Wall clock time and date at job start Tue Mar 31 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47284 * 2 1 4 4 C 1.53000 * 109.47284 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47162 * 180.02562 * 4 3 2 6 6 C 1.36952 * 120.00435 * 264.29412 * 5 4 3 7 7 H 1.08008 * 120.00505 * 135.47752 * 6 5 4 8 8 C 1.38968 * 120.00090 * 315.48321 * 6 5 4 9 9 N 1.31428 * 119.99305 * 2.72877 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 182.73040 * 8 6 5 11 11 H 1.48502 * 109.47000 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.46981 * 119.99648 * 10 8 6 13 13 H 1.48504 * 109.46936 * 239.99993 * 10 8 6 14 14 C 1.34783 * 119.99858 * 84.29276 * 5 4 3 15 15 O 1.21724 * 119.99789 * 4.52573 * 14 5 4 16 16 C 1.46657 * 119.99751 * 184.51705 * 14 5 4 17 17 C 1.40030 * 120.86418 * 75.93426 * 16 14 5 18 18 N 1.31612 * 119.27870 * 180.02562 * 17 16 14 19 19 C 1.33680 * 122.39170 * 0.02562 * 18 17 16 20 20 S 1.71457 * 128.64989 * 179.97438 * 19 18 17 21 21 C 1.75595 * 91.30679 * 179.97438 * 20 19 18 22 22 C 1.50695 * 125.25481 * 180.02562 * 21 20 19 23 23 C 1.31043 * 109.49262 * 359.97438 * 21 20 19 24 24 N 1.35125 * 121.40614 * 359.97438 * 19 18 17 25 25 C 1.36390 * 119.27227 * 0.02562 * 24 19 18 26 26 O 1.21870 * 120.30822 * 179.71979 * 25 24 19 27 27 H 1.08998 * 109.47416 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47114 * 299.99923 * 1 2 3 29 29 H 1.09001 * 109.47143 * 59.99641 * 1 2 3 30 30 H 1.09011 * 109.46951 * 240.00318 * 2 1 3 31 31 H 1.08993 * 109.47283 * 120.00674 * 2 1 3 32 32 H 1.09002 * 109.46983 * 59.99996 * 3 2 1 33 33 H 1.09001 * 109.47324 * 300.00248 * 3 2 1 34 34 H 1.08995 * 109.46972 * 60.00742 * 4 3 2 35 35 H 1.09001 * 109.47143 * 300.00359 * 4 3 2 36 36 H 0.97007 * 119.99077 * 180.02562 * 9 8 6 37 37 H 1.07993 * 120.35808 * 359.97438 * 17 16 14 38 38 H 1.09004 * 109.46815 * 359.97438 * 22 21 20 39 39 H 1.08997 * 109.47317 * 119.97058 * 22 21 20 40 40 H 1.08997 * 109.47285 * 239.97121 * 22 21 20 41 41 H 1.07999 * 122.30927 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3983 3.4304 -1.1785 7 1 4.0783 4.4426 -1.3772 8 6 5.1550 2.7436 -2.1203 9 7 5.4989 1.4940 -1.9021 10 14 5.6834 3.5964 -3.6960 11 1 5.1712 4.9903 -3.7001 12 1 7.1660 3.6132 -3.7765 13 1 5.1324 2.8636 -4.8642 14 6 4.1731 3.4973 1.1630 15 8 3.9500 2.9331 2.2183 16 6 4.5668 4.9100 1.1556 17 6 3.6550 5.9080 0.7901 18 7 4.0418 7.1660 0.7939 19 6 5.2810 7.5331 1.1351 20 16 5.9525 9.1096 1.1956 21 6 7.5020 8.4730 1.7220 22 6 8.7266 9.2996 2.0183 23 6 7.4287 7.1682 1.8184 24 7 6.2106 6.6220 1.4981 25 6 5.8769 5.2997 1.5161 26 8 6.7019 4.4615 1.8356 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 6.0275 1.0147 -2.5594 37 1 2.6456 5.6481 0.5073 38 1 8.5018 10.3536 1.8549 39 1 9.0248 9.1484 3.0557 40 1 9.5391 8.9949 1.3587 41 1 8.2688 6.5641 2.1278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201217515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:16 Heat of formation + Delta-G solvation = 1.403646 kcal Electronic energy + Delta-G solvation = -26880.883978 eV Core-core repulsion = 23081.410887 eV Total energy + Delta-G solvation = -3799.473091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.15426 -38.77305 -37.38778 -36.98505 -35.19949 -33.90252 -33.10783 -31.48277 -30.69555 -28.39814 -27.81023 -26.26008 -24.85745 -23.42558 -23.00211 -21.36776 -20.35901 -19.35995 -18.95496 -18.37768 -17.78332 -16.66901 -16.58615 -15.72466 -15.29635 -14.68687 -14.54216 -14.40115 -14.30603 -13.96241 -13.90064 -13.60266 -13.40708 -13.07421 -12.87640 -12.68553 -12.59397 -12.16533 -12.04172 -11.89545 -11.49463 -11.38416 -11.20471 -11.02509 -10.55250 -10.45892 -10.29873 -10.22789 -10.15876 -9.97740 -9.85108 -9.66825 -9.27185 -9.02933 -8.58558 -7.50390 -7.30625 -6.28611 -4.17088 0.22931 0.60984 1.27884 1.32956 2.10742 2.27654 3.09032 3.17824 3.20864 3.69271 3.83419 4.12065 4.28610 4.33006 4.60719 4.76734 4.93116 5.00488 5.16419 5.20963 5.28405 5.54615 5.55630 5.57585 5.72233 5.80197 5.89431 6.07310 6.15833 6.30527 6.39806 6.45742 6.47500 6.58703 6.71504 6.82391 6.91713 7.22709 7.35439 7.66307 7.69654 8.01361 8.03990 8.40244 9.06146 9.47608 9.91348 10.67743 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.004047 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.604102 B = 6917.512883 C = 7823.173324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.107 3.893 5 N -0.426 5.426 6 C -0.335 4.335 7 H 0.084 0.916 8 C 0.047 3.953 9 N -0.865 5.865 10 Si 0.914 3.086 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.542 3.458 15 O -0.587 6.587 16 C -0.234 4.234 17 C 0.193 3.807 18 N -0.511 5.511 19 C 0.263 3.737 20 S 0.234 5.766 21 C -0.219 4.219 22 C -0.070 4.070 23 C 0.067 3.933 24 N -0.454 5.454 25 C 0.541 3.459 26 O -0.499 6.499 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.049 0.951 36 H 0.269 0.731 37 H 0.178 0.822 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 14.469 2.755 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.016 4.016 5 N -0.143 5.143 6 C -0.463 4.463 7 H 0.102 0.898 8 C -0.158 4.158 9 N -0.502 5.502 10 Si 0.740 3.260 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.328 3.672 15 O -0.471 6.471 16 C -0.249 4.249 17 C 0.045 3.955 18 N -0.239 5.239 19 C -0.102 4.102 20 S 0.485 5.515 21 C -0.338 4.338 22 C -0.129 4.129 23 C -0.060 4.060 24 N -0.165 5.165 25 C 0.342 3.658 26 O -0.373 6.373 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.195 0.805 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.973 15.135 2.857 15.433 hybrid contribution 1.277 -1.669 -0.527 2.167 sum 2.250 13.466 2.330 13.850 Atomic orbital electron populations 1.21760 0.96738 1.00622 1.01401 1.21412 0.94813 0.97762 1.01681 1.21931 0.98158 0.95559 1.01029 1.21755 0.90693 0.84540 1.04611 1.43316 1.54771 1.11811 1.04415 1.19366 1.32520 0.99982 0.94417 0.89808 1.25498 0.94923 0.95640 0.99728 1.69643 1.35713 1.09090 1.35766 0.86068 0.78741 0.79701 0.81480 1.19243 1.20562 1.20279 1.17264 0.80782 0.84629 0.84535 1.90668 1.55910 1.69157 1.31409 1.21521 0.92975 0.98261 1.12128 1.22932 0.99611 0.85154 0.87786 1.68040 1.09982 1.20950 1.24910 1.25444 0.90434 0.96970 0.97308 1.83967 1.00431 0.96723 1.70384 1.23933 1.01942 0.96064 1.11900 1.20256 0.91508 0.98036 1.03123 1.20894 0.89983 0.94240 1.00883 1.45285 1.10200 1.10491 1.50505 1.17254 0.89702 0.78631 0.80227 1.90930 1.51224 1.47277 1.47878 0.93478 0.93142 0.93068 0.92131 0.92442 0.93210 0.92367 0.85730 0.93251 0.91976 0.80460 0.90487 0.89809 0.89770 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.07 5.93 -26.73 -0.16 -2.22 16 3 C -0.13 -2.67 5.50 -26.73 -0.15 -2.82 16 4 C 0.11 2.67 4.90 -4.04 -0.02 2.65 16 5 N -0.43 -11.30 2.54 -116.29 -0.30 -11.60 16 6 C -0.33 -8.79 8.53 -14.99 -0.13 -8.92 16 7 H 0.08 2.11 6.80 -52.48 -0.36 1.76 16 8 C 0.05 1.24 5.36 -17.45 -0.09 1.15 16 9 N -0.86 -23.57 10.76 55.50 0.60 -22.97 16 10 Si 0.91 20.24 29.55 -169.99 -5.02 15.22 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 C 0.54 14.49 6.61 -12.86 -0.08 14.41 16 15 O -0.59 -17.09 16.76 5.17 0.09 -17.00 16 16 C -0.23 -5.46 4.43 -104.64 -0.46 -5.92 16 17 C 0.19 3.73 10.24 -16.97 -0.17 3.56 16 18 N -0.51 -8.93 10.39 -13.56 -0.14 -9.07 16 19 C 0.26 4.21 8.07 -87.58 -0.71 3.50 16 20 S 0.23 2.45 23.13 -107.50 -2.49 -0.04 16 21 C -0.22 -2.12 6.43 -36.04 -0.23 -2.35 16 22 C -0.07 -0.38 10.37 36.00 0.37 -0.01 16 23 C 0.07 0.89 10.38 -16.84 -0.17 0.71 16 24 N -0.45 -8.04 2.82 -67.12 -0.19 -8.23 16 25 C 0.54 12.38 7.55 -14.34 -0.11 12.28 16 26 O -0.50 -13.06 16.93 5.04 0.09 -12.97 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.13 3.28 5.23 -51.93 -0.27 3.01 16 35 H 0.05 1.31 7.54 -51.93 -0.39 0.92 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 37 H 0.18 3.02 8.06 -52.49 -0.42 2.59 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.19 2.28 8.00 -52.49 -0.42 1.86 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -35.06 363.76 -8.86 -43.92 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.23 Total: 3.01 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -1.75 Total: 14.24 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.03 Total: -51.87 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: 0.17 Total: -29.97 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.49 Total: -0.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.06 -8.86 -43.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201217515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.322 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds