Wall clock time and date at job start Tue Mar 31 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 H 1.08996 * 109.47583 * 54.63848 * 3 2 1 5 5 C 1.50704 * 109.46913 * 174.63806 * 3 2 1 6 6 H 1.08000 * 120.00246 * 120.00219 * 5 3 2 7 7 C 1.37877 * 119.99713 * 299.98909 * 5 3 2 8 8 N 1.31523 * 119.99881 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00340 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47263 * 89.99176 * 9 7 5 11 11 H 1.48495 * 109.47340 * 209.99593 * 9 7 5 12 12 H 1.48502 * 109.46628 * 329.99437 * 9 7 5 13 13 N 1.46500 * 109.47131 * 294.63165 * 3 2 1 14 14 S 1.65590 * 120.00304 * 144.21994 * 13 3 2 15 15 O 1.42104 * 106.40249 * 310.19772 * 14 13 3 16 16 O 1.42100 * 106.40584 * 177.27844 * 14 13 3 17 17 C 1.76202 * 107.21830 * 63.73888 * 14 13 3 18 18 C 1.38284 * 119.92888 * 269.72520 * 17 14 13 19 19 C 1.38127 * 120.06154 * 179.76474 * 18 17 14 20 20 C 1.38839 * 119.93002 * 0.53455 * 19 18 17 21 21 N 1.40187 * 120.06295 * 179.70341 * 20 19 18 22 22 C 1.35223 * 126.05429 * 359.73105 * 21 20 19 23 23 C 1.35316 * 107.71130 * 179.83944 * 22 21 20 24 24 C 1.39921 * 107.93599 * 0.42805 * 23 22 21 25 25 N 1.30876 * 108.23756 * 359.73287 * 24 23 22 26 26 C 1.38834 * 119.86745 * 359.71834 * 20 19 18 27 27 C 1.38113 * 119.93849 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47131 * 175.73479 * 1 2 3 29 29 H 1.08999 * 109.46900 * 295.73541 * 1 2 3 30 30 H 1.08997 * 109.47014 * 55.73227 * 1 2 3 31 31 H 1.08992 * 109.47107 * 239.99527 * 2 1 3 32 32 H 1.09008 * 109.47265 * 119.99513 * 2 1 3 33 33 H 0.96997 * 119.99586 * 179.97438 * 8 7 5 34 34 H 0.97009 * 119.99872 * 324.22250 * 13 3 2 35 35 H 1.07992 * 119.97019 * 0.02562 * 18 17 14 36 36 H 1.07999 * 120.03146 * 180.25458 * 19 18 17 37 37 H 1.08002 * 126.14475 * 359.97197 * 22 21 20 38 38 H 1.08004 * 126.03520 * 180.12080 * 23 22 21 39 39 H 1.07993 * 125.88139 * 179.75822 * 24 23 22 40 40 H 1.08002 * 120.02821 * 180.02562 * 26 20 19 41 41 H 1.07998 * 119.96884 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 0.8380 5 6 3.5412 1.4445 0.1328 6 1 4.1511 1.8874 -0.6406 7 6 4.1358 0.8811 1.2418 8 7 5.4460 0.8824 1.3575 9 14 3.0809 0.1146 2.5794 10 1 2.8617 -1.3221 2.2745 11 1 3.7704 0.2434 3.8882 12 1 1.7719 0.8134 2.6386 13 7 1.6600 2.0948 -1.2555 14 16 1.2447 3.6977 -1.2632 15 8 0.2851 3.8686 -0.2291 16 8 0.9953 4.0412 -2.6193 17 6 2.6714 4.6085 -0.7736 18 6 2.8866 4.8874 0.5636 19 6 4.0066 5.5970 0.9509 20 6 4.9109 6.0399 -0.0049 21 7 6.0453 6.7656 0.3845 22 6 6.3759 7.1067 1.6505 23 6 7.5392 7.7962 1.6006 24 6 7.9282 7.8885 0.2598 25 7 7.0338 7.2713 -0.4696 26 6 4.6892 5.7628 -1.3472 27 6 3.5703 5.0483 -1.7279 28 1 -0.3633 -1.0248 -0.0764 29 1 -0.3633 0.4462 0.9257 30 1 -0.3633 0.5786 -0.8493 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 5.8643 0.4863 2.1379 34 1 1.6517 1.5876 -2.0825 35 1 2.1805 4.5464 1.3062 36 1 4.1763 5.8109 1.9958 37 1 5.8138 6.8693 2.5417 38 1 8.0708 8.2075 2.4461 39 1 8.8142 8.3833 -0.1096 40 1 5.3912 6.1058 -2.0929 41 1 3.3972 4.8329 -2.7719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259373271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:14 Heat of formation + Delta-G solvation = 40.906946 kcal Electronic energy + Delta-G solvation = -27021.863011 eV Core-core repulsion = 23224.102911 eV Total energy + Delta-G solvation = -3797.760099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53673 -38.83698 -36.88673 -36.26906 -35.41434 -33.56716 -32.31037 -31.21497 -31.11337 -30.12407 -29.07602 -27.27861 -23.82346 -23.15280 -22.78380 -20.87683 -20.75438 -20.55361 -19.11173 -18.37555 -17.63367 -16.89896 -16.70546 -15.77003 -15.33633 -15.26561 -15.04823 -14.55956 -14.28294 -14.09928 -13.69258 -13.56699 -13.45538 -12.90658 -12.82583 -12.77450 -12.70764 -12.28263 -12.13804 -11.73701 -11.64615 -11.58478 -11.27360 -11.23389 -10.90053 -10.77528 -10.64612 -10.55947 -10.44725 -10.10669 -9.83311 -9.52690 -9.23310 -8.88793 -8.72730 -8.45149 -8.17428 -6.24258 -4.26816 0.59020 1.01418 1.49124 2.06077 2.32737 2.70135 3.13761 3.26201 3.27159 3.49976 3.77945 4.23013 4.26659 4.41394 4.67283 4.74049 4.96982 5.01104 5.03964 5.28591 5.38957 5.50369 5.64957 5.70494 5.74656 5.79122 5.82078 5.94325 6.05438 6.06137 6.18710 6.24430 6.29881 6.43716 6.51311 6.55760 6.62073 6.75745 6.84658 7.14790 7.15750 7.42469 7.55225 7.74071 8.32178 8.81018 9.35343 10.87692 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.004758 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.260912 B = 5883.142268 C = 7454.411779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.245 3.755 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.871 3.129 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.259 1.259 13 N -1.094 6.094 14 S 2.700 3.300 15 O -0.967 6.967 16 O -0.979 6.979 17 C -0.665 4.665 18 C 0.030 3.970 19 C -0.156 4.156 20 C 0.209 3.791 21 N -0.322 5.322 22 C 0.059 3.941 23 C -0.265 4.265 24 C 0.054 3.946 25 N -0.288 5.288 26 C -0.143 4.143 27 C 0.007 3.993 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.411 0.589 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.179 0.821 38 H 0.154 0.846 39 H 0.189 0.811 40 H 0.141 0.859 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 9.461 -0.096 9.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.140 3.860 4 H 0.066 0.934 5 C -0.575 4.575 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.854 5.854 14 S 2.789 3.211 15 O -0.957 6.957 16 O -0.969 6.969 17 C -0.752 4.752 18 C 0.010 3.990 19 C -0.178 4.178 20 C 0.116 3.884 21 N -0.097 5.097 22 C -0.083 4.083 23 C -0.294 4.294 24 C -0.134 4.134 25 N -0.107 5.107 26 C -0.164 4.164 27 C -0.013 4.013 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.196 0.804 38 H 0.171 0.829 39 H 0.206 0.794 40 H 0.158 0.842 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.044 9.508 -1.196 9.799 hybrid contribution 0.982 -0.565 1.688 2.033 sum -1.063 8.943 0.492 9.019 Atomic orbital electron populations 1.21870 0.97334 1.00358 1.01751 1.22142 0.93989 0.99121 1.01934 1.19034 0.95876 0.90189 0.80921 0.93399 1.21388 0.89221 1.39647 1.07232 0.89900 1.24891 0.94713 0.95261 0.97625 1.69890 1.08830 1.44400 1.29340 0.87112 0.81131 0.80362 0.81395 1.20129 1.22162 1.18407 1.55219 1.86152 1.26658 1.17341 1.01477 0.73829 0.72881 0.72952 1.93552 1.57156 1.85878 1.59106 1.93533 1.84888 1.83526 1.34984 1.30891 1.23644 1.19075 1.01594 1.20604 0.94596 0.89668 0.94121 1.20771 0.95344 1.03012 0.98665 1.17739 0.83973 0.92040 0.94640 1.45985 1.17758 1.40947 1.05040 1.22721 0.98032 0.98583 0.88969 1.21596 0.99252 1.10496 0.98036 1.24077 0.98654 0.98165 0.92458 1.77453 0.99473 1.16343 1.17427 1.20831 0.99335 1.02244 0.93963 1.20679 0.90566 0.90994 0.99082 0.93761 0.93100 0.92778 0.91450 0.92260 0.92465 0.75566 0.83571 0.84806 0.80366 0.82866 0.79404 0.84155 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.85 37.16 0.37 -2.22 16 2 C -0.13 -2.57 5.03 -26.73 -0.13 -2.70 16 3 C 0.25 5.12 1.86 -69.08 -0.13 5.00 16 4 H 0.05 1.04 6.60 -51.93 -0.34 0.69 16 5 C -0.54 -13.19 9.42 -34.44 -0.32 -13.51 16 6 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 7 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.89 -25.06 13.96 55.43 0.77 -24.29 16 9 Si 0.87 19.87 24.41 -169.99 -4.15 15.72 16 10 H -0.27 -6.13 6.83 56.52 0.39 -5.75 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -5.62 6.53 56.52 0.37 -5.25 16 13 N -1.09 -19.69 4.85 -5.88 -0.03 -19.71 16 14 S 2.70 48.27 5.71 -107.50 -0.61 47.65 16 15 O -0.97 -18.96 16.66 -57.17 -0.95 -19.92 16 16 O -0.98 -18.25 17.28 -57.17 -0.99 -19.24 16 17 C -0.67 -11.73 5.93 -39.55 -0.23 -11.97 16 18 C 0.03 0.52 9.51 -39.61 -0.38 0.14 16 19 C -0.16 -2.51 9.46 -39.40 -0.37 -2.88 16 20 C 0.21 3.51 6.69 -83.59 -0.56 2.95 16 21 N -0.32 -5.07 3.80 -10.70 -0.04 -5.11 16 22 C 0.06 0.76 10.80 -17.10 -0.18 0.58 16 23 C -0.27 -2.97 10.80 -39.99 -0.43 -3.41 16 24 C 0.05 0.65 12.03 -17.33 -0.21 0.44 16 25 N -0.29 -4.46 11.87 30.64 0.36 -4.10 16 26 C -0.14 -2.38 9.66 -39.41 -0.38 -2.76 16 27 C 0.01 0.11 9.51 -39.61 -0.38 -0.27 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.84 7.65 -51.93 -0.40 0.44 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.23 3.21 -51.92 -0.17 1.06 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.41 6.40 8.85 -34.46 -0.30 6.10 16 35 H 0.15 2.35 7.60 -52.49 -0.40 1.95 16 36 H 0.13 1.73 6.74 -52.49 -0.35 1.38 16 37 H 0.18 1.74 7.04 -52.49 -0.37 1.38 16 38 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.14 2.17 7.70 -52.49 -0.40 1.77 16 41 H 0.14 2.09 7.61 -52.49 -0.40 1.70 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -32.72 354.90 -8.59 -41.31 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.86 Total: 10.99 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -3.44 Total: -28.66 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 1.07 Total: -53.21 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.94 Total: -39.16 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.15 Total: 15.72 kcal Atomic # 16 Polarization: 48.27 SS G_CDS: -0.61 Total: 47.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.72 -8.59 -41.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259373271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.217 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds