Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46852 * 2 1 4 4 N 1.46497 * 109.47019 * 180.02562 * 3 2 1 5 5 C 1.46507 * 119.99526 * 274.99673 * 4 3 2 6 6 C 1.50698 * 109.47267 * 275.00220 * 5 4 3 7 7 H 1.07994 * 119.99727 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99915 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00060 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99836 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47215 * 59.99786 * 10 8 6 12 12 H 1.48500 * 109.47293 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47065 * 299.99926 * 10 8 6 14 14 S 1.65597 * 120.00450 * 95.00164 * 4 3 2 15 15 O 1.42096 * 106.40403 * 156.45829 * 14 4 3 16 16 O 1.42097 * 106.40239 * 23.53671 * 14 4 3 17 17 C 1.76203 * 107.21451 * 269.99800 * 14 4 3 18 18 C 1.39411 * 119.51562 * 270.26595 * 17 14 4 19 19 C 1.36065 * 120.96974 * 180.29211 * 18 17 14 20 20 C 1.40592 * 119.71685 * 359.44041 * 19 18 17 21 21 N 1.33748 * 121.11404 * 180.29921 * 20 19 18 22 22 C 1.31337 * 119.70759 * 179.97438 * 21 20 19 23 23 C 1.39677 * 120.71492 * 0.02562 * 22 21 20 24 24 N 1.31331 * 120.70632 * 0.02562 * 23 22 21 25 25 C 1.33753 * 119.70846 * 359.97438 * 24 23 22 26 26 C 1.36068 * 119.51657 * 89.99920 * 17 14 4 27 27 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46852 * 299.99421 * 1 2 3 29 29 H 1.08997 * 109.47371 * 60.00139 * 1 2 3 30 30 H 1.09001 * 109.46852 * 240.00579 * 2 1 3 31 31 H 1.08997 * 109.47371 * 119.99861 * 2 1 3 32 32 H 1.08998 * 109.47364 * 60.00020 * 3 2 1 33 33 H 1.08997 * 109.47019 * 300.00077 * 3 2 1 34 34 H 1.09002 * 109.47035 * 35.00426 * 5 4 3 35 35 H 1.09004 * 109.46878 * 154.99934 * 5 4 3 36 36 H 0.97001 * 120.00000 * 180.02562 * 9 8 6 37 37 H 1.07995 * 119.51752 * 0.02562 * 18 17 14 38 38 H 1.08002 * 120.14573 * 179.72372 * 19 18 17 39 39 H 1.08000 * 119.63896 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.64733 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.14208 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2379 1.3320 1.2631 6 6 4.3820 2.6986 1.8816 7 1 3.9693 3.5631 1.3831 8 6 5.0416 2.8452 3.0835 9 7 5.5446 1.7925 3.6902 10 14 5.2208 4.5393 3.8498 11 1 3.8747 5.1111 4.1072 12 1 5.9636 4.4272 5.1308 13 1 5.9660 5.4265 2.9209 14 16 4.3324 1.5679 -1.4295 15 8 5.6154 2.0861 -1.1062 16 8 3.4504 2.1951 -2.3503 17 6 4.5930 -0.0693 -2.0265 18 6 5.7428 -0.7625 -1.6507 19 6 5.9767 -2.0257 -2.0990 20 6 5.0423 -2.6495 -2.9442 21 7 5.2411 -3.8924 -3.3964 22 6 4.3498 -4.4488 -4.1843 23 6 3.1953 -3.7562 -4.5565 24 7 2.9782 -2.5345 -4.1263 25 6 3.8710 -1.9461 -3.3228 26 6 3.6665 -0.6406 -2.8430 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.6908 0.6805 1.9446 35 1 5.2261 0.9125 1.0743 36 1 6.0083 1.8957 4.5359 37 1 6.4605 -0.2883 -0.9978 38 1 6.8740 -2.5488 -1.8030 39 1 4.5116 -5.4523 -4.5491 40 1 2.4739 -4.2301 -5.2055 41 1 2.7787 -0.0929 -3.1225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198134093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = -29.455117 kcal Electronic energy + Delta-G solvation = -27009.039804 eV Core-core repulsion = 23208.228576 eV Total energy + Delta-G solvation = -3800.811227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55015 -38.75812 -38.44762 -37.96873 -36.95248 -35.98584 -34.98785 -33.42617 -32.17148 -31.90483 -29.25199 -26.77331 -26.51045 -25.57580 -24.39831 -23.64868 -22.39927 -20.91802 -19.59495 -19.44775 -18.51047 -18.41167 -18.21011 -17.42162 -17.16813 -16.37236 -16.27318 -15.86541 -15.75477 -15.44339 -15.25999 -15.01823 -14.83643 -14.25414 -14.09608 -13.88915 -13.50687 -13.33840 -13.27140 -13.14593 -13.04425 -12.98937 -12.94367 -12.84106 -12.81730 -12.50586 -12.41230 -12.22792 -12.12833 -11.98814 -11.67984 -11.47521 -10.57042 -10.40706 -10.27092 -9.93053 -9.80156 -8.18059 -6.29333 -1.20035 -0.76331 -0.63518 0.62833 1.35672 1.42022 1.45132 1.52073 2.04306 2.43118 2.63978 2.79446 2.85667 2.93512 3.05458 3.13668 3.33977 3.64471 3.73237 3.89682 3.90269 4.03654 4.14328 4.28328 4.33912 4.40089 4.45563 4.56542 4.70609 4.78271 4.82811 4.89321 5.00712 5.06795 5.15824 5.23992 5.26449 5.40638 5.43198 5.50847 5.71606 5.89608 6.08248 6.11682 6.55191 6.78167 7.39201 8.89450 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.003849 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.638731 B = 7272.087344 C = 7820.237074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.112 3.888 4 N -0.983 5.983 5 C 0.271 3.729 6 C -0.548 4.548 7 H 0.055 0.945 8 C 0.016 3.984 9 N -0.923 5.923 10 Si 0.953 3.047 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.277 1.277 14 S 2.691 3.309 15 O -0.976 6.976 16 O -0.979 6.979 17 C -0.656 4.656 18 C -0.038 4.038 19 C -0.095 4.095 20 C 0.098 3.902 21 N -0.456 5.456 22 C 0.111 3.889 23 C 0.086 3.914 24 N -0.437 5.437 25 C 0.035 3.965 26 C 0.034 3.966 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.022 0.978 36 H 0.267 0.733 37 H 0.148 0.852 38 H 0.166 0.834 39 H 0.230 0.770 40 H 0.229 0.771 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 -14.637 -15.137 22.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C -0.013 4.013 4 N -0.821 5.821 5 C 0.148 3.852 6 C -0.588 4.588 7 H 0.073 0.927 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.778 3.222 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.202 1.202 14 S 2.782 3.218 15 O -0.966 6.966 16 O -0.969 6.969 17 C -0.745 4.745 18 C -0.059 4.059 19 C -0.115 4.115 20 C -0.025 4.025 21 N -0.170 5.170 22 C -0.066 4.066 23 C -0.092 4.092 24 N -0.151 5.151 25 C -0.088 4.088 26 C 0.013 3.987 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.166 0.834 38 H 0.183 0.817 39 H 0.246 0.754 40 H 0.245 0.755 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.785 -13.685 -15.200 21.549 hybrid contribution 0.496 0.233 0.787 0.959 sum -6.289 -13.452 -14.413 20.694 Atomic orbital electron populations 1.21670 0.93125 1.02576 1.02761 1.21986 0.97970 0.96393 1.01827 1.21572 0.77659 0.97768 1.04295 1.57289 1.15263 1.88657 1.20920 1.18694 0.90514 0.96197 0.79820 1.21787 1.36284 0.94644 1.06059 0.92656 1.25685 0.94792 1.00562 0.97373 1.69995 1.37776 1.30827 1.17665 0.85679 0.78779 0.80058 0.77650 1.18898 1.20317 1.20208 1.01792 0.72934 0.74446 0.72596 1.93559 1.41781 1.77483 1.83819 1.93487 1.66312 1.73928 1.63195 1.30890 1.04153 1.26697 1.12737 1.20743 0.94495 0.94365 0.96262 1.21042 0.99787 0.94263 0.96397 1.19802 0.94103 0.91987 0.96569 1.68857 1.30440 1.08027 1.09672 1.25179 0.88974 1.02587 0.89810 1.25075 0.98014 0.89548 0.96539 1.68722 1.27583 1.11828 1.06977 1.19555 0.93732 0.96148 0.99354 1.20751 0.96716 0.92091 0.89102 0.91578 0.92045 0.91489 0.92533 0.92378 0.89768 0.89018 0.95143 0.96026 0.92402 0.83447 0.81658 0.75362 0.75467 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.91 71.98 0.71 -2.46 16 2 C -0.14 -4.09 6.26 30.60 0.19 -3.90 16 3 C 0.11 3.84 5.68 86.38 0.49 4.33 16 4 N -0.98 -40.71 2.77 -519.83 -1.44 -42.15 16 5 C 0.27 13.55 5.10 85.63 0.44 13.99 16 6 C -0.55 -30.61 9.38 25.60 0.24 -30.37 16 7 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.02 0.87 5.46 84.66 0.46 1.34 16 9 N -0.92 -53.52 13.29 21.45 0.28 -53.24 16 10 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 S 2.69 108.97 5.63 -56.49 -0.32 108.65 16 15 O -0.98 -46.93 16.21 -128.00 -2.08 -49.00 16 16 O -0.98 -39.78 15.76 -128.00 -2.02 -41.80 16 17 C -0.66 -22.24 5.94 22.05 0.13 -22.10 16 18 C -0.04 -1.22 9.42 22.05 0.21 -1.01 16 19 C -0.10 -2.65 9.99 22.34 0.22 -2.43 16 20 C 0.10 2.64 6.59 40.30 0.27 2.91 16 21 N -0.46 -9.93 10.46 -188.08 -1.97 -11.90 16 22 C 0.11 1.35 11.21 85.11 0.95 2.31 16 23 C 0.09 1.07 11.21 85.12 0.95 2.02 16 24 N -0.44 -9.84 10.46 -188.09 -1.97 -11.81 16 25 C 0.03 0.96 6.59 40.30 0.27 1.23 16 26 C 0.03 1.04 8.31 22.34 0.19 1.22 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.56 6.98 -2.39 -0.02 1.54 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 2.96 8.11 -2.39 -0.02 2.94 16 33 H 0.09 2.90 6.91 -2.39 -0.02 2.88 16 34 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 35 H 0.02 1.15 7.61 -2.39 -0.02 1.14 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.15 4.84 7.57 -2.91 -0.02 4.82 16 38 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.23 0.27 8.06 -2.91 -0.02 0.24 16 40 H 0.23 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.16 4.52 7.54 -2.91 -0.02 4.50 16 Total: -1.00 -75.73 362.19 -0.71 -76.44 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.05 Total: 11.48 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 5.72 Total: -32.93 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -5.09 Total: -119.09 kcal Atomic # 8 Polarization: -86.71 SS G_CDS: -4.09 Total: -90.80 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 108.97 SS G_CDS: -0.32 Total: 108.65 kcal Total: -75.73 -0.71 -76.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198134093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.983 kcal (2) G-P(sol) polarization free energy of solvation -75.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds