Wall clock time and date at job start Tue Mar 31 2020 18:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47121 * 332.18482 * 3 2 1 5 5 C 1.37098 * 120.00227 * 263.92724 * 4 3 2 6 6 H 1.07996 * 119.99960 * 199.75392 * 5 4 3 7 7 C 1.38949 * 119.99725 * 19.76354 * 5 4 3 8 8 N 1.31411 * 120.00152 * 21.74222 * 7 5 4 9 9 Si 1.86800 * 119.99654 * 201.74380 * 7 5 4 10 10 H 1.48497 * 109.47288 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47314 * 119.99964 * 9 7 5 12 12 H 1.48504 * 109.47135 * 239.99682 * 9 7 5 13 13 C 1.34776 * 119.99722 * 83.93006 * 4 3 2 14 14 O 1.21288 * 120.00046 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99968 * 0.02562 * 13 4 3 16 16 C 1.50705 * 109.47006 * 180.02562 * 15 13 4 17 17 C 1.33319 * 122.71136 * 85.02293 * 16 15 13 18 18 S 1.76171 * 108.09691 * 179.97438 * 17 16 15 19 19 C 1.70972 * 90.35443 * 359.97438 * 18 17 16 20 20 N 1.38603 * 124.95062 * 179.97438 * 19 18 17 21 21 C 1.47016 * 111.00248 * 123.65302 * 20 19 18 22 22 C 1.53094 * 109.25816 * 177.60568 * 21 20 19 23 23 O 1.43018 * 109.25893 * 56.85366 * 22 21 20 24 24 C 1.43010 * 113.73598 * 301.32936 * 23 22 21 25 25 C 1.47020 * 110.99789 * 0.02562 * 20 19 18 26 26 N 1.29694 * 110.10057 * 359.97438 * 19 18 17 27 27 H 4.40639 * 5.51390 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46288 * 212.19071 * 3 2 1 29 29 H 1.08991 * 109.47281 * 92.19039 * 3 2 1 30 30 H 0.97010 * 119.99588 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47596 * 59.99709 * 15 13 4 32 32 H 1.09002 * 109.47186 * 299.99518 * 15 13 4 33 33 H 1.08000 * 125.95350 * 359.97438 * 17 16 15 34 34 H 1.08993 * 109.51050 * 297.54886 * 21 20 19 35 35 H 1.09004 * 109.50224 * 57.67642 * 21 20 19 36 36 H 1.09000 * 109.51208 * 296.91903 * 22 21 20 37 37 H 1.09001 * 109.54255 * 176.80513 * 22 21 20 38 38 H 1.08998 * 109.50866 * 298.72882 * 24 23 22 39 39 H 1.09009 * 109.54403 * 178.62535 * 24 23 22 40 40 H 1.08992 * 109.50646 * 302.32777 * 25 20 19 41 41 H 1.09005 * 109.50521 * 62.45904 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2208 0.6445 5 6 3.4818 -1.2044 1.9708 6 1 4.1254 -1.9742 2.3702 7 6 3.0053 -0.1973 2.8011 8 7 1.9239 0.4715 2.4689 9 14 3.9018 0.2059 4.3895 10 1 5.0813 -0.6849 4.5320 11 1 4.3505 1.6212 4.3592 12 1 2.9859 0.0016 5.5405 13 6 3.2437 -2.3606 -0.0664 14 8 3.6488 -3.3717 0.4670 15 6 2.8629 -2.3785 -1.5244 16 6 3.0750 -3.7624 -2.0821 17 6 2.1595 -4.7266 -1.9845 18 16 2.8021 -6.1719 -2.7602 19 6 4.2447 -5.3379 -3.1431 20 7 5.3233 -5.8862 -3.8192 21 6 5.6475 -5.1010 -5.0191 22 6 6.8780 -5.7052 -5.7007 23 8 6.6217 -7.0788 -6.0055 24 6 6.3032 -7.8730 -4.8597 25 6 5.0667 -7.2908 -4.1695 26 7 4.1826 -4.1174 -2.7088 27 1 -1.0498 -0.0004 0.0000 28 1 3.0088 0.8706 0.5475 29 1 3.0093 0.0401 -1.0268 30 1 1.5915 1.1748 3.0485 31 1 3.4826 -1.6674 -2.0706 32 1 1.8138 -2.1018 -1.6294 33 1 1.1924 -4.6373 -1.5123 34 1 4.8027 -5.1226 -5.7074 35 1 5.8588 -4.0705 -4.7335 36 1 7.7359 -5.6348 -5.0319 37 1 7.0887 -5.1612 -6.6215 38 1 7.1443 -7.8657 -4.1665 39 1 6.0975 -8.8971 -5.1715 40 1 4.8541 -7.8588 -3.2639 41 1 4.2126 -7.3474 -4.8444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155222518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:20 Heat of formation + Delta-G solvation = 33.196590 kcal Electronic energy + Delta-G solvation = -26069.556741 eV Core-core repulsion = 22271.462295 eV Total energy + Delta-G solvation = -3798.094445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54593 -40.71435 -39.80346 -37.19929 -36.82677 -34.12001 -33.01945 -32.57893 -32.32640 -29.56482 -28.47566 -28.12230 -26.43964 -25.38120 -24.42498 -21.91511 -21.40183 -20.34829 -19.70063 -19.18377 -18.42443 -18.03405 -17.70175 -17.17218 -16.70867 -16.41242 -16.29442 -16.14948 -16.03609 -15.88771 -15.70712 -14.92356 -14.78862 -14.44280 -14.20911 -14.11286 -13.87048 -13.52892 -13.49882 -13.12965 -12.80020 -12.72868 -12.57961 -12.46226 -12.26588 -12.12575 -11.80574 -11.38734 -11.17133 -11.07710 -10.82074 -10.65680 -10.52942 -10.40720 -10.07999 -9.81426 -9.16221 -8.31862 -5.93598 -0.24534 0.19041 0.63523 1.34014 1.41510 1.54010 1.69523 1.89995 2.06774 2.17028 2.33844 2.40512 2.83080 3.04059 3.25696 3.47886 3.69403 3.78449 3.88894 3.91840 4.07150 4.09667 4.13878 4.18895 4.29314 4.40623 4.48586 4.61439 4.66087 4.69998 4.74391 4.78887 4.87685 4.94680 5.00625 5.36880 5.44140 5.47268 5.53567 6.04513 6.06680 6.44924 6.80185 7.14813 7.17075 7.40858 7.98785 8.66454 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.002761 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.537679 B =10139.402294 C =10576.057943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.156 4.156 3 C 0.233 3.767 4 N -0.451 5.451 5 C -0.352 4.352 6 H 0.069 0.931 7 C 0.007 3.993 8 N -0.868 5.868 9 Si 0.980 3.020 10 H -0.278 1.278 11 H -0.263 1.263 12 H -0.280 1.280 13 C 0.450 3.550 14 O -0.623 6.623 15 C -0.049 4.049 16 C 0.105 3.895 17 C -0.274 4.274 18 S 0.141 5.859 19 C 0.216 3.784 20 N -0.452 5.452 21 C 0.027 3.973 22 C 0.068 3.932 23 O -0.392 6.392 24 C 0.070 3.930 25 C 0.002 3.998 26 N -0.516 5.516 27 H 0.233 0.767 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.272 0.728 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.181 0.819 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -10.076 -18.002 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.157 4.157 3 C 0.110 3.890 4 N -0.169 5.169 5 C -0.480 4.480 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.804 3.196 10 H -0.202 1.202 11 H -0.188 1.188 12 H -0.205 1.205 13 C 0.240 3.760 14 O -0.510 6.510 15 C -0.091 4.091 16 C -0.026 4.026 17 C -0.413 4.413 18 S 0.392 5.608 19 C -0.153 4.153 20 N -0.174 5.174 21 C -0.100 4.100 22 C -0.009 4.009 23 O -0.311 6.311 24 C -0.007 4.007 25 C -0.126 4.126 26 N -0.237 5.237 27 H 0.250 0.750 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.198 0.802 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.121 0.879 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.016 -11.145 -17.830 21.241 hybrid contribution -0.741 1.431 1.765 2.390 sum 2.275 -9.714 -16.065 18.910 Atomic orbital electron populations 1.25115 0.96281 1.00349 1.04116 1.23362 0.94870 1.00180 0.97301 1.18301 0.84838 0.88851 0.96983 1.43840 1.56212 1.07538 1.09295 1.19507 1.29554 1.13397 0.85520 0.91285 1.25920 0.95280 0.96768 1.01757 1.70175 1.17951 1.22858 1.39428 0.85092 0.78258 0.78512 0.77703 1.20248 1.18792 1.20544 1.20632 0.83159 0.82810 0.89432 1.90494 1.52434 1.34375 1.73652 1.20086 1.04278 0.92827 0.91957 1.19366 0.88350 0.97432 0.97483 1.26659 1.06927 0.95432 1.12326 1.83304 1.08152 1.15709 1.53641 1.25443 0.94570 0.93050 1.02285 1.58644 1.29938 1.04676 1.24174 1.23023 1.00049 0.98695 0.88270 1.22830 0.94616 0.81899 1.01558 1.87996 1.90008 1.20482 1.32604 1.22809 0.94380 0.95943 0.87566 1.23310 1.01181 0.85545 1.02531 1.66105 1.24763 1.16420 1.16368 0.75036 0.89167 0.88319 0.91790 0.87030 0.86743 0.80175 0.92218 0.88976 0.91751 0.85207 0.91572 0.84577 0.87898 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.23 19.25 74.32 1.43 -7.80 16 2 C -0.16 -6.68 10.75 31.12 0.33 -6.35 16 3 C 0.23 10.17 4.91 84.57 0.42 10.59 16 4 N -0.45 -23.42 2.60 -645.42 -1.68 -25.09 16 5 C -0.35 -20.25 9.28 84.04 0.78 -19.47 16 6 H 0.07 4.34 7.42 -2.91 -0.02 4.31 16 7 C 0.01 0.35 4.83 84.93 0.41 0.77 16 8 N -0.87 -45.17 9.59 21.66 0.21 -44.96 16 9 Si 0.98 42.60 29.60 68.60 2.03 44.63 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.45 22.92 7.56 87.66 0.66 23.58 16 14 O -0.62 -37.13 15.70 -3.05 -0.05 -37.18 16 15 C -0.05 -1.90 4.72 29.10 0.14 -1.77 16 16 C 0.10 4.01 5.23 41.40 0.22 4.23 16 17 C -0.27 -9.27 11.11 66.71 0.74 -8.53 16 18 S 0.14 3.79 21.18 -56.49 -1.20 2.59 16 19 C 0.22 6.69 6.81 179.32 1.22 7.91 16 20 N -0.45 -11.31 4.79 -707.78 -3.39 -14.70 16 21 C 0.03 0.56 5.55 86.31 0.48 1.04 16 22 C 0.07 1.07 7.01 72.01 0.50 1.57 16 23 O -0.39 -6.66 10.83 -148.98 -1.61 -8.27 16 24 C 0.07 0.96 7.01 72.02 0.50 1.46 16 25 C 0.00 0.03 4.67 86.31 0.40 0.43 16 26 N -0.52 -19.37 10.27 -189.86 -1.95 -21.32 16 27 H 0.23 6.86 7.80 -4.43 -0.03 6.82 16 28 H 0.09 4.19 6.60 -2.39 -0.02 4.17 16 29 H 0.10 3.50 6.69 -2.39 -0.02 3.48 16 30 H 0.27 13.36 8.31 -92.70 -0.77 12.59 16 31 H 0.11 3.89 7.42 -2.39 -0.02 3.87 16 32 H 0.11 4.00 7.49 -2.39 -0.02 3.98 16 33 H 0.18 5.63 8.06 -2.91 -0.02 5.60 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 2.16 7.92 -2.38 -0.02 2.14 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.14 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.10 1.71 7.65 -2.39 -0.02 1.70 16 41 H 0.07 1.16 7.88 -2.38 -0.02 1.15 16 Total: -1.00 -75.87 358.53 1.65 -74.22 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.05 Total: 22.40 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 8.24 Total: 7.68 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -6.81 Total: -106.07 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.66 Total: -45.45 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.20 Total: 2.59 kcal Total: -75.87 1.65 -74.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155222518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.415 kcal (2) G-P(sol) polarization free energy of solvation -75.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds