Wall clock time and date at job start Tue Mar 31 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47510 * 2 1 4 4 H 1.08994 * 109.47003 * 303.38443 * 3 2 1 5 5 C 1.50699 * 109.47290 * 183.37663 * 3 2 1 6 6 H 1.07999 * 119.99950 * 239.99677 * 5 3 2 7 7 C 1.37874 * 119.99716 * 60.00314 * 5 3 2 8 8 N 1.31521 * 120.00239 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00153 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47052 * 89.99847 * 9 7 5 11 11 H 1.48500 * 109.47574 * 209.99726 * 9 7 5 12 12 H 1.48499 * 109.46984 * 330.00273 * 9 7 5 13 13 N 1.46504 * 109.46944 * 63.38063 * 3 2 1 14 14 S 1.65600 * 119.99725 * 216.62194 * 13 3 2 15 15 O 1.42098 * 106.40374 * 179.31774 * 14 13 3 16 16 O 1.42095 * 106.40569 * 312.23781 * 14 13 3 17 17 C 1.76202 * 107.21836 * 65.77643 * 14 13 3 18 18 C 1.38277 * 119.93435 * 266.84112 * 17 14 13 19 19 C 1.38116 * 120.06696 * 179.76683 * 18 17 14 20 20 C 1.38840 * 119.93267 * 0.51073 * 19 18 17 21 21 N 1.40183 * 120.07049 * 179.76933 * 20 19 18 22 22 C 1.35226 * 126.04987 * 359.68667 * 21 20 19 23 23 C 1.35320 * 107.71170 * 179.89907 * 22 21 20 24 24 C 1.39919 * 107.93210 * 0.36796 * 23 22 21 25 25 N 1.30875 * 108.24089 * 359.77041 * 24 23 22 26 26 C 1.38834 * 119.86838 * 359.74188 * 20 19 18 27 27 C 1.38123 * 119.93218 * 0.02562 * 26 20 19 28 28 H 1.09001 * 109.46726 * 54.53468 * 1 2 3 29 29 H 1.08999 * 109.47469 * 174.53788 * 1 2 3 30 30 H 1.09005 * 109.47387 * 294.54136 * 1 2 3 31 31 H 1.08999 * 109.47169 * 239.99736 * 2 1 3 32 32 H 1.09005 * 109.47134 * 120.00188 * 2 1 3 33 33 H 0.97001 * 120.00239 * 180.02562 * 8 7 5 34 34 H 0.96991 * 120.00276 * 36.89732 * 13 3 2 35 35 H 1.07998 * 119.96575 * 0.02562 * 18 17 14 36 36 H 1.07997 * 120.03660 * 180.27073 * 19 18 17 37 37 H 1.08005 * 126.14233 * 0.02562 * 22 21 20 38 38 H 1.08006 * 126.03523 * 180.13572 * 23 22 21 39 39 H 1.07999 * 125.88048 * 179.79464 * 24 23 22 40 40 H 1.08001 * 120.04117 * 180.02562 * 26 20 19 41 41 H 1.07997 * 119.97023 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6281 1.9735 -0.8581 5 6 3.5447 1.4432 -0.0837 6 1 4.1291 1.8952 0.7041 7 6 4.1752 0.8670 -1.1660 8 7 3.4635 0.3163 -2.1251 9 14 6.0403 0.8685 -1.2702 10 1 6.5732 -0.3570 -0.6226 11 1 6.4565 0.8961 -2.6954 12 1 6.5739 2.0675 -0.5753 13 7 1.6194 2.1092 1.2349 14 16 1.1844 3.7068 1.2064 15 8 0.8184 4.0468 2.5367 16 8 2.2006 4.3865 0.4822 17 6 -0.2833 3.8306 0.2394 18 6 -0.1975 4.1070 -1.1128 19 6 -1.3460 4.1999 -1.8743 20 6 -2.5881 4.0260 -1.2788 21 7 -3.7558 4.1244 -2.0481 22 6 -3.8161 4.3889 -3.3729 23 6 -5.1206 4.3957 -3.7324 24 6 -5.8839 4.1350 -2.5891 25 7 -5.0671 3.9724 -1.5795 26 6 -2.6713 3.7538 0.0800 27 6 -1.5190 3.6573 0.8354 28 1 -0.3633 0.5963 -0.8370 29 1 -0.3634 -1.0230 -0.0978 30 1 -0.3634 0.4269 0.9349 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9071 -0.0894 -2.8864 34 1 1.5994 1.6159 2.0698 35 1 0.7688 4.2462 -1.5746 36 1 -1.2781 4.4114 -2.9312 37 1 -2.9741 4.5615 -4.0270 38 1 -5.5051 4.5747 -4.7257 39 1 -6.9616 4.0776 -2.5470 40 1 -3.6360 3.6176 0.5460 41 1 -1.5831 3.4460 1.8926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259373270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:10 Heat of formation + Delta-G solvation = 12.189630 kcal Electronic energy + Delta-G solvation = -26734.973548 eV Core-core repulsion = 22935.968172 eV Total energy + Delta-G solvation = -3799.005376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58144 -40.15040 -38.27164 -37.65334 -36.82596 -34.75896 -34.11230 -32.49110 -32.22356 -31.19231 -30.25332 -28.50099 -25.01545 -24.85911 -24.38548 -22.01116 -21.93241 -21.60522 -20.48118 -19.53189 -18.78217 -18.71806 -17.91446 -17.17753 -16.66934 -16.37393 -16.30467 -15.98087 -15.43260 -15.37500 -14.86251 -14.79250 -14.72545 -14.63708 -14.09095 -14.04631 -13.68458 -13.55191 -13.34714 -13.12276 -13.01945 -13.00883 -12.70816 -12.56871 -12.49637 -12.11278 -12.04251 -11.78937 -11.66826 -11.60047 -11.54638 -11.38676 -10.43068 -10.29507 -10.26377 -9.98916 -9.36446 -8.07524 -6.19371 -0.72763 -0.39723 0.11137 0.93629 1.23106 1.43585 1.46492 1.56195 1.80581 2.16512 2.44398 2.49426 2.87725 3.19262 3.28493 3.45057 3.61421 3.85781 3.92000 4.10743 4.21343 4.33996 4.47861 4.52400 4.61587 4.67531 4.70412 4.75416 4.78398 4.89219 4.94032 5.02157 5.03919 5.14970 5.35759 5.41539 5.44094 5.64345 5.70924 5.82393 6.00979 6.05068 6.30596 6.48040 6.53975 6.86927 7.48828 8.94611 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.003630 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.299936 B = 7711.870860 C = 8478.647743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.288 3.712 4 H 0.029 0.971 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.279 1.279 13 N -1.098 6.098 14 S 2.704 3.296 15 O -0.992 6.992 16 O -0.987 6.987 17 C -0.688 4.688 18 C 0.003 3.997 19 C -0.160 4.160 20 C 0.209 3.791 21 N -0.345 5.345 22 C 0.042 3.958 23 C -0.255 4.255 24 C 0.062 3.938 25 N -0.331 5.331 26 C -0.150 4.150 27 C 0.006 3.994 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.417 0.583 35 H 0.146 0.854 36 H 0.167 0.833 37 H 0.205 0.795 38 H 0.186 0.814 39 H 0.224 0.776 40 H 0.152 0.848 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.338 5.357 -2.944 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.182 3.818 4 H 0.046 0.954 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.859 5.859 14 S 2.795 3.205 15 O -0.982 6.982 16 O -0.977 6.977 17 C -0.778 4.778 18 C -0.017 4.017 19 C -0.181 4.181 20 C 0.115 3.885 21 N -0.121 5.121 22 C -0.098 4.098 23 C -0.283 4.283 24 C -0.126 4.126 25 N -0.149 5.149 26 C -0.171 4.171 27 C -0.014 4.014 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.164 0.836 36 H 0.184 0.816 37 H 0.222 0.778 38 H 0.204 0.796 39 H 0.240 0.760 40 H 0.170 0.830 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.739 5.810 -1.635 17.793 hybrid contribution 0.626 -0.367 -1.118 1.334 sum -16.112 5.443 -2.753 17.228 Atomic orbital electron populations 1.21725 0.96345 1.00690 1.00814 1.21712 0.94203 0.98008 1.02142 1.18294 0.92631 0.90816 0.80014 0.95377 1.21841 0.93182 1.36774 1.06215 0.93147 1.25477 1.01810 0.94968 0.95334 1.69930 1.36192 1.38576 1.10101 0.85774 0.81603 0.78296 0.77286 1.19878 1.20645 1.20397 1.55292 1.82194 1.30329 1.18067 1.01188 0.73729 0.72932 0.72622 1.93499 1.84947 1.83231 1.36571 1.93549 1.56240 1.73331 1.74595 1.30857 1.18649 1.19175 1.09080 1.20923 0.99703 0.89715 0.91401 1.21086 0.89261 1.05617 1.02153 1.17937 0.83539 0.95738 0.91264 1.46089 1.04279 1.54548 1.07204 1.23407 1.01729 1.00028 0.84650 1.22103 0.91193 1.13024 1.01970 1.24843 1.01785 0.95898 0.90053 1.77453 0.86493 1.25840 1.25111 1.21043 1.00144 1.04018 0.91910 1.20958 0.89506 0.90162 1.00770 0.94503 0.92959 0.92423 0.90436 0.93657 0.92671 0.74838 0.83605 0.81597 0.77783 0.79626 0.75966 0.83026 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.72 71.98 0.70 -4.05 16 2 C -0.12 -5.09 5.38 30.59 0.16 -4.93 16 3 C 0.29 13.09 2.17 44.24 0.10 13.18 16 4 H 0.03 1.37 7.54 -2.39 -0.02 1.35 16 5 C -0.54 -28.58 8.84 25.60 0.23 -28.35 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.02 1.28 5.30 84.65 0.45 1.72 16 8 N -0.91 -48.60 11.30 21.45 0.24 -48.36 16 9 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -1.10 -42.10 4.93 -172.52 -0.85 -42.95 16 14 S 2.70 101.89 5.64 -56.49 -0.32 101.57 16 15 O -0.99 -38.19 17.35 -128.00 -2.22 -40.41 16 16 O -0.99 -44.83 16.94 -128.00 -2.17 -47.00 16 17 C -0.69 -22.10 5.88 22.29 0.13 -21.96 16 18 C 0.00 0.08 9.16 22.25 0.20 0.29 16 19 C -0.16 -4.05 9.46 22.38 0.21 -3.84 16 20 C 0.21 5.48 6.69 38.09 0.25 5.73 16 21 N -0.35 -8.21 3.80 -187.76 -0.71 -8.93 16 22 C 0.04 0.73 10.80 83.50 0.90 1.63 16 23 C -0.26 -3.60 10.81 22.00 0.24 -3.36 16 24 C 0.06 1.00 12.03 85.24 1.03 2.02 16 25 N -0.33 -7.85 11.87 -56.97 -0.68 -8.53 16 26 C -0.15 -3.97 9.66 22.39 0.22 -3.75 16 27 C 0.01 0.16 9.51 22.25 0.21 0.37 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.74 7.86 -2.38 -0.02 1.72 16 31 H 0.08 3.75 5.99 -2.39 -0.01 3.73 16 32 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.42 13.89 8.86 -96.76 -0.86 13.04 16 35 H 0.15 4.69 7.54 -2.91 -0.02 4.66 16 36 H 0.17 3.06 6.74 -2.91 -0.02 3.04 16 37 H 0.21 2.26 7.04 -2.91 -0.02 2.24 16 38 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.15 3.66 7.70 -2.91 -0.02 3.64 16 41 H 0.16 3.84 7.68 -2.91 -0.02 3.82 16 Total: -1.00 -70.28 361.70 0.56 -69.73 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.21 Total: 25.25 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 5.03 Total: -45.30 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -2.00 Total: -108.77 kcal Atomic # 8 Polarization: -83.02 SS G_CDS: -4.39 Total: -87.41 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 101.89 SS G_CDS: -0.32 Total: 101.57 kcal Total: -70.28 0.56 -69.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259373270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.917 kcal (2) G-P(sol) polarization free energy of solvation -70.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds