Wall clock time and date at job start Tue Mar 31 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47284 * 2 1 4 4 C 1.53000 * 109.47284 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47162 * 180.02562 * 4 3 2 6 6 C 1.36952 * 120.00435 * 264.29412 * 5 4 3 7 7 H 1.08008 * 120.00505 * 135.47752 * 6 5 4 8 8 C 1.38968 * 120.00090 * 315.48321 * 6 5 4 9 9 N 1.31428 * 119.99305 * 2.72877 * 8 6 5 10 10 Si 1.86800 * 120.00241 * 182.73040 * 8 6 5 11 11 H 1.48502 * 109.47000 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.46981 * 119.99648 * 10 8 6 13 13 H 1.48504 * 109.46936 * 239.99993 * 10 8 6 14 14 C 1.34783 * 119.99858 * 84.29276 * 5 4 3 15 15 O 1.21724 * 119.99789 * 4.52573 * 14 5 4 16 16 C 1.46657 * 119.99751 * 184.51705 * 14 5 4 17 17 C 1.40030 * 120.86418 * 75.93426 * 16 14 5 18 18 N 1.31612 * 119.27870 * 180.02562 * 17 16 14 19 19 C 1.33680 * 122.39170 * 0.02562 * 18 17 16 20 20 S 1.71457 * 128.64989 * 179.97438 * 19 18 17 21 21 C 1.75595 * 91.30679 * 179.97438 * 20 19 18 22 22 C 1.50695 * 125.25481 * 180.02562 * 21 20 19 23 23 C 1.31043 * 109.49262 * 359.97438 * 21 20 19 24 24 N 1.35125 * 121.40614 * 359.97438 * 19 18 17 25 25 C 1.36390 * 119.27227 * 0.02562 * 24 19 18 26 26 O 1.21870 * 120.30822 * 179.71979 * 25 24 19 27 27 H 1.08998 * 109.47416 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47114 * 299.99923 * 1 2 3 29 29 H 1.09001 * 109.47143 * 59.99641 * 1 2 3 30 30 H 1.09011 * 109.46951 * 240.00318 * 2 1 3 31 31 H 1.08993 * 109.47283 * 120.00674 * 2 1 3 32 32 H 1.09002 * 109.46983 * 59.99996 * 3 2 1 33 33 H 1.09001 * 109.47324 * 300.00248 * 3 2 1 34 34 H 1.08995 * 109.46972 * 60.00742 * 4 3 2 35 35 H 1.09001 * 109.47143 * 300.00359 * 4 3 2 36 36 H 0.97007 * 119.99077 * 180.02562 * 9 8 6 37 37 H 1.07993 * 120.35808 * 359.97438 * 17 16 14 38 38 H 1.09004 * 109.46815 * 359.97438 * 22 21 20 39 39 H 1.08997 * 109.47317 * 119.97058 * 22 21 20 40 40 H 1.08997 * 109.47285 * 239.97121 * 22 21 20 41 41 H 1.07999 * 122.30927 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3983 3.4304 -1.1785 7 1 4.0783 4.4426 -1.3772 8 6 5.1550 2.7436 -2.1203 9 7 5.4989 1.4940 -1.9021 10 14 5.6834 3.5964 -3.6960 11 1 5.1712 4.9903 -3.7001 12 1 7.1660 3.6132 -3.7765 13 1 5.1324 2.8636 -4.8642 14 6 4.1731 3.4973 1.1630 15 8 3.9500 2.9331 2.2183 16 6 4.5668 4.9100 1.1556 17 6 3.6550 5.9080 0.7901 18 7 4.0418 7.1660 0.7939 19 6 5.2810 7.5331 1.1351 20 16 5.9525 9.1096 1.1956 21 6 7.5020 8.4730 1.7220 22 6 8.7266 9.2996 2.0183 23 6 7.4287 7.1682 1.8184 24 7 6.2106 6.6220 1.4981 25 6 5.8769 5.2997 1.5161 26 8 6.7019 4.4615 1.8356 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 6.0275 1.0147 -2.5594 37 1 2.6456 5.6481 0.5073 38 1 8.5018 10.3536 1.8549 39 1 9.0248 9.1484 3.0557 40 1 9.5391 8.9949 1.3587 41 1 8.2688 6.5641 2.1278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201217515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:16 Heat of formation + Delta-G solvation = -21.214279 kcal Electronic energy + Delta-G solvation = -26881.864764 eV Core-core repulsion = 23081.410887 eV Total energy + Delta-G solvation = -3800.453878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.55098 -40.62141 -39.04098 -38.32974 -37.10837 -35.58277 -34.14885 -33.46107 -32.25898 -29.98356 -28.77589 -27.72231 -26.78932 -24.82007 -24.58375 -22.65075 -21.91628 -21.19804 -20.22117 -19.85706 -19.42364 -18.26019 -18.04486 -17.57757 -16.75464 -16.60107 -16.25491 -16.03857 -15.49559 -15.36781 -15.19259 -15.00917 -14.63288 -14.31229 -14.30652 -14.24193 -13.75631 -13.72198 -13.43820 -13.29494 -13.05901 -12.97263 -12.84186 -12.35467 -12.16885 -12.10219 -11.91397 -11.82805 -11.81980 -11.43457 -11.42585 -11.05477 -11.01637 -10.64863 -10.42628 -9.49349 -8.72003 -8.27420 -6.22105 -1.12964 -0.52330 0.12174 0.22763 0.70143 0.93044 1.34470 1.35684 1.49201 1.89517 2.16631 2.30620 2.84616 2.96246 3.02407 3.22351 3.71030 3.89201 4.02828 4.06473 4.11767 4.30512 4.33815 4.41218 4.54980 4.66556 4.78911 4.83107 4.85109 4.89506 4.94794 5.01998 5.08676 5.16957 5.20414 5.22474 5.34220 5.41455 5.46001 5.65374 6.04124 6.25473 6.39082 6.45276 7.03708 7.47460 7.92352 8.70517 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.004047 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.604102 B = 6917.512883 C = 7823.173324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.113 4.113 4 C 0.107 3.893 5 N -0.437 5.437 6 C -0.342 4.342 7 H 0.092 0.908 8 C -0.002 4.002 9 N -0.900 5.900 10 Si 0.983 3.017 11 H -0.255 1.255 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.536 3.464 15 O -0.631 6.631 16 C -0.309 4.309 17 C 0.236 3.764 18 N -0.523 5.523 19 C 0.239 3.761 20 S 0.355 5.645 21 C -0.174 4.174 22 C -0.076 4.076 23 C 0.012 3.988 24 N -0.450 5.450 25 C 0.532 3.468 26 O -0.563 6.563 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.017 0.983 36 H 0.272 0.728 37 H 0.194 0.806 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 19.268 1.400 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.016 4.016 5 N -0.153 5.153 6 C -0.470 4.470 7 H 0.110 0.890 8 C -0.204 4.204 9 N -0.538 5.538 10 Si 0.805 3.195 11 H -0.179 1.179 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.324 3.676 15 O -0.519 6.519 16 C -0.325 4.325 17 C 0.082 3.918 18 N -0.252 5.252 19 C -0.123 4.123 20 S 0.608 5.392 21 C -0.293 4.293 22 C -0.134 4.134 23 C -0.113 4.113 24 N -0.157 5.157 25 C 0.336 3.664 26 O -0.444 6.444 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.211 0.789 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.292 20.046 1.499 20.144 hybrid contribution 1.358 -2.707 -0.032 3.029 sum 2.650 17.339 1.467 17.602 Atomic orbital electron populations 1.21700 0.93807 1.02380 1.01897 1.21399 0.97311 0.95078 1.01572 1.21777 0.94946 0.97998 1.00434 1.21719 0.93480 0.84176 1.02183 1.43587 1.54796 1.12043 1.04879 1.19650 1.32846 1.00342 0.94180 0.89012 1.26424 0.94684 0.96183 1.03102 1.69788 1.36436 1.10501 1.37080 0.85033 0.77721 0.79249 0.77468 1.17865 1.21103 1.18926 1.17791 0.79783 0.86292 0.83772 1.90583 1.57741 1.70899 1.32725 1.21063 0.94967 0.96911 1.19511 1.23123 0.99285 0.85161 0.84198 1.68169 1.10839 1.19386 1.26775 1.26744 0.90106 0.99551 0.95872 1.83800 0.98327 0.91389 1.65690 1.24745 1.03276 0.94971 1.06312 1.20628 0.89500 0.98607 1.04714 1.21214 0.89075 0.95837 1.05195 1.45099 1.12006 1.09334 1.49278 1.17163 0.89242 0.79922 0.80052 1.90858 1.52661 1.49313 1.51523 0.91089 0.92954 0.92275 0.91948 0.92918 0.94348 0.92090 0.87009 0.96474 0.91824 0.78891 0.87616 0.87852 0.88106 0.78876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.22 16 2 C -0.12 -4.13 5.93 30.59 0.18 -3.95 16 3 C -0.11 -4.97 5.50 30.59 0.17 -4.80 16 4 C 0.11 5.80 4.90 86.38 0.42 6.22 16 5 N -0.44 -24.79 2.54 -640.04 -1.63 -26.42 16 6 C -0.34 -18.74 8.53 84.07 0.72 -18.02 16 7 H 0.09 4.74 6.80 -2.91 -0.02 4.72 16 8 C 0.00 -0.13 5.36 84.93 0.46 0.32 16 9 N -0.90 -51.34 10.76 21.67 0.23 -51.11 16 10 Si 0.98 41.88 29.55 68.60 2.03 43.91 16 11 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 14 C 0.54 30.99 6.61 86.44 0.57 31.56 16 15 O -0.63 -40.19 16.76 -4.43 -0.07 -40.26 16 16 C -0.31 -15.34 4.43 -19.88 -0.09 -15.43 16 17 C 0.24 9.31 10.24 85.16 0.87 10.18 16 18 N -0.52 -17.67 10.39 -196.82 -2.04 -19.71 16 19 C 0.24 7.17 8.07 179.29 1.45 8.61 16 20 S 0.35 5.63 23.13 -56.49 -1.31 4.32 16 21 C -0.17 -2.59 6.43 25.60 0.16 -2.42 16 22 C -0.08 -0.37 10.37 71.23 0.74 0.37 16 23 C 0.01 0.29 10.38 83.76 0.87 1.16 16 24 N -0.45 -15.98 2.82 -483.48 -1.36 -17.34 16 25 C 0.53 25.94 7.55 84.75 0.64 26.58 16 26 O -0.56 -32.15 16.93 -4.89 -0.08 -32.24 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 2.19 8.14 -2.38 -0.02 2.18 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 6.32 5.23 -2.39 -0.01 6.31 16 35 H 0.02 0.99 7.54 -2.39 -0.02 0.97 16 36 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 37 H 0.19 6.69 8.06 -2.91 -0.02 6.66 16 38 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.19 4.67 8.00 -2.91 -0.02 4.65 16 Total: -1.00 -86.72 363.76 4.70 -82.02 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.06 Total: 19.65 kcal Atomic # 6 Polarization: 29.29 SS G_CDS: 7.87 Total: 37.16 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.80 Total: -114.57 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -0.16 Total: -72.50 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.31 Total: 4.32 kcal Total: -86.72 4.70 -82.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201217515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.810 kcal (2) G-P(sol) polarization free energy of solvation -86.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds