Wall clock time and date at job start Tue Mar 31 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47510 * 2 1 4 4 H 1.08994 * 109.47003 * 303.38443 * 3 2 1 5 5 C 1.50699 * 109.47290 * 183.37663 * 3 2 1 6 6 H 1.07999 * 119.99950 * 239.99677 * 5 3 2 7 7 C 1.37874 * 119.99716 * 60.00314 * 5 3 2 8 8 N 1.31521 * 120.00239 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00153 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47052 * 89.99847 * 9 7 5 11 11 H 1.48500 * 109.47574 * 209.99726 * 9 7 5 12 12 H 1.48499 * 109.46984 * 330.00273 * 9 7 5 13 13 N 1.46504 * 109.46944 * 63.38063 * 3 2 1 14 14 S 1.65600 * 119.99725 * 216.62194 * 13 3 2 15 15 O 1.42098 * 106.40374 * 179.31774 * 14 13 3 16 16 O 1.42095 * 106.40569 * 312.23781 * 14 13 3 17 17 C 1.76202 * 107.21836 * 65.77643 * 14 13 3 18 18 C 1.38277 * 119.93435 * 266.84112 * 17 14 13 19 19 C 1.38116 * 120.06696 * 179.76683 * 18 17 14 20 20 C 1.38840 * 119.93267 * 0.51073 * 19 18 17 21 21 N 1.40183 * 120.07049 * 179.76933 * 20 19 18 22 22 C 1.35226 * 126.04987 * 359.68667 * 21 20 19 23 23 C 1.35320 * 107.71170 * 179.89907 * 22 21 20 24 24 C 1.39919 * 107.93210 * 0.36796 * 23 22 21 25 25 N 1.30875 * 108.24089 * 359.77041 * 24 23 22 26 26 C 1.38834 * 119.86838 * 359.74188 * 20 19 18 27 27 C 1.38123 * 119.93218 * 0.02562 * 26 20 19 28 28 H 1.09001 * 109.46726 * 54.53468 * 1 2 3 29 29 H 1.08999 * 109.47469 * 174.53788 * 1 2 3 30 30 H 1.09005 * 109.47387 * 294.54136 * 1 2 3 31 31 H 1.08999 * 109.47169 * 239.99736 * 2 1 3 32 32 H 1.09005 * 109.47134 * 120.00188 * 2 1 3 33 33 H 0.97001 * 120.00239 * 180.02562 * 8 7 5 34 34 H 0.96991 * 120.00276 * 36.89732 * 13 3 2 35 35 H 1.07998 * 119.96575 * 0.02562 * 18 17 14 36 36 H 1.07997 * 120.03660 * 180.27073 * 19 18 17 37 37 H 1.08005 * 126.14233 * 0.02562 * 22 21 20 38 38 H 1.08006 * 126.03523 * 180.13572 * 23 22 21 39 39 H 1.07999 * 125.88048 * 179.79464 * 24 23 22 40 40 H 1.08001 * 120.04117 * 180.02562 * 26 20 19 41 41 H 1.07997 * 119.97023 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6281 1.9735 -0.8581 5 6 3.5447 1.4432 -0.0837 6 1 4.1291 1.8952 0.7041 7 6 4.1752 0.8670 -1.1660 8 7 3.4635 0.3163 -2.1251 9 14 6.0403 0.8685 -1.2702 10 1 6.5732 -0.3570 -0.6226 11 1 6.4565 0.8961 -2.6954 12 1 6.5739 2.0675 -0.5753 13 7 1.6194 2.1092 1.2349 14 16 1.1844 3.7068 1.2064 15 8 0.8184 4.0468 2.5367 16 8 2.2006 4.3865 0.4822 17 6 -0.2833 3.8306 0.2394 18 6 -0.1975 4.1070 -1.1128 19 6 -1.3460 4.1999 -1.8743 20 6 -2.5881 4.0260 -1.2788 21 7 -3.7558 4.1244 -2.0481 22 6 -3.8161 4.3889 -3.3729 23 6 -5.1206 4.3957 -3.7324 24 6 -5.8839 4.1350 -2.5891 25 7 -5.0671 3.9724 -1.5795 26 6 -2.6713 3.7538 0.0800 27 6 -1.5190 3.6573 0.8354 28 1 -0.3633 0.5963 -0.8370 29 1 -0.3634 -1.0230 -0.0978 30 1 -0.3634 0.4269 0.9349 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9071 -0.0894 -2.8864 34 1 1.5994 1.6159 2.0698 35 1 0.7688 4.2462 -1.5746 36 1 -1.2781 4.4114 -2.9312 37 1 -2.9741 4.5615 -4.0270 38 1 -5.5051 4.5747 -4.7257 39 1 -6.9616 4.0776 -2.5470 40 1 -3.6360 3.6176 0.5460 41 1 -1.5831 3.4460 1.8926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259373270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:11 Heat of formation + Delta-G solvation = 33.488995 kcal Electronic energy + Delta-G solvation = -26734.049938 eV Core-core repulsion = 22935.968172 eV Total energy + Delta-G solvation = -3798.081766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76785 -39.09751 -36.69323 -35.96318 -35.24128 -33.79454 -32.19947 -31.45622 -30.65602 -30.34778 -29.28646 -26.65651 -24.02778 -23.38971 -23.05924 -21.07517 -20.83316 -20.21221 -19.07866 -18.55071 -17.44918 -16.96837 -16.23874 -15.75075 -15.50808 -15.42615 -15.05989 -14.48989 -14.41496 -13.99098 -13.71257 -13.62410 -13.24464 -13.12994 -12.99704 -12.92780 -12.89724 -11.91083 -11.67934 -11.55919 -11.49403 -11.34728 -11.23698 -10.97701 -10.97029 -10.80186 -10.72872 -10.58549 -10.23955 -9.88402 -9.84565 -9.71849 -9.45473 -9.17792 -8.46663 -8.44350 -8.26690 -6.09924 -4.16231 0.35244 1.03836 1.20075 1.82664 2.08615 2.49069 3.28874 3.35797 3.38189 3.42764 3.81344 4.18369 4.30369 4.41647 4.46039 4.61025 4.72898 4.89123 5.12423 5.19730 5.21155 5.30946 5.42431 5.54146 5.61900 5.80289 5.85636 5.99177 6.05625 6.10233 6.12162 6.27305 6.33609 6.46261 6.51502 6.74468 6.89333 6.90314 7.06776 7.32564 7.53043 7.61402 7.85766 8.05455 8.21097 8.87071 9.50112 10.94483 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.003630 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.299936 B = 7711.870860 C = 8478.647743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.281 3.719 4 H 0.042 0.958 5 C -0.520 4.520 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 N -1.099 6.099 14 S 2.690 3.310 15 O -0.983 6.983 16 O -0.946 6.946 17 C -0.679 4.679 18 C 0.017 3.983 19 C -0.163 4.163 20 C 0.205 3.795 21 N -0.326 5.326 22 C 0.057 3.943 23 C -0.263 4.263 24 C 0.056 3.944 25 N -0.289 5.289 26 C -0.145 4.145 27 C 0.005 3.995 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.407 0.593 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.181 0.819 38 H 0.155 0.845 39 H 0.190 0.810 40 H 0.143 0.857 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.149 5.361 -1.973 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.060 0.940 5 C -0.559 4.559 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.860 5.860 14 S 2.777 3.223 15 O -0.973 6.973 16 O -0.935 6.935 17 C -0.764 4.764 18 C -0.003 4.003 19 C -0.184 4.184 20 C 0.112 3.888 21 N -0.101 5.101 22 C -0.085 4.085 23 C -0.291 4.291 24 C -0.131 4.131 25 N -0.108 5.108 26 C -0.166 4.166 27 C -0.015 4.015 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.198 0.802 38 H 0.173 0.827 39 H 0.207 0.793 40 H 0.160 0.840 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.573 5.825 -0.688 15.710 hybrid contribution 0.152 -0.430 -1.326 1.402 sum -14.422 5.395 -2.014 15.529 Atomic orbital electron populations 1.21831 0.99049 0.99590 0.99997 1.21888 0.91818 0.99478 1.03453 1.18568 0.94502 0.89920 0.79267 0.94047 1.21524 0.91087 1.36888 1.06447 0.91718 1.24890 0.98600 0.94960 0.95359 1.69838 1.35210 1.38262 1.09913 0.86514 0.85296 0.78524 0.77256 1.20708 1.21184 1.19630 1.55520 1.81646 1.30344 1.18503 1.01975 0.73617 0.73694 0.72998 1.93522 1.84710 1.83270 1.35833 1.93606 1.53629 1.72448 1.73854 1.31419 1.19709 1.16272 1.08990 1.20892 0.99154 0.88917 0.91361 1.20893 0.90188 1.06418 1.00926 1.17788 0.82757 0.97242 0.91034 1.46010 1.04586 1.53121 1.06382 1.22759 1.00028 1.00392 0.85315 1.21641 0.91829 1.14744 1.00882 1.24122 1.00358 0.98173 0.90489 1.77471 0.86089 1.23854 1.23338 1.20911 1.00073 1.04018 0.91608 1.20788 0.90080 0.90677 0.99944 0.93935 0.94525 0.94350 0.87634 0.93897 0.92725 0.75981 0.82659 0.84477 0.80219 0.82713 0.79274 0.83965 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.72 37.16 0.36 -2.26 16 2 C -0.13 -2.67 5.38 -26.73 -0.14 -2.81 16 3 C 0.28 6.29 2.17 -69.08 -0.15 6.14 16 4 H 0.04 0.97 7.54 -51.93 -0.39 0.58 16 5 C -0.52 -13.44 8.84 -34.44 -0.30 -13.75 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -23.61 11.30 55.43 0.63 -22.98 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -1.10 -20.83 4.93 -5.88 -0.03 -20.86 16 14 S 2.69 49.77 5.64 -107.50 -0.61 49.17 16 15 O -0.98 -18.88 17.35 -57.18 -0.99 -19.87 16 16 O -0.95 -20.69 16.94 -57.18 -0.97 -21.66 16 17 C -0.68 -10.90 5.88 -39.55 -0.23 -11.13 16 18 C 0.02 0.25 9.16 -39.61 -0.36 -0.11 16 19 C -0.16 -2.16 9.46 -39.40 -0.37 -2.53 16 20 C 0.20 2.83 6.69 -83.59 -0.56 2.27 16 21 N -0.33 -4.20 3.80 -10.70 -0.04 -4.24 16 22 C 0.06 0.58 10.80 -17.10 -0.18 0.40 16 23 C -0.26 -2.32 10.81 -39.99 -0.43 -2.76 16 24 C 0.06 0.54 12.03 -17.33 -0.21 0.33 16 25 N -0.29 -3.73 11.87 30.64 0.36 -3.37 16 26 C -0.15 -2.01 9.66 -39.40 -0.38 -2.39 16 27 C 0.00 0.07 9.51 -39.61 -0.38 -0.31 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.61 7.86 -51.93 -0.41 0.20 16 31 H 0.11 2.52 5.99 -51.93 -0.31 2.21 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.41 6.78 8.86 -34.47 -0.31 6.47 16 35 H 0.16 2.40 7.54 -52.49 -0.40 2.00 16 36 H 0.14 1.40 6.74 -52.49 -0.35 1.05 16 37 H 0.18 1.28 7.04 -52.48 -0.37 0.92 16 38 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 39 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.14 1.81 7.70 -52.49 -0.40 1.41 16 41 H 0.15 1.82 7.68 -52.49 -0.40 1.42 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -32.40 361.70 -9.66 -42.06 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.00 Total: 7.92 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -3.44 Total: -27.34 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.92 Total: -51.45 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.96 Total: -41.54 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 49.77 SS G_CDS: -0.61 Total: 49.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.40 -9.66 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259373270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.549 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds