Wall clock time and date at job start Tue Mar 31 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46512 * 109.46906 * 163.15335 * 3 2 1 5 5 C 1.37095 * 119.99850 * 84.11813 * 4 3 2 6 6 H 1.07995 * 119.99909 * 168.38723 * 5 4 3 7 7 C 1.38949 * 120.00379 * 348.38000 * 5 4 3 8 8 N 1.31414 * 119.99798 * 0.35844 * 7 5 4 9 9 Si 1.86800 * 120.00301 * 180.35692 * 7 5 4 10 10 H 1.48500 * 109.46850 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47295 * 120.00047 * 9 7 5 12 12 H 1.48498 * 109.46679 * 240.00356 * 9 7 5 13 13 C 1.34774 * 119.99456 * 264.11733 * 4 3 2 14 14 O 1.21296 * 119.99262 * 184.91988 * 13 4 3 15 15 C 1.50698 * 120.00540 * 4.92006 * 13 4 3 16 16 H 1.08997 * 109.72379 * 16.49761 * 15 13 4 17 17 C 1.53075 * 109.69400 * 255.91574 * 15 13 4 18 18 C 1.50768 * 109.67584 * 192.08233 * 17 15 13 19 19 C 1.38504 * 118.76221 * 197.62531 * 18 17 15 20 20 C 1.38108 * 120.31834 * 180.44957 * 19 18 17 21 21 C 1.38290 * 119.98159 * 359.96283 * 20 19 18 22 22 C 1.37975 * 119.95784 * 359.91642 * 21 20 19 23 23 C 1.38375 * 121.40821 * 17.87178 * 18 17 15 24 24 O 1.35844 * 121.79866 * 359.44809 * 23 18 17 25 25 C 1.42829 * 117.86503 * 17.25757 * 24 23 18 26 26 H 1.09001 * 109.67725 * 70.53299 * 25 24 23 27 27 C 1.52997 * 109.68414 * 191.05163 * 25 24 23 28 28 F 1.39904 * 109.47084 * 65.66830 * 27 25 24 29 29 F 1.39901 * 109.47037 * 185.66768 * 27 25 24 30 30 H 4.40647 * 5.51469 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47955 * 43.15210 * 3 2 1 32 32 H 1.08998 * 109.47283 * 283.14865 * 3 2 1 33 33 H 0.97002 * 120.00133 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.43146 * 72.02458 * 17 15 13 35 35 H 1.08992 * 109.40394 * 312.12546 * 17 15 13 36 36 H 1.08003 * 119.84080 * 0.40090 * 19 18 17 37 37 H 1.08000 * 120.01089 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.02271 * 179.88466 * 21 20 19 39 39 H 1.07994 * 119.89201 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47421 * 305.66601 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3229 -0.4003 5 6 3.2470 2.3226 0.5310 6 1 3.7766 3.2313 0.2860 7 6 2.6803 2.1668 1.7900 8 7 2.0417 1.0582 2.0905 9 14 2.8261 3.5329 3.0556 10 1 3.5878 4.6672 2.4739 11 1 1.4693 3.9946 3.4442 12 1 3.5378 3.0227 4.2549 13 6 3.4710 1.5564 -1.6841 14 8 3.9583 2.6216 -1.9989 15 6 3.2426 0.4942 -2.7284 16 1 2.5502 -0.2554 -2.3454 17 6 4.5741 -0.1694 -3.0890 18 6 4.4024 -1.0119 -4.3275 19 6 5.3549 -1.9753 -4.6155 20 6 5.2343 -2.7586 -5.7465 21 6 4.1582 -2.5833 -6.5972 22 6 3.2049 -1.6268 -6.3141 23 6 3.3226 -0.8365 -5.1750 24 8 2.3622 0.0919 -4.9280 25 6 2.6634 1.1327 -3.9974 26 1 3.3949 1.8137 -4.4324 27 6 1.3861 1.9007 -3.6519 28 9 0.5052 1.0566 -2.9671 29 9 1.7052 2.9967 -2.8431 30 1 -1.0502 -0.0004 -0.0001 31 1 3.0098 -0.7488 -0.7028 32 1 3.0094 -0.2329 1.0007 33 1 1.6457 0.9495 2.9693 34 1 4.8997 -0.8014 -2.2628 35 1 5.3235 0.5998 -3.2746 36 1 6.1964 -2.1140 -3.9529 37 1 5.9802 -3.5081 -5.9665 38 1 4.0642 -3.1942 -7.4827 39 1 2.3647 -1.4910 -6.9789 40 1 0.9136 2.2516 -4.5694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935813193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:34 Heat of formation + Delta-G solvation = -80.284201 kcal Electronic energy + Delta-G solvation = -30366.054627 eV Core-core repulsion = 25976.906147 eV Total energy + Delta-G solvation = -4389.148479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.99202 -47.98204 -42.04601 -40.38601 -38.56021 -37.21025 -35.38456 -33.75458 -33.05495 -32.45629 -31.26219 -28.97942 -28.25976 -26.86730 -25.43459 -24.16624 -23.47852 -21.86039 -20.36094 -19.77779 -19.38649 -18.71947 -18.41398 -18.15839 -18.03851 -17.78131 -16.92410 -16.32777 -16.19580 -16.00142 -15.75615 -15.46367 -15.24174 -14.98465 -14.81171 -14.57593 -14.36761 -14.31586 -14.19576 -14.17131 -13.74181 -13.64645 -13.17701 -13.14627 -12.90656 -12.54031 -12.51504 -12.42158 -12.18435 -12.04467 -11.85351 -11.49426 -11.35633 -10.97823 -10.52924 -10.32050 -9.87361 -9.74042 -9.19186 -8.20996 -5.92023 0.35808 0.45055 1.32998 1.40063 1.52571 1.65272 1.82867 2.09736 2.33385 2.48457 2.72042 2.79705 3.01734 3.09779 3.14146 3.22732 3.62962 3.69212 3.73264 3.85181 3.91441 3.95571 4.07679 4.12755 4.28633 4.32488 4.46993 4.58542 4.60603 4.64252 4.80016 4.84806 5.10090 5.19148 5.33106 5.45728 5.47434 5.52399 5.60529 5.81958 6.01204 6.28920 6.44588 7.13124 7.21015 7.41302 7.93650 8.67588 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.004308 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.183377 B = 6498.656190 C = 6820.170335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.131 4.131 3 C 0.231 3.769 4 N -0.447 5.447 5 C -0.331 4.331 6 H 0.079 0.921 7 C -0.002 4.002 8 N -0.882 5.882 9 Si 0.988 3.012 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.457 3.543 14 O -0.609 6.609 15 C -0.130 4.130 16 H 0.096 0.904 17 C -0.059 4.059 18 C -0.166 4.166 19 C -0.089 4.089 20 C -0.145 4.145 21 C -0.085 4.085 22 C -0.151 4.151 23 C 0.101 3.899 24 O -0.307 6.307 25 C 0.072 3.928 26 H 0.107 0.893 27 C 0.261 3.739 28 F -0.203 7.203 29 F -0.195 7.195 30 H 0.224 0.776 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.270 0.730 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -9.610 -14.486 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.164 5.164 5 C -0.459 4.459 6 H 0.097 0.903 7 C -0.202 4.202 8 N -0.521 5.521 9 Si 0.813 3.187 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.246 3.754 14 O -0.495 6.495 15 C -0.152 4.152 16 H 0.114 0.886 17 C -0.096 4.096 18 C -0.166 4.166 19 C -0.107 4.107 20 C -0.163 4.163 21 C -0.102 4.102 22 C -0.169 4.169 23 C 0.057 3.943 24 O -0.221 6.221 25 C 0.014 3.986 26 H 0.125 0.875 27 C 0.208 3.792 28 F -0.184 7.184 29 F -0.177 7.177 30 H 0.241 0.759 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.051 -9.138 -14.457 17.225 hybrid contribution -0.334 1.036 1.436 1.802 sum 1.717 -8.101 -13.021 15.432 Atomic orbital electron populations 1.24921 0.96211 1.01532 1.05558 1.23311 0.94808 0.98922 0.96280 1.18688 0.84808 0.83573 1.02095 1.43829 1.55265 1.10815 1.06497 1.19688 1.34732 0.98257 0.93212 0.90270 1.25943 0.95004 0.99850 0.99443 1.70075 1.34702 1.25184 1.22180 0.84934 0.77860 0.78020 0.77888 1.20092 1.20552 1.19141 1.19969 0.84101 0.88381 0.82968 1.90500 1.50039 1.28325 1.80659 1.21777 1.00734 0.98137 0.94572 0.88629 1.20354 0.94694 0.98294 0.96299 1.19867 0.97927 1.01675 0.97174 1.21176 0.97688 0.93716 0.98149 1.21433 0.99593 1.00665 0.94580 1.21344 0.92626 0.96180 1.00079 1.20863 1.02534 0.98234 0.95311 1.19062 0.88918 0.91110 0.95169 1.85846 1.39877 1.36861 1.59523 1.23072 0.96672 0.89435 0.89470 0.87519 1.21968 0.88023 0.78734 0.90480 1.93006 1.70414 1.72155 1.82853 1.93116 1.93486 1.54489 1.76575 0.75897 0.90677 0.86483 0.91947 0.88629 0.90284 0.84069 0.82714 0.82001 0.83832 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.53 19.25 74.32 1.43 -10.10 16 2 C -0.13 -6.21 11.05 31.12 0.34 -5.87 16 3 C 0.23 10.74 4.84 84.57 0.41 11.15 16 4 N -0.45 -23.16 2.60 -645.42 -1.68 -24.83 16 5 C -0.33 -18.77 9.49 84.04 0.80 -17.97 16 6 H 0.08 4.81 7.21 -2.91 -0.02 4.79 16 7 C 0.00 -0.08 5.37 84.93 0.46 0.38 16 8 N -0.88 -45.85 8.07 21.66 0.17 -45.68 16 9 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.46 22.17 4.85 87.66 0.42 22.60 16 14 O -0.61 -33.27 14.65 -3.08 -0.05 -33.32 16 15 C -0.13 -5.00 1.36 -11.38 -0.02 -5.02 16 16 H 0.10 3.82 5.54 -2.39 -0.01 3.80 16 17 C -0.06 -1.89 5.18 29.89 0.15 -1.73 16 18 C -0.17 -4.56 5.75 -19.75 -0.11 -4.67 16 19 C -0.09 -1.91 9.67 22.30 0.22 -1.69 16 20 C -0.14 -2.41 10.04 22.25 0.22 -2.18 16 21 C -0.08 -1.38 10.04 22.22 0.22 -1.16 16 22 C -0.15 -3.25 9.94 22.42 0.22 -3.03 16 23 C 0.10 2.84 6.47 22.52 0.15 2.99 16 24 O -0.31 -9.47 9.92 -91.80 -0.91 -10.39 16 25 C 0.07 2.48 2.43 30.73 0.07 2.56 16 26 H 0.11 3.69 8.05 -2.39 -0.02 3.67 16 27 C 0.26 9.26 5.02 71.98 0.36 9.62 16 28 F -0.20 -7.99 16.68 44.97 0.75 -7.24 16 29 F -0.20 -8.81 14.10 44.97 0.63 -8.18 16 30 H 0.22 7.97 7.80 -4.41 -0.03 7.94 16 31 H 0.08 3.02 6.16 -2.39 -0.01 3.01 16 32 H 0.12 5.79 6.09 -2.39 -0.01 5.77 16 33 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 34 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.16 4.03 8.14 -2.39 -0.02 4.01 16 Total: -1.00 -70.03 343.40 7.39 -62.64 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 1.08 Total: 25.82 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.36 Total: -4.13 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.50 Total: -70.51 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.96 Total: -43.70 kcal Atomic # 9 Polarization: -16.81 SS G_CDS: 1.38 Total: -15.42 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -70.03 7.39 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935813193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.642 kcal (2) G-P(sol) polarization free energy of solvation -70.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds