29.55 0.57 -5.44 16 2 C -0.10 -2.30 11.05 -37.13 -0.41 -2.71 16 3 C 0.23 5.13 4.84 -6.83 -0.03 5.10 16 4 N -0.43 -10.79 2.60 -117.93 -0.31 -11.10 16 5 C -0.30 -8.06 9.49 -14.93 -0.14 -8.21 16 6 H 0.11 3.05 7.21 -52.49 -0.38 2.67 16 7 C 0.03 0.71 5.37 -17.47 -0.09 0.61 16 8 N -0.88 -22.57 8.07 55.50 0.45 -22.12 16 9 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.46 10.63 4.85 -10.99 -0.05 10.58 16 14 O -0.57 -14.95 14.65 5.54 0.08 -14.87 16 15 C -0.14 -2.62 1.36 -91.52 -0.12 -2.75 16 16 H 0.10 2.04 5.54 -51.93 -0.29 1.76 16 17 C -0.07 -1.03 5.18 -27.81 -0.14 -1.18 16 18 C -0.15 -2.11 5.75 -104.44 -0.60 -2.72 16 19 C -0.08 -0.99 9.67 -39.53 -0.38 -1.37 16 20 C -0.15 -1.58 10.04 -39.61 -0.40 -1.98 16 21 C -0.09 -0.95 10.04 -39.66 -0.40 -1.35 16 22 C -0.15 -1.79 9.94 -39.34 -0.39 -2.18 16 23 C 0.14 1.98 6.47 -39.20 -0.25 1.73 16 24 O -0.31 -4.84 9.92 -19.25 -0.19 -5.03 16 25 C 0.06 1.09 2.43 -26.52 -0.06 1.03 16 26 H 0.11 1.82 8.05 -51.93 -0.42 1.41 16 27 C 0.27 4.84 5.02 37.16 0.19 5.03 16 28 F -0.19 -3.74 16.68 2.25 0.04 -3.70 16 29 F -0.17 -3.63 14.10 2.25 0.03 -3.60 16 30 H 0.19 3.63 7.80 -54.08 -0.42 3.21 16 31 H 0.05 0.98 6.16 -51.93 -0.32 0.66 16 32 H 0.13 3.19 6.09 -51.93 -0.32 2.87 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 36 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 343.40 15.07 5.18 5.18 Total: -1.00 -31.20 343.40 -6.71 -37.91 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.23 Total: 7.37 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.73 Total: -5.81 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.14 Total: -33.22 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.11 Total: -19.90 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.07 Total: -7.31 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.20 -6.71 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935813193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.666 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds