Wall clock time and date at job start Tue Mar 31 2020 18:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47121 * 332.18482 * 3 2 1 5 5 C 1.37098 * 120.00227 * 263.92724 * 4 3 2 6 6 H 1.07996 * 119.99960 * 199.75392 * 5 4 3 7 7 C 1.38949 * 119.99725 * 19.76354 * 5 4 3 8 8 N 1.31411 * 120.00152 * 21.74222 * 7 5 4 9 9 Si 1.86800 * 119.99654 * 201.74380 * 7 5 4 10 10 H 1.48497 * 109.47288 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47314 * 119.99964 * 9 7 5 12 12 H 1.48504 * 109.47135 * 239.99682 * 9 7 5 13 13 C 1.34776 * 119.99722 * 83.93006 * 4 3 2 14 14 O 1.21288 * 120.00046 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99968 * 0.02562 * 13 4 3 16 16 C 1.50705 * 109.47006 * 180.02562 * 15 13 4 17 17 C 1.33319 * 122.71136 * 85.02293 * 16 15 13 18 18 S 1.76171 * 108.09691 * 179.97438 * 17 16 15 19 19 C 1.70972 * 90.35443 * 359.97438 * 18 17 16 20 20 N 1.38603 * 124.95062 * 179.97438 * 19 18 17 21 21 C 1.47016 * 111.00248 * 123.65302 * 20 19 18 22 22 C 1.53094 * 109.25816 * 177.60568 * 21 20 19 23 23 O 1.43018 * 109.25893 * 56.85366 * 22 21 20 24 24 C 1.43010 * 113.73598 * 301.32936 * 23 22 21 25 25 C 1.47020 * 110.99789 * 0.02562 * 20 19 18 26 26 N 1.29694 * 110.10057 * 359.97438 * 19 18 17 27 27 H 4.40639 * 5.51390 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46288 * 212.19071 * 3 2 1 29 29 H 1.08991 * 109.47281 * 92.19039 * 3 2 1 30 30 H 0.97010 * 119.99588 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47596 * 59.99709 * 15 13 4 32 32 H 1.09002 * 109.47186 * 299.99518 * 15 13 4 33 33 H 1.08000 * 125.95350 * 359.97438 * 17 16 15 34 34 H 1.08993 * 109.51050 * 297.54886 * 21 20 19 35 35 H 1.09004 * 109.50224 * 57.67642 * 21 20 19 36 36 H 1.09000 * 109.51208 * 296.91903 * 22 21 20 37 37 H 1.09001 * 109.54255 * 176.80513 * 22 21 20 38 38 H 1.08998 * 109.50866 * 298.72882 * 24 23 22 39 39 H 1.09009 * 109.54403 * 178.62535 * 24 23 22 40 40 H 1.08992 * 109.50646 * 302.32777 * 25 20 19 41 41 H 1.09005 * 109.50521 * 62.45904 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2208 0.6445 5 6 3.4818 -1.2044 1.9708 6 1 4.1254 -1.9742 2.3702 7 6 3.0053 -0.1973 2.8011 8 7 1.9239 0.4715 2.4689 9 14 3.9018 0.2059 4.3895 10 1 5.0813 -0.6849 4.5320 11 1 4.3505 1.6212 4.3592 12 1 2.9859 0.0016 5.5405 13 6 3.2437 -2.3606 -0.0664 14 8 3.6488 -3.3717 0.4670 15 6 2.8629 -2.3785 -1.5244 16 6 3.0750 -3.7624 -2.0821 17 6 2.1595 -4.7266 -1.9845 18 16 2.8021 -6.1719 -2.7602 19 6 4.2447 -5.3379 -3.1431 20 7 5.3233 -5.8862 -3.8192 21 6 5.6475 -5.1010 -5.0191 22 6 6.8780 -5.7052 -5.7007 23 8 6.6217 -7.0788 -6.0055 24 6 6.3032 -7.8730 -4.8597 25 6 5.0667 -7.2908 -4.1695 26 7 4.1826 -4.1174 -2.7088 27 1 -1.0498 -0.0004 0.0000 28 1 3.0088 0.8706 0.5475 29 1 3.0093 0.0401 -1.0268 30 1 1.5915 1.1748 3.0485 31 1 3.4826 -1.6674 -2.0706 32 1 1.8138 -2.1018 -1.6294 33 1 1.1924 -4.6373 -1.5123 34 1 4.8027 -5.1226 -5.7074 35 1 5.8588 -4.0705 -4.7335 36 1 7.7359 -5.6348 -5.0319 37 1 7.0887 -5.1612 -6.6215 38 1 7.1443 -7.8657 -4.1665 39 1 6.0975 -8.8971 -5.1715 40 1 4.8541 -7.8588 -3.2639 41 1 4.2126 -7.3474 -4.8444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155222518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:20 Heat of formation + Delta-G solvation = 56.474771 kcal Electronic energy + Delta-G solvation = -26068.547323 eV Core-core repulsion = 22271.462295 eV Total energy + Delta-G solvation = -3797.085028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47033 -39.41329 -38.26419 -36.11067 -35.07435 -32.25676 -31.68790 -31.27044 -31.02826 -28.25495 -27.40744 -26.37072 -24.62142 -24.60298 -23.19580 -21.04770 -19.89867 -18.96185 -18.12244 -17.78934 -16.70564 -16.59973 -16.44739 -16.13764 -15.60354 -15.43383 -15.27469 -14.91797 -14.62880 -14.26550 -14.19834 -13.58438 -13.50324 -13.01094 -12.84438 -12.62423 -12.39616 -12.15772 -11.93833 -11.80458 -11.61564 -11.53984 -11.12169 -11.01982 -10.95180 -10.46604 -10.39867 -10.28759 -9.90707 -9.38944 -9.36025 -9.24630 -9.02227 -8.91431 -8.42232 -7.99493 -7.83629 -6.31936 -3.85354 0.97419 1.35318 1.87088 2.95656 3.09884 3.14673 3.26921 3.34397 3.47730 3.68815 3.92277 4.03515 4.20562 4.38045 4.51629 4.61580 4.73304 4.79849 4.90043 5.01478 5.10691 5.13507 5.27946 5.36111 5.43611 5.45642 5.53810 5.55285 5.66298 5.83166 5.91311 6.04223 6.16652 6.31375 6.36835 6.64687 6.71015 6.72158 7.00790 7.57974 8.03397 8.07639 8.44026 8.79573 9.15181 9.36229 9.92148 10.68873 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.002761 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.537679 B =10139.402294 C =10576.057943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.114 4.114 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.314 4.314 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.460 3.540 14 O -0.573 6.573 15 C -0.064 4.064 16 C 0.129 3.871 17 C -0.250 4.250 18 S 0.074 5.926 19 C 0.224 3.776 20 N -0.440 5.440 21 C 0.026 3.974 22 C 0.063 3.937 23 O -0.384 6.384 24 C 0.069 3.931 25 C 0.006 3.994 26 N -0.478 5.478 27 H 0.199 0.801 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.267 0.733 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.175 0.825 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -9.635 -16.723 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.107 3.893 4 N -0.160 5.160 5 C -0.441 4.441 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.499 5.499 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.248 3.752 14 O -0.456 6.456 15 C -0.107 4.107 16 C -0.002 4.002 17 C -0.390 4.390 18 S 0.323 5.677 19 C -0.146 4.146 20 N -0.161 5.161 21 C -0.102 4.102 22 C -0.014 4.014 23 O -0.302 6.302 24 C -0.009 4.009 25 C -0.122 4.122 26 N -0.198 5.198 27 H 0.216 0.784 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.192 0.808 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.561 -10.721 -16.514 20.009 hybrid contribution -0.885 1.373 1.385 2.142 sum 2.676 -9.348 -15.130 17.985 Atomic orbital electron populations 1.24255 0.95346 1.02304 1.05915 1.23175 0.94347 0.98419 0.95627 1.18238 0.84295 0.91003 0.95720 1.43647 1.56392 1.06167 1.09788 1.19663 1.28124 1.12678 0.83619 0.87952 1.25280 0.95017 0.97705 0.99227 1.70096 1.17947 1.23229 1.38618 0.85995 0.79805 0.78335 0.81371 1.19222 1.20604 1.20941 1.19766 0.84366 0.83712 0.87404 1.90548 1.50333 1.32662 1.72062 1.20252 1.03295 0.91358 0.95831 1.19385 0.87383 0.97245 0.96218 1.26384 1.06589 0.93893 1.12090 1.83685 1.10307 1.18335 1.55323 1.24996 0.93423 0.93309 1.02865 1.58564 1.31157 1.03052 1.23331 1.22984 0.98887 0.99339 0.89005 1.22767 0.95960 0.81985 1.00709 1.88001 1.90085 1.20224 1.31876 1.22649 0.95309 0.94950 0.87960 1.23117 0.99791 0.87327 1.01967 1.66133 1.24291 1.14593 1.14735 0.78418 0.87511 0.91821 0.92256 0.88567 0.88336 0.80801 0.92642 0.87585 0.91589 0.87558 0.91546 0.87473 0.88259 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.23 19.25 29.55 0.57 -4.66 16 2 C -0.11 -2.49 10.75 -37.12 -0.40 -2.89 16 3 C 0.23 5.02 4.91 -6.83 -0.03 4.99 16 4 N -0.44 -11.13 2.60 -117.93 -0.31 -11.44 16 5 C -0.31 -8.68 9.28 -14.93 -0.14 -8.81 16 6 H 0.10 3.02 7.42 -52.49 -0.39 2.63 16 7 C 0.03 0.83 4.83 -17.47 -0.08 0.75 16 8 N -0.86 -22.52 9.59 55.50 0.53 -21.99 16 9 Si 0.92 20.58 29.60 -169.99 -5.03 15.54 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.46 11.32 7.56 -10.98 -0.08 11.24 16 14 O -0.57 -16.30 15.70 5.55 0.09 -16.21 16 15 C -0.06 -1.24 4.72 -29.03 -0.14 -1.37 16 16 C 0.13 2.43 5.23 -84.18 -0.44 1.99 16 17 C -0.25 -4.25 11.11 29.01 0.32 -3.93 16 18 S 0.07 1.03 21.18 -107.50 -2.28 -1.24 16 19 C 0.22 3.52 6.81 -87.68 -0.60 2.92 16 20 N -0.44 -5.68 4.79 -175.07 -0.84 -6.52 16 21 C 0.03 0.28 5.55 -3.71 -0.02 0.26 16 22 C 0.06 0.55 7.01 37.21 0.26 0.81 16 23 O -0.38 -3.70 10.83 -35.23 -0.38 -4.08 16 24 C 0.07 0.55 7.01 37.21 0.26 0.81 16 25 C 0.01 0.06 4.67 -3.71 -0.02 0.04 16 26 N -0.48 -8.87 10.27 -11.36 -0.12 -8.99 16 27 H 0.20 3.24 7.80 -54.10 -0.42 2.82 16 28 H 0.11 2.44 6.60 -51.93 -0.34 2.10 16 29 H 0.06 1.14 6.69 -51.93 -0.35 0.79 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.10 1.68 7.42 -51.93 -0.39 1.29 16 32 H 0.10 1.73 7.49 -51.93 -0.39 1.35 16 33 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 1.24 7.92 -51.93 -0.41 0.83 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.10 0.92 7.65 -51.93 -0.40 0.53 16 41 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -34.11 358.53 -8.63 -42.74 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.17 Total: 4.64 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.54 Total: 2.14 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.73 Total: -48.94 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.29 Total: -20.29 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.54 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.28 Total: -1.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.11 -8.63 -42.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155222518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.217 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds