Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 H 1.08996 * 109.47583 * 54.63848 * 3 2 1 5 5 C 1.50704 * 109.46913 * 174.63806 * 3 2 1 6 6 H 1.08000 * 120.00246 * 120.00219 * 5 3 2 7 7 C 1.37877 * 119.99713 * 299.98909 * 5 3 2 8 8 N 1.31523 * 119.99881 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00340 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47263 * 89.99176 * 9 7 5 11 11 H 1.48495 * 109.47340 * 209.99593 * 9 7 5 12 12 H 1.48502 * 109.46628 * 329.99437 * 9 7 5 13 13 N 1.46500 * 109.47131 * 294.63165 * 3 2 1 14 14 S 1.65590 * 120.00304 * 144.21994 * 13 3 2 15 15 O 1.42104 * 106.40249 * 310.19772 * 14 13 3 16 16 O 1.42100 * 106.40584 * 177.27844 * 14 13 3 17 17 C 1.76202 * 107.21830 * 63.73888 * 14 13 3 18 18 C 1.38284 * 119.92888 * 269.72520 * 17 14 13 19 19 C 1.38127 * 120.06154 * 179.76474 * 18 17 14 20 20 C 1.38839 * 119.93002 * 0.53455 * 19 18 17 21 21 N 1.40187 * 120.06295 * 179.70341 * 20 19 18 22 22 C 1.35223 * 126.05429 * 359.73105 * 21 20 19 23 23 C 1.35316 * 107.71130 * 179.83944 * 22 21 20 24 24 C 1.39921 * 107.93599 * 0.42805 * 23 22 21 25 25 N 1.30876 * 108.23756 * 359.73287 * 24 23 22 26 26 C 1.38834 * 119.86745 * 359.71834 * 20 19 18 27 27 C 1.38113 * 119.93849 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47131 * 175.73479 * 1 2 3 29 29 H 1.08999 * 109.46900 * 295.73541 * 1 2 3 30 30 H 1.08997 * 109.47014 * 55.73227 * 1 2 3 31 31 H 1.08992 * 109.47107 * 239.99527 * 2 1 3 32 32 H 1.09008 * 109.47265 * 119.99513 * 2 1 3 33 33 H 0.96997 * 119.99586 * 179.97438 * 8 7 5 34 34 H 0.97009 * 119.99872 * 324.22250 * 13 3 2 35 35 H 1.07992 * 119.97019 * 0.02562 * 18 17 14 36 36 H 1.07999 * 120.03146 * 180.25458 * 19 18 17 37 37 H 1.08002 * 126.14475 * 359.97197 * 22 21 20 38 38 H 1.08004 * 126.03520 * 180.12080 * 23 22 21 39 39 H 1.07993 * 125.88139 * 179.75822 * 24 23 22 40 40 H 1.08002 * 120.02821 * 180.02562 * 26 20 19 41 41 H 1.07998 * 119.96884 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 0.8380 5 6 3.5412 1.4445 0.1328 6 1 4.1511 1.8874 -0.6406 7 6 4.1358 0.8811 1.2418 8 7 5.4460 0.8824 1.3575 9 14 3.0809 0.1146 2.5794 10 1 2.8617 -1.3221 2.2745 11 1 3.7704 0.2434 3.8882 12 1 1.7719 0.8134 2.6386 13 7 1.6600 2.0948 -1.2555 14 16 1.2447 3.6977 -1.2632 15 8 0.2851 3.8686 -0.2291 16 8 0.9953 4.0412 -2.6193 17 6 2.6714 4.6085 -0.7736 18 6 2.8866 4.8874 0.5636 19 6 4.0066 5.5970 0.9509 20 6 4.9109 6.0399 -0.0049 21 7 6.0453 6.7656 0.3845 22 6 6.3759 7.1067 1.6505 23 6 7.5392 7.7962 1.6006 24 6 7.9282 7.8885 0.2598 25 7 7.0338 7.2713 -0.4696 26 6 4.6892 5.7628 -1.3472 27 6 3.5703 5.0483 -1.7279 28 1 -0.3633 -1.0248 -0.0764 29 1 -0.3633 0.4462 0.9257 30 1 -0.3633 0.5786 -0.8493 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 5.8643 0.4863 2.1379 34 1 1.6517 1.5876 -2.0825 35 1 2.1805 4.5464 1.3062 36 1 4.1763 5.8109 1.9958 37 1 5.8138 6.8693 2.5417 38 1 8.0708 8.2075 2.4461 39 1 8.8142 8.3833 -0.1096 40 1 5.3912 6.1058 -2.0929 41 1 3.3972 4.8329 -2.7719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259373271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = 17.943553 kcal Electronic energy + Delta-G solvation = -27022.858778 eV Core-core repulsion = 23224.102911 eV Total energy + Delta-G solvation = -3798.755867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.56503 -40.06720 -38.40835 -37.85446 -36.91374 -34.71636 -34.24611 -32.56917 -32.43362 -31.18329 -30.23249 -29.02823 -24.98814 -24.48209 -24.35906 -22.30479 -22.00231 -21.61821 -20.54678 -19.55424 -19.14009 -18.53348 -18.25480 -17.33184 -16.69707 -16.35222 -16.30836 -16.03055 -15.64518 -15.38317 -15.18459 -14.76953 -14.67162 -14.52264 -14.06899 -14.04223 -13.91333 -13.72683 -13.68125 -13.26237 -13.15940 -13.09891 -12.83401 -12.52486 -12.47006 -12.24039 -12.05331 -11.78570 -11.65045 -11.62353 -11.57389 -11.24485 -10.67586 -10.29096 -10.17940 -10.07222 -9.32289 -8.24681 -6.29276 -0.67454 -0.38370 0.19943 0.96601 1.26188 1.33959 1.41572 1.48600 1.80307 2.08560 2.33895 2.44320 2.85162 3.09488 3.29706 3.41956 3.65747 3.85697 3.90366 4.14398 4.21678 4.26720 4.32074 4.38298 4.51147 4.55773 4.66812 4.67725 4.80182 4.81116 4.95829 4.97872 5.01140 5.06636 5.11364 5.19130 5.38902 5.50295 5.56689 5.60492 5.66154 6.03418 6.26688 6.40896 6.54915 6.78183 7.36081 8.90522 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.004758 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.260912 B = 5883.142268 C = 7454.411779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.136 4.136 3 C 0.248 3.752 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.049 0.951 7 C 0.029 3.971 8 N -0.938 5.938 9 Si 0.920 3.080 10 H -0.265 1.265 11 H -0.302 1.302 12 H -0.240 1.240 13 N -1.090 6.090 14 S 2.717 3.283 15 O -0.982 6.982 16 O -0.986 6.986 17 C -0.683 4.683 18 C 0.014 3.986 19 C -0.163 4.163 20 C 0.204 3.796 21 N -0.344 5.344 22 C 0.040 3.960 23 C -0.256 4.256 24 C 0.060 3.940 25 N -0.334 5.334 26 C -0.158 4.158 27 C 0.000 4.000 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.263 0.737 34 H 0.421 0.579 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.203 0.797 38 H 0.189 0.811 39 H 0.226 0.774 40 H 0.145 0.855 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 9.764 0.810 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.141 3.859 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.067 0.933 7 C -0.170 4.170 8 N -0.578 5.578 9 Si 0.747 3.253 10 H -0.191 1.191 11 H -0.230 1.230 12 H -0.163 1.163 13 N -0.851 5.851 14 S 2.807 3.193 15 O -0.972 6.972 16 O -0.977 6.977 17 C -0.771 4.771 18 C -0.006 4.006 19 C -0.185 4.185 20 C 0.110 3.890 21 N -0.120 5.120 22 C -0.100 4.100 23 C -0.284 4.284 24 C -0.128 4.128 25 N -0.152 5.152 26 C -0.178 4.178 27 C -0.020 4.020 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.257 0.743 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.220 0.780 38 H 0.206 0.794 39 H 0.242 0.758 40 H 0.163 0.837 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.684 9.812 -0.311 10.177 hybrid contribution 1.331 -0.511 1.358 1.969 sum -1.353 9.300 1.047 9.456 Atomic orbital electron populations 1.21858 0.94855 1.02274 1.02132 1.22098 0.96250 0.97321 1.01811 1.18860 0.93302 0.91754 0.81975 0.93536 1.21542 0.91086 1.37595 1.05700 0.93309 1.25563 0.95450 0.96116 0.99898 1.70036 1.10774 1.46668 1.30276 0.86296 0.80362 0.80257 0.78381 1.19111 1.22974 1.16310 1.55073 1.85926 1.26973 1.17103 1.00879 0.73503 0.72512 0.72375 1.93524 1.58084 1.86052 1.59554 1.93517 1.85165 1.83564 1.35422 1.30840 1.23929 1.20140 1.02181 1.20843 0.95338 0.90157 0.94217 1.21070 0.94777 1.02575 1.00043 1.17960 0.84578 0.91665 0.94810 1.46083 1.17851 1.41957 1.06085 1.23388 0.99073 0.98730 0.88826 1.22089 0.98456 1.09075 0.98739 1.24847 0.98646 0.96446 0.92814 1.77427 1.00642 1.18196 1.18931 1.20988 0.99589 1.02731 0.94535 1.20898 0.90473 0.90827 0.99764 0.91234 0.93285 0.91822 0.90668 0.93375 0.92756 0.74290 0.82899 0.82113 0.78021 0.79406 0.75788 0.83729 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 9.85 71.98 0.71 -3.91 16 2 C -0.14 -4.96 5.03 30.59 0.15 -4.80 16 3 C 0.25 10.08 1.86 44.25 0.08 10.16 16 4 H 0.05 1.95 6.60 -2.39 -0.02 1.93 16 5 C -0.52 -25.78 9.42 25.60 0.24 -25.54 16 6 H 0.05 2.72 8.06 -2.91 -0.02 2.69 16 7 C 0.03 1.51 5.45 84.65 0.46 1.97 16 8 N -0.94 -54.18 13.96 21.45 0.30 -53.88 16 9 Si 0.92 40.34 24.41 68.60 1.67 42.01 16 10 H -0.26 -11.14 6.83 99.48 0.68 -10.46 16 11 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.24 -9.63 6.53 99.48 0.65 -8.98 16 13 N -1.09 -38.32 4.85 -172.52 -0.84 -39.15 16 14 S 2.72 95.83 5.71 -56.49 -0.32 95.51 16 15 O -0.98 -37.66 16.66 -128.00 -2.13 -39.79 16 16 O -0.99 -36.15 17.28 -128.00 -2.21 -38.36 16 17 C -0.68 -24.33 5.93 22.29 0.13 -24.20 16 18 C 0.01 0.50 9.51 22.25 0.21 0.71 16 19 C -0.16 -5.24 9.46 22.39 0.21 -5.03 16 20 C 0.20 6.93 6.69 38.09 0.25 7.18 16 21 N -0.34 -10.74 3.80 -187.76 -0.71 -11.45 16 22 C 0.04 0.97 10.80 83.50 0.90 1.87 16 23 C -0.26 -5.08 10.80 22.00 0.24 -4.84 16 24 C 0.06 1.31 12.03 85.24 1.03 2.34 16 25 N -0.33 -10.18 11.87 -56.97 -0.68 -10.86 16 26 C -0.16 -5.41 9.66 22.38 0.22 -5.19 16 27 C 0.00 0.01 9.51 22.25 0.21 0.22 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.78 7.65 -2.39 -0.02 1.76 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.05 1.88 3.21 -2.38 -0.01 1.87 16 33 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.42 12.70 8.85 -96.74 -0.86 11.84 16 35 H 0.15 4.92 7.60 -2.91 -0.02 4.89 16 36 H 0.16 4.03 6.74 -2.91 -0.02 4.01 16 37 H 0.20 3.57 7.04 -2.91 -0.02 3.55 16 38 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.23 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.14 4.67 7.70 -2.91 -0.02 4.65 16 41 H 0.16 4.69 7.61 -2.91 -0.02 4.67 16 Total: -1.00 -71.01 354.90 0.26 -70.74 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.13 Total: 34.28 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 5.05 Total: -49.06 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -1.93 Total: -115.33 kcal Atomic # 8 Polarization: -73.81 SS G_CDS: -4.34 Total: -78.15 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.67 Total: 42.01 kcal Atomic # 16 Polarization: 95.83 SS G_CDS: -0.32 Total: 95.51 kcal Total: -71.01 0.26 -70.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259373271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.688 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds