Wall clock time and date at job start Tue Mar 31 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46679 * 2 1 4 4 N 1.46499 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.46503 * 120.00445 * 275.00294 * 4 3 2 6 6 C 1.50698 * 109.46881 * 274.99862 * 5 4 3 7 7 H 1.07998 * 120.00428 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99949 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00294 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99837 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47292 * 89.99808 * 10 8 6 12 12 H 1.48497 * 109.47129 * 210.00095 * 10 8 6 13 13 H 1.48501 * 109.47218 * 329.99691 * 10 8 6 14 14 S 1.65608 * 119.99678 * 95.00055 * 4 3 2 15 15 O 1.42098 * 106.39833 * 156.46061 * 14 4 3 16 16 O 1.42096 * 106.40180 * 23.54211 * 14 4 3 17 17 C 1.76199 * 107.21903 * 270.00255 * 14 4 3 18 18 C 1.36094 * 120.14537 * 114.97762 * 17 14 4 19 19 C 1.39360 * 120.97099 * 180.02562 * 18 17 14 20 20 C 1.36095 * 120.97019 * 359.97438 * 19 18 17 21 21 C 1.40556 * 119.71191 * 0.02562 * 20 19 18 22 22 N 1.33752 * 121.10290 * 180.02562 * 21 20 19 23 23 C 1.31335 * 119.70670 * 179.68496 * 22 21 20 24 24 C 1.39678 * 120.71398 * 0.56760 * 23 22 21 25 25 N 1.31333 * 120.71375 * 359.42275 * 24 23 22 26 26 C 1.33762 * 119.70724 * 0.27765 * 25 24 23 27 27 H 1.09005 * 109.47419 * 299.99401 * 1 2 3 28 28 H 1.08997 * 109.47293 * 59.99808 * 1 2 3 29 29 H 1.09007 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47445 * 240.00188 * 2 1 3 31 31 H 1.09004 * 109.47404 * 119.99825 * 2 1 3 32 32 H 1.09000 * 109.47123 * 60.00331 * 3 2 1 33 33 H 1.08997 * 109.47415 * 300.00117 * 3 2 1 34 34 H 1.08997 * 109.46539 * 34.99704 * 5 4 3 35 35 H 1.09001 * 109.46949 * 154.99737 * 5 4 3 36 36 H 0.97002 * 119.99928 * 180.02562 * 9 8 6 37 37 H 1.08003 * 119.50963 * 359.97438 * 18 17 14 38 38 H 1.07998 * 119.51778 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.15002 * 179.97438 * 20 19 18 40 40 H 1.08008 * 119.64318 * 180.27169 * 23 22 21 41 41 H 1.08002 * 119.64726 * 179.70613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.2370 1.3323 1.2648 6 6 4.3806 2.6991 1.8831 7 1 3.9682 3.5636 1.3841 8 6 5.0384 2.8460 3.0858 9 7 5.1633 4.0387 3.6257 10 14 5.7523 1.3509 3.9486 11 1 7.1499 1.1373 3.4940 12 1 5.7379 1.5727 5.4168 13 1 4.9368 0.1539 3.6209 14 16 4.3334 1.5676 -1.4278 15 8 5.6162 2.0859 -1.1036 16 8 3.4521 2.1945 -2.3494 17 6 4.5945 -0.0697 -2.0242 18 6 4.0096 -0.4761 -3.1839 19 6 4.2039 -1.7672 -3.6711 20 6 4.9846 -2.6584 -3.0014 21 6 5.6055 -2.2754 -1.8000 22 7 6.3789 -3.1285 -1.1194 23 6 6.9508 -2.7397 -0.0029 24 6 6.7510 -1.4476 0.4887 25 7 5.9963 -0.5918 -0.1615 26 6 5.4074 -0.9619 -1.3041 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 3.6893 0.6811 1.9460 35 1 5.2253 0.9128 1.0768 36 1 5.6265 4.1420 4.4717 37 1 3.3849 0.2119 -3.7343 38 1 3.7287 -2.0648 -4.5942 39 1 5.1258 -3.6558 -3.3908 40 1 7.5786 -3.4280 0.5436 41 1 7.2260 -1.1476 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194961023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:38 Heat of formation + Delta-G solvation = 6.215895 kcal Electronic energy + Delta-G solvation = -28012.438796 eV Core-core repulsion = 24213.174380 eV Total energy + Delta-G solvation = -3799.264416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52708 -37.76524 -36.69390 -36.43198 -35.18829 -34.93569 -33.08148 -31.84076 -31.03047 -30.96417 -27.90840 -25.53244 -25.11261 -24.43200 -23.03746 -22.10471 -21.00684 -19.20104 -18.63925 -17.93638 -17.47451 -16.84687 -16.61309 -15.97969 -15.58227 -15.20930 -15.17591 -14.59532 -14.43431 -14.19435 -14.14951 -13.73367 -13.35663 -12.65679 -12.57993 -12.40851 -12.22638 -12.12677 -12.00498 -11.86014 -11.80347 -11.62193 -11.50693 -11.40069 -11.16850 -11.04996 -10.86100 -10.75710 -10.32675 -10.23019 -10.11732 -9.49876 -9.17282 -9.12165 -9.07510 -8.49569 -8.02997 -6.00736 -3.97240 -0.21627 0.38484 0.95932 1.57688 2.48902 3.28838 3.32709 3.34957 3.53372 3.80403 3.81708 3.98141 4.16582 4.24198 4.44011 4.45155 4.67642 4.80217 4.93729 5.07059 5.14142 5.22253 5.28998 5.32591 5.36872 5.43641 5.58360 5.67203 5.68606 5.84661 5.94046 5.96696 6.04141 6.15139 6.23513 6.40117 6.54788 6.61551 6.97647 7.07862 7.26375 7.50058 7.56583 7.69672 8.57728 9.04536 9.59247 11.13279 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.006422 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.181291 B = 4358.854906 C = 5511.734971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.118 3.882 4 N -0.966 5.966 5 C 0.216 3.784 6 C -0.523 4.523 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.868 3.132 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.265 1.265 14 S 2.690 3.310 15 O -0.921 6.921 16 O -0.975 6.975 17 C -0.646 4.646 18 C 0.012 3.988 19 C -0.127 4.127 20 C -0.034 4.034 21 C 0.058 3.942 22 N -0.421 5.421 23 C 0.071 3.929 24 C 0.098 3.902 25 N -0.415 5.415 26 C 0.155 3.845 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.065 0.935 36 H 0.263 0.737 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.179 0.821 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -16.450 -10.981 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C -0.008 4.008 4 N -0.805 5.805 5 C 0.093 3.907 6 C -0.563 4.563 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.695 3.305 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.190 1.190 14 S 2.775 3.225 15 O -0.911 6.911 16 O -0.965 6.965 17 C -0.728 4.728 18 C -0.009 4.009 19 C -0.148 4.148 20 C -0.054 4.054 21 C -0.067 4.067 22 N -0.135 5.135 23 C -0.104 4.104 24 C -0.077 4.077 25 N -0.129 5.129 26 C 0.030 3.970 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.172 0.828 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.196 0.804 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.663 -15.589 -11.400 19.495 hybrid contribution 0.506 -1.586 0.748 1.825 sum -2.157 -17.175 -10.653 20.325 Atomic orbital electron populations 1.21687 0.95414 1.01292 1.02161 1.22017 0.96008 0.98570 1.01929 1.21348 0.79539 0.95614 1.04322 1.57104 1.13681 1.88036 1.21645 1.19780 0.92669 0.98181 0.80066 1.21412 1.36194 0.93078 1.05594 0.90520 1.24815 0.95582 0.95581 0.96980 1.69897 1.43088 1.21876 1.18924 0.86969 0.80481 0.84091 0.78967 1.19628 1.21269 1.19008 1.02338 0.74070 0.73363 0.72775 1.93623 1.39635 1.75216 1.82664 1.93495 1.66778 1.72690 1.63575 1.31411 1.08460 1.27165 1.05811 1.21039 0.91906 0.96053 0.91873 1.21153 0.99282 0.93415 1.00940 1.21042 0.92789 1.00152 0.91384 1.19574 0.98539 0.91480 0.97071 1.68664 1.05051 1.33680 1.06133 1.24091 0.97267 0.96139 0.92883 1.24266 0.93232 0.90479 0.99720 1.68921 1.05522 1.33775 1.04663 1.18736 0.94385 0.92013 0.91877 0.92264 0.92558 0.93087 0.92950 0.91571 0.89016 0.90021 0.95731 0.91729 0.92706 0.82759 0.83801 0.83810 0.80440 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.15 -2.10 6.26 -26.73 -0.17 -2.27 16 3 C 0.12 2.06 5.68 -4.04 -0.02 2.03 16 4 N -0.97 -20.16 2.77 -115.66 -0.32 -20.48 16 5 C 0.22 5.15 3.97 -5.19 -0.02 5.13 16 6 C -0.52 -14.96 9.94 -34.44 -0.34 -15.30 16 7 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 10 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.27 -5.89 6.54 56.52 0.37 -5.53 16 14 S 2.69 55.16 5.25 -107.50 -0.56 54.60 16 15 O -0.92 -22.60 16.30 -57.17 -0.93 -23.53 16 16 O -0.98 -19.75 15.49 -57.17 -0.89 -20.64 16 17 C -0.65 -10.77 5.91 -39.48 -0.23 -11.00 16 18 C 0.01 0.16 9.48 -39.93 -0.38 -0.22 16 19 C -0.13 -1.26 9.95 -39.93 -0.40 -1.66 16 20 C -0.03 -0.38 9.99 -39.48 -0.39 -0.77 16 21 C 0.06 0.84 6.59 -84.80 -0.56 0.28 16 22 N -0.42 -5.60 10.46 -10.80 -0.11 -5.71 16 23 C 0.07 0.82 11.21 -17.23 -0.19 0.62 16 24 C 0.10 1.37 11.21 -17.23 -0.19 1.18 16 25 N -0.41 -7.54 6.51 -10.80 -0.07 -7.61 16 26 C 0.16 2.63 6.55 -84.80 -0.56 2.07 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.65 8.11 -51.93 -0.42 1.23 16 33 H 0.08 1.33 6.92 -51.93 -0.36 0.98 16 34 H 0.02 0.57 7.17 -51.93 -0.37 0.20 16 35 H 0.07 1.55 4.29 -51.93 -0.22 1.33 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.15 1.70 7.27 -52.48 -0.38 1.32 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -36.82 354.13 -9.78 -46.60 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.15 Total: 1.48 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -3.19 Total: -19.24 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.27 Total: -60.75 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.82 Total: -44.17 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 55.16 SS G_CDS: -0.56 Total: 54.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.82 -9.78 -46.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194961023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.817 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds