Wall clock time and date at job start Tue Mar 31 2020 19:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.37657 * 119.99999 * 179.97438 * 5 4 2 7 7 N 1.30853 * 124.95482 * 359.70306 * 6 5 4 8 8 C 1.36144 * 108.69233 * 179.83524 * 7 6 5 9 9 C 1.39550 * 133.67177 * 180.08763 * 8 7 6 10 10 C 1.37770 * 119.73351 * 180.35701 * 9 8 7 11 11 C 1.38640 * 120.38812 * 359.97438 * 10 9 8 12 12 C 1.38026 * 120.46518 * 0.02562 * 11 10 9 13 13 C 1.38543 * 119.89783 * 359.97438 * 12 11 10 14 14 O 1.34460 * 124.96051 * 179.97438 * 6 5 4 15 15 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 16 16 C 1.34777 * 120.00258 * 275.00436 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46946 * 90.00549 * 24 22 20 26 26 H 1.48504 * 109.46826 * 210.00017 * 24 22 20 27 27 H 1.48496 * 109.47486 * 329.99998 * 24 22 20 28 28 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 29 29 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 31 31 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 32 32 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 33 33 H 0.96998 * 120.00251 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.13459 * 0.33604 * 9 8 7 35 35 H 1.07999 * 119.80424 * 179.97438 * 10 9 8 36 36 H 1.08007 * 119.76725 * 180.02562 * 11 10 9 37 37 H 1.07994 * 120.05483 * 180.02562 * 12 11 10 38 38 H 0.96999 * 119.99694 * 94.99826 * 15 2 1 39 39 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 40 40 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 41 41 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1874 -1.4421 -2.2119 7 7 3.6363 -1.9704 -3.2747 8 6 4.6182 -2.4831 -4.0662 9 6 4.6182 -3.1462 -5.2941 10 6 5.8104 -3.5577 -5.8485 11 6 7.0085 -3.3161 -5.1940 12 6 7.0226 -2.6612 -3.9790 13 6 5.8327 -2.2407 -3.4074 14 8 5.5226 -1.5930 -2.2608 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6488 -0.7287 3.5878 19 16 2.7105 0.4346 4.9731 20 6 3.3121 -0.6309 6.2408 21 1 3.5201 -1.6677 6.0212 22 6 3.5178 -0.1380 7.5220 23 7 3.2629 1.1252 7.7900 24 14 4.1550 -1.2680 8.8662 25 1 5.6395 -1.2306 8.8817 26 1 3.6347 -0.8151 10.1813 27 1 3.6974 -2.6562 8.6042 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4628 -0.4315 34 1 3.6873 -3.3365 -5.8076 35 1 5.8117 -4.0713 -6.7985 36 1 7.9374 -3.6426 -5.6379 37 1 7.9597 -2.4762 -3.4752 38 1 2.2490 -1.6316 1.1527 39 1 1.9759 -1.5504 3.8327 40 1 3.6480 -1.1212 3.3986 41 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107627609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:31 Heat of formation + Delta-G solvation = -18.381043 kcal Electronic energy + Delta-G solvation = -24727.871429 eV Core-core repulsion = 20927.540409 eV Total energy + Delta-G solvation = -3800.331019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.12925 -40.91002 -39.03771 -38.18408 -35.99903 -34.90283 -34.59570 -32.76698 -31.55210 -30.17049 -29.84614 -27.67005 -27.29499 -24.15806 -23.57301 -22.98299 -22.43564 -21.63503 -19.95560 -19.51772 -18.55764 -18.08995 -17.87320 -17.58928 -17.44582 -16.89140 -16.45180 -16.21861 -16.02156 -15.64294 -14.97851 -14.93391 -14.72920 -14.61103 -14.39314 -14.06931 -13.96249 -13.45308 -13.31096 -13.17622 -13.02942 -12.96072 -12.90613 -12.64617 -12.57678 -12.38874 -12.08176 -11.73677 -11.33842 -11.15699 -11.00313 -10.80769 -10.28758 -10.23789 -9.71224 -8.78622 -8.67095 -8.36129 -6.13567 -0.09434 0.29040 0.79198 1.25540 1.40857 1.45463 1.54948 1.55969 1.58774 2.17919 2.26381 2.35345 2.76110 2.98054 3.29954 3.39520 3.50625 3.70361 3.94561 4.01925 4.15050 4.18849 4.23606 4.31172 4.38880 4.46090 4.50207 4.54275 4.60317 4.71983 4.80189 4.98336 5.06111 5.17974 5.29223 5.40058 5.40645 5.43142 5.47336 5.62223 5.86541 5.98914 6.18383 6.43310 6.83728 7.05525 7.20289 8.72840 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002107 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.682410 B =13284.865978 C =14711.250462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.083 0.917 4 C 0.148 3.852 5 N -0.673 5.673 6 C 0.498 3.502 7 N -0.558 5.558 8 C 0.033 3.967 9 C -0.096 4.096 10 C -0.101 4.101 11 C -0.106 4.106 12 C -0.092 4.092 13 C -0.041 4.041 14 O -0.249 6.249 15 N -0.713 5.713 16 C 0.540 3.460 17 O -0.558 6.558 18 C -0.133 4.133 19 S -0.147 6.147 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.422 0.578 34 H 0.143 0.857 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.145 0.855 38 H 0.415 0.585 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -12.005 -29.042 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.101 0.899 4 C 0.026 3.974 5 N -0.320 5.320 6 C 0.195 3.805 7 N -0.302 5.302 8 C -0.079 4.079 9 C -0.116 4.116 10 C -0.120 4.120 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.091 4.091 14 O -0.142 6.142 15 N -0.368 5.368 16 C 0.326 3.674 17 O -0.435 6.435 18 C -0.284 4.284 19 S 0.080 5.920 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.546 5.546 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.187 0.813 36 H 0.190 0.810 37 H 0.163 0.837 38 H 0.252 0.748 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.897 -9.932 -29.007 30.719 hybrid contribution 1.558 -1.519 1.846 2.854 sum 3.455 -11.451 -27.161 29.678 Atomic orbital electron populations 1.22065 0.92553 1.03713 1.03144 1.21255 0.95973 0.97232 0.82404 0.89901 1.21812 0.75152 1.02752 0.97677 1.43462 1.07101 1.61713 1.19747 1.21747 0.77313 0.91459 0.89964 1.70988 1.30188 1.24262 1.04735 1.20112 0.88075 1.01828 0.97867 1.20561 1.00688 0.98412 0.91963 1.21471 0.90696 0.98678 1.01110 1.21399 1.00306 0.97760 0.92968 1.20267 0.94083 1.00014 0.96733 1.20498 0.98675 1.03342 0.86566 1.84378 1.24632 1.65550 1.39638 1.45900 1.67901 1.14607 1.08399 1.19958 0.76544 0.86512 0.84408 1.90709 1.50276 1.17547 1.84992 1.23398 1.05489 1.03287 0.96223 1.85537 1.86731 1.17048 1.02693 1.23200 1.50936 0.98438 0.96901 0.90044 1.26108 0.95105 0.97198 1.00741 1.70170 1.46748 1.15423 1.22309 0.84978 0.78499 0.78223 0.76434 1.19360 1.20294 1.18282 0.89015 0.90409 0.93727 0.88966 0.88342 0.73983 0.83874 0.81319 0.80991 0.83684 0.74849 0.87370 0.87352 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 71.98 0.68 -1.91 16 2 C 0.14 2.46 2.73 44.99 0.12 2.58 16 3 H 0.08 1.84 7.58 -2.39 -0.02 1.82 16 4 C 0.15 2.15 5.49 86.38 0.47 2.62 16 5 N -0.67 -12.32 5.51 -462.03 -2.54 -14.87 16 6 C 0.50 11.73 8.96 179.31 1.61 13.33 16 7 N -0.56 -13.91 10.91 -306.51 -3.35 -17.26 16 8 C 0.03 0.77 7.23 39.29 0.28 1.05 16 9 C -0.10 -1.60 10.10 22.48 0.23 -1.37 16 10 C -0.10 -1.07 10.02 22.26 0.22 -0.84 16 11 C -0.11 -1.11 10.03 22.32 0.22 -0.89 16 12 C -0.09 -1.50 10.06 22.29 0.22 -1.28 16 13 C -0.04 -0.95 7.42 22.84 0.17 -0.78 16 14 O -0.25 -6.37 10.79 -14.03 -0.15 -6.52 16 15 N -0.71 -15.36 4.52 -442.54 -2.00 -17.36 16 16 C 0.54 18.15 7.81 87.66 0.68 18.84 16 17 O -0.56 -23.92 15.52 -3.03 -0.05 -23.96 16 18 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 19 S -0.15 -7.99 20.57 -56.49 -1.16 -9.16 16 20 C -0.55 -30.91 9.50 67.96 0.65 -30.27 16 21 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 24 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.42 7.63 8.26 -92.71 -0.77 6.86 16 34 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.41 6.74 8.60 -92.71 -0.80 5.95 16 39 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 41 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.54 372.18 -0.95 -81.48 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.48 Total: 19.71 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.47 Total: -2.26 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -7.60 Total: -104.74 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.20 Total: -30.49 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.16 kcal Total: -80.54 -0.95 -81.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107627609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.102 kcal (2) G-P(sol) polarization free energy of solvation -80.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds