Wall clock time and date at job start Tue Mar 31 2020 18:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46679 * 2 1 4 4 N 1.46499 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.46503 * 120.00445 * 275.00294 * 4 3 2 6 6 C 1.50698 * 109.46881 * 274.99862 * 5 4 3 7 7 H 1.07998 * 120.00428 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99949 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00294 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99837 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47292 * 89.99808 * 10 8 6 12 12 H 1.48497 * 109.47129 * 210.00095 * 10 8 6 13 13 H 1.48501 * 109.47218 * 329.99691 * 10 8 6 14 14 S 1.65608 * 119.99678 * 95.00055 * 4 3 2 15 15 O 1.42098 * 106.39833 * 156.46061 * 14 4 3 16 16 O 1.42096 * 106.40180 * 23.54211 * 14 4 3 17 17 C 1.76199 * 107.21903 * 270.00255 * 14 4 3 18 18 C 1.36094 * 120.14537 * 114.97762 * 17 14 4 19 19 C 1.39360 * 120.97099 * 180.02562 * 18 17 14 20 20 C 1.36095 * 120.97019 * 359.97438 * 19 18 17 21 21 C 1.40556 * 119.71191 * 0.02562 * 20 19 18 22 22 N 1.33752 * 121.10290 * 180.02562 * 21 20 19 23 23 C 1.31335 * 119.70670 * 179.68496 * 22 21 20 24 24 C 1.39678 * 120.71398 * 0.56760 * 23 22 21 25 25 N 1.31333 * 120.71375 * 359.42275 * 24 23 22 26 26 C 1.33762 * 119.70724 * 0.27765 * 25 24 23 27 27 H 1.09005 * 109.47419 * 299.99401 * 1 2 3 28 28 H 1.08997 * 109.47293 * 59.99808 * 1 2 3 29 29 H 1.09007 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47445 * 240.00188 * 2 1 3 31 31 H 1.09004 * 109.47404 * 119.99825 * 2 1 3 32 32 H 1.09000 * 109.47123 * 60.00331 * 3 2 1 33 33 H 1.08997 * 109.47415 * 300.00117 * 3 2 1 34 34 H 1.08997 * 109.46539 * 34.99704 * 5 4 3 35 35 H 1.09001 * 109.46949 * 154.99737 * 5 4 3 36 36 H 0.97002 * 119.99928 * 180.02562 * 9 8 6 37 37 H 1.08003 * 119.50963 * 359.97438 * 18 17 14 38 38 H 1.07998 * 119.51778 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.15002 * 179.97438 * 20 19 18 40 40 H 1.08008 * 119.64318 * 180.27169 * 23 22 21 41 41 H 1.08002 * 119.64726 * 179.70613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.2370 1.3323 1.2648 6 6 4.3806 2.6991 1.8831 7 1 3.9682 3.5636 1.3841 8 6 5.0384 2.8460 3.0858 9 7 5.1633 4.0387 3.6257 10 14 5.7523 1.3509 3.9486 11 1 7.1499 1.1373 3.4940 12 1 5.7379 1.5727 5.4168 13 1 4.9368 0.1539 3.6209 14 16 4.3334 1.5676 -1.4278 15 8 5.6162 2.0859 -1.1036 16 8 3.4521 2.1945 -2.3494 17 6 4.5945 -0.0697 -2.0242 18 6 4.0096 -0.4761 -3.1839 19 6 4.2039 -1.7672 -3.6711 20 6 4.9846 -2.6584 -3.0014 21 6 5.6055 -2.2754 -1.8000 22 7 6.3789 -3.1285 -1.1194 23 6 6.9508 -2.7397 -0.0029 24 6 6.7510 -1.4476 0.4887 25 7 5.9963 -0.5918 -0.1615 26 6 5.4074 -0.9619 -1.3041 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 3.6893 0.6811 1.9460 35 1 5.2253 0.9128 1.0768 36 1 5.6265 4.1420 4.4717 37 1 3.3849 0.2119 -3.7343 38 1 3.7287 -2.0648 -4.5942 39 1 5.1258 -3.6558 -3.3908 40 1 7.5786 -3.4280 0.5436 41 1 7.2260 -1.1476 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194961023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:37 Heat of formation + Delta-G solvation = -21.694768 kcal Electronic energy + Delta-G solvation = -28013.649093 eV Core-core repulsion = 24213.174380 eV Total energy + Delta-G solvation = -3800.474713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51300 -38.77490 -38.24601 -37.99226 -36.86374 -35.97363 -34.91201 -33.52907 -31.99223 -31.94780 -29.77947 -26.58372 -26.48627 -25.40684 -24.12489 -23.96885 -22.30408 -20.23444 -19.77013 -19.38605 -18.93527 -18.76082 -17.99325 -17.26129 -17.15464 -16.33672 -16.10156 -16.07152 -15.74201 -15.51930 -15.24820 -15.06623 -14.64552 -14.53685 -13.95916 -13.62307 -13.47373 -13.27275 -13.21176 -13.19297 -13.10430 -12.96969 -12.90361 -12.86602 -12.78582 -12.40392 -12.30376 -12.24801 -11.94275 -11.90243 -11.63972 -11.50554 -10.72590 -10.17352 -10.12821 -10.08963 -9.71166 -8.24709 -6.28153 -1.20068 -0.56827 -0.55542 0.53016 1.34220 1.40906 1.49654 1.60019 2.04813 2.39244 2.71039 2.83761 2.92196 3.02463 3.10921 3.18192 3.38928 3.69855 3.81816 3.88163 4.00475 4.11587 4.20043 4.21604 4.28789 4.41167 4.45221 4.63270 4.75930 4.82385 4.86189 4.94765 4.97451 5.04284 5.11041 5.17311 5.24933 5.42224 5.46455 5.52212 5.59043 5.83504 6.11457 6.35585 6.57531 6.72268 7.33112 8.93178 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.006422 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.181291 B = 4358.854906 C = 5511.734971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.110 3.890 4 N -0.979 5.979 5 C 0.231 3.769 6 C -0.537 4.537 7 H 0.024 0.976 8 C 0.004 3.996 9 N -0.952 5.952 10 Si 0.940 3.060 11 H -0.254 1.254 12 H -0.282 1.282 13 H -0.235 1.235 14 S 2.692 3.308 15 O -0.979 6.979 16 O -0.988 6.988 17 C -0.668 4.668 18 C 0.024 3.976 19 C -0.114 4.114 20 C -0.022 4.022 21 C 0.045 3.955 22 N -0.425 5.425 23 C 0.085 3.915 24 C 0.089 3.911 25 N -0.472 5.472 26 C 0.130 3.870 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.266 0.734 37 H 0.169 0.831 38 H 0.196 0.804 39 H 0.181 0.819 40 H 0.227 0.773 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.077 -21.616 -12.412 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.015 4.015 4 N -0.816 5.816 5 C 0.107 3.893 6 C -0.576 4.576 7 H 0.043 0.957 8 C -0.192 4.192 9 N -0.593 5.593 10 Si 0.761 3.239 11 H -0.179 1.179 12 H -0.207 1.207 13 H -0.158 1.158 14 S 2.785 3.215 15 O -0.969 6.969 16 O -0.979 6.979 17 C -0.758 4.758 18 C 0.003 3.997 19 C -0.134 4.134 20 C -0.041 4.041 21 C -0.080 4.080 22 N -0.139 5.139 23 C -0.090 4.090 24 C -0.086 4.086 25 N -0.187 5.187 26 C 0.005 3.995 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.187 0.813 38 H 0.213 0.787 39 H 0.198 0.802 40 H 0.243 0.757 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.888 -20.695 -12.841 24.526 hybrid contribution 0.556 0.019 1.053 1.191 sum -2.333 -20.676 -11.788 23.915 Atomic orbital electron populations 1.21681 0.93052 1.02791 1.02634 1.21925 0.97897 0.95764 1.01965 1.21553 0.78002 0.98155 1.03775 1.57006 1.14866 1.88885 1.20850 1.19438 0.93605 0.95050 0.81234 1.21730 1.35897 0.94016 1.05948 0.95729 1.25914 0.95911 0.99569 0.97852 1.70085 1.44527 1.24956 1.19707 0.85836 0.80566 0.80182 0.77319 1.17882 1.20727 1.15770 1.01602 0.72788 0.74718 0.72441 1.93543 1.41938 1.77970 1.83498 1.93457 1.66609 1.74383 1.63404 1.30573 1.12325 1.24509 1.08363 1.21453 0.90340 0.97824 0.90120 1.21629 0.98387 0.91295 1.02130 1.21564 0.91063 1.01794 0.89688 1.19949 0.99161 0.90524 0.98364 1.68791 1.05212 1.33209 1.06697 1.24755 0.96390 0.95654 0.92205 1.24779 0.92454 0.91263 1.00071 1.68779 1.07658 1.35984 1.06291 1.18878 0.95151 0.93328 0.92151 0.92493 0.91510 0.90992 0.91884 0.92517 0.90737 0.89449 0.94775 0.91191 0.92523 0.81341 0.78687 0.80199 0.75716 0.78629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.91 71.98 0.71 -2.36 16 2 C -0.14 -3.82 6.26 30.60 0.19 -3.62 16 3 C 0.11 4.00 5.68 86.38 0.49 4.49 16 4 N -0.98 -42.74 2.77 -519.84 -1.44 -44.18 16 5 C 0.23 11.42 3.97 85.63 0.34 11.76 16 6 C -0.54 -32.64 9.94 25.60 0.25 -32.39 16 7 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 8 C 0.00 0.26 5.47 84.65 0.46 0.73 16 9 N -0.95 -61.82 13.96 21.45 0.30 -61.52 16 10 Si 0.94 43.40 27.47 68.60 1.88 45.28 16 11 H -0.25 -11.02 7.11 99.48 0.71 -10.32 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.23 -9.59 6.54 99.48 0.65 -8.94 16 14 S 2.69 115.45 5.25 -56.49 -0.30 115.15 16 15 O -0.98 -51.37 16.30 -128.00 -2.09 -53.46 16 16 O -0.99 -41.59 15.49 -128.00 -1.98 -43.57 16 17 C -0.67 -21.93 5.91 22.33 0.13 -21.79 16 18 C 0.02 0.55 9.48 22.04 0.21 0.76 16 19 C -0.11 -1.69 9.95 22.04 0.22 -1.47 16 20 C -0.02 -0.38 9.99 22.34 0.22 -0.16 16 21 C 0.04 1.15 6.59 40.29 0.27 1.41 16 22 N -0.43 -9.76 10.46 -188.08 -1.97 -11.73 16 23 C 0.09 1.66 11.21 85.12 0.95 2.61 16 24 C 0.09 2.34 11.21 85.12 0.95 3.29 16 25 N -0.47 -17.03 6.51 -188.09 -1.22 -18.25 16 26 C 0.13 4.27 6.55 40.29 0.26 4.53 16 27 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.07 2.87 8.11 -2.39 -0.02 2.86 16 33 H 0.09 2.99 6.92 -2.39 -0.02 2.97 16 34 H 0.03 1.60 7.17 -2.39 -0.02 1.58 16 35 H 0.07 3.45 4.29 -2.39 -0.01 3.43 16 36 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 37 H 0.17 3.29 7.27 -2.91 -0.02 3.27 16 38 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.23 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.20 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -88.88 354.13 -0.14 -89.02 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.00 Total: 15.48 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 5.67 Total: -32.22 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -4.33 Total: -135.69 kcal Atomic # 8 Polarization: -92.96 SS G_CDS: -4.07 Total: -97.03 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Atomic # 16 Polarization: 115.45 SS G_CDS: -0.30 Total: 115.15 kcal Total: -88.88 -0.14 -89.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194961023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.329 kcal (2) G-P(sol) polarization free energy of solvation -88.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds