Wall clock time and date at job start Tue Mar 31 2020 19:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.37657 * 119.99999 * 179.97438 * 5 4 2 7 7 N 1.30853 * 124.95482 * 359.70306 * 6 5 4 8 8 C 1.36144 * 108.69233 * 179.83524 * 7 6 5 9 9 C 1.39550 * 133.67177 * 180.08763 * 8 7 6 10 10 C 1.37770 * 119.73351 * 180.35701 * 9 8 7 11 11 C 1.38640 * 120.38812 * 359.97438 * 10 9 8 12 12 C 1.38026 * 120.46518 * 0.02562 * 11 10 9 13 13 C 1.38543 * 119.89783 * 359.97438 * 12 11 10 14 14 O 1.34460 * 124.96051 * 179.97438 * 6 5 4 15 15 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 16 16 C 1.34777 * 120.00258 * 275.00436 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46946 * 90.00549 * 24 22 20 26 26 H 1.48504 * 109.46826 * 210.00017 * 24 22 20 27 27 H 1.48496 * 109.47486 * 329.99998 * 24 22 20 28 28 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 29 29 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 31 31 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 32 32 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 33 33 H 0.96998 * 120.00251 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.13459 * 0.33604 * 9 8 7 35 35 H 1.07999 * 119.80424 * 179.97438 * 10 9 8 36 36 H 1.08007 * 119.76725 * 180.02562 * 11 10 9 37 37 H 1.07994 * 120.05483 * 180.02562 * 12 11 10 38 38 H 0.96999 * 119.99694 * 94.99826 * 15 2 1 39 39 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 40 40 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 41 41 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1874 -1.4421 -2.2119 7 7 3.6363 -1.9704 -3.2747 8 6 4.6182 -2.4831 -4.0662 9 6 4.6182 -3.1462 -5.2941 10 6 5.8104 -3.5577 -5.8485 11 6 7.0085 -3.3161 -5.1940 12 6 7.0226 -2.6612 -3.9790 13 6 5.8327 -2.2407 -3.4074 14 8 5.5226 -1.5930 -2.2608 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6488 -0.7287 3.5878 19 16 2.7105 0.4346 4.9731 20 6 3.3121 -0.6309 6.2408 21 1 3.5201 -1.6677 6.0212 22 6 3.5178 -0.1380 7.5220 23 7 3.2629 1.1252 7.7900 24 14 4.1550 -1.2680 8.8662 25 1 5.6395 -1.2306 8.8817 26 1 3.6347 -0.8151 10.1813 27 1 3.6974 -2.6562 8.6042 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4628 -0.4315 34 1 3.6873 -3.3365 -5.8076 35 1 5.8117 -4.0713 -6.7985 36 1 7.9374 -3.6426 -5.6379 37 1 7.9597 -2.4762 -3.4752 38 1 2.2490 -1.6316 1.1527 39 1 1.9759 -1.5504 3.8327 40 1 3.6480 -1.1212 3.3986 41 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107627609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:31 Heat of formation + Delta-G solvation = 8.094720 kcal Electronic energy + Delta-G solvation = -24726.723353 eV Core-core repulsion = 20927.540409 eV Total energy + Delta-G solvation = -3799.182944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.35350 -39.69514 -38.34631 -37.24898 -35.06938 -34.05464 -32.46919 -31.63789 -30.91003 -29.28053 -28.66133 -26.57110 -25.52538 -23.42493 -22.88351 -22.06893 -21.59369 -20.46504 -18.90303 -17.90321 -17.80954 -17.18446 -16.88613 -16.59716 -16.45175 -15.41306 -15.08272 -14.91230 -14.84051 -14.43537 -14.30456 -13.98166 -13.76182 -13.34363 -13.22335 -12.99542 -12.75458 -12.62073 -12.50406 -12.14805 -11.93750 -11.83315 -11.72352 -11.27356 -11.09612 -11.06451 -10.79659 -10.54511 -10.16564 -9.86211 -9.51659 -9.14732 -9.08386 -9.05094 -8.29672 -8.04998 -6.55203 -6.25771 -3.96832 0.58837 0.96066 1.54734 2.32796 2.89380 2.94401 3.08821 3.19672 3.24822 3.28509 3.42308 3.60805 4.12396 4.16435 4.25634 4.37646 4.68570 4.78381 4.82380 4.93367 5.00536 5.05612 5.09346 5.09693 5.21194 5.26673 5.41949 5.48657 5.58122 5.69013 5.80519 5.81685 5.83000 6.01003 6.05112 6.06689 6.07523 6.25884 6.45566 6.57050 6.73345 7.53431 7.56148 7.63783 8.31138 8.47022 9.19770 10.81583 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002107 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.682410 B =13284.865978 C =14711.250462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.098 0.902 4 C 0.137 3.863 5 N -0.678 5.678 6 C 0.510 3.490 7 N -0.543 5.543 8 C 0.065 3.935 9 C -0.084 4.084 10 C -0.110 4.110 11 C -0.117 4.117 12 C -0.079 4.079 13 C -0.011 4.011 14 O -0.233 6.233 15 N -0.740 5.740 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.422 0.578 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -9.203 -26.918 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.116 0.884 4 C 0.014 3.986 5 N -0.324 5.324 6 C 0.207 3.793 7 N -0.285 5.285 8 C -0.047 4.047 9 C -0.104 4.104 10 C -0.129 4.129 11 C -0.136 4.136 12 C -0.098 4.098 13 C -0.062 4.062 14 O -0.125 6.125 15 N -0.395 5.395 16 C 0.320 3.680 17 O -0.386 6.386 18 C -0.306 4.306 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.260 0.740 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.018 -7.082 -26.828 27.765 hybrid contribution 1.803 -2.320 1.425 3.265 sum 2.820 -9.401 -25.403 27.233 Atomic orbital electron populations 1.22105 0.93559 1.02774 1.03469 1.21179 0.95320 0.98000 0.82937 0.88365 1.21849 0.75897 1.02268 0.98569 1.43421 1.06783 1.61993 1.20209 1.21545 0.77307 0.90903 0.89519 1.71069 1.29487 1.23690 1.04290 1.19697 0.88043 1.00345 0.96622 1.20217 0.99092 0.98473 0.92630 1.21003 0.91625 1.00083 1.00239 1.20892 0.98755 0.99792 0.94178 1.19852 0.94361 0.99780 0.95814 1.19995 0.97557 1.02179 0.86435 1.84420 1.24236 1.65019 1.38863 1.46184 1.69726 1.14126 1.09505 1.20351 0.76720 0.87220 0.83677 1.90715 1.47958 1.15697 1.84259 1.23548 1.03692 1.04974 0.98345 1.85391 1.86389 1.12692 0.98752 1.22858 1.51131 0.98120 0.96353 0.90926 1.24995 0.95052 0.95565 0.97966 1.70008 1.45383 1.13230 1.21610 0.86166 0.79012 0.80185 0.80128 1.20252 1.20722 1.19692 0.91297 0.92000 0.90783 0.90140 0.89351 0.73955 0.84938 0.84859 0.84544 0.85017 0.76622 0.89131 0.89236 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.13 1.25 2.73 -67.93 -0.19 1.06 16 3 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 4 C 0.14 1.09 5.49 -4.04 -0.02 1.07 16 5 N -0.68 -6.38 5.51 -62.42 -0.34 -6.72 16 6 C 0.51 6.00 8.96 -87.64 -0.79 5.21 16 7 N -0.54 -6.81 10.91 -12.13 -0.13 -6.94 16 8 C 0.07 0.78 7.23 -84.69 -0.61 0.16 16 9 C -0.08 -0.76 10.10 -39.26 -0.40 -1.16 16 10 C -0.11 -0.76 10.02 -39.60 -0.40 -1.15 16 11 C -0.12 -0.80 10.03 -39.51 -0.40 -1.19 16 12 C -0.08 -0.70 10.06 -39.55 -0.40 -1.10 16 13 C -0.01 -0.13 7.42 -38.70 -0.29 -0.42 16 14 O -0.23 -2.92 10.79 2.48 0.03 -2.89 16 15 N -0.74 -8.37 4.52 -53.81 -0.24 -8.62 16 16 C 0.53 8.99 7.81 -10.98 -0.09 8.90 16 17 O -0.51 -10.66 15.52 5.56 0.09 -10.58 16 18 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 24 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.42 3.87 8.26 -40.82 -0.34 3.54 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.40 3.67 8.60 -40.82 -0.35 3.31 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 40 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -35.21 372.18 -9.57 -44.78 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.28 Total: 3.23 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.79 Total: -5.18 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.01 Total: -47.39 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.11 Total: -13.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.21 -9.57 -44.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107627609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.872 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds