Wall clock time and date at job start Tue Mar 31 2020 19:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 N 1.46505 * 109.47212 * 295.00240 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46951 * 89.99797 * 10 8 6 12 12 H 1.48500 * 109.47313 * 210.00112 * 10 8 6 13 13 H 1.48501 * 109.46991 * 330.00153 * 10 8 6 14 14 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 15 15 N 1.46501 * 109.47260 * 64.99377 * 14 2 1 16 16 C 1.34781 * 120.00018 * 179.97438 * 15 14 2 17 17 O 1.21494 * 119.99660 * 0.02562 * 16 15 14 18 18 C 1.48346 * 120.00252 * 180.02562 * 16 15 14 19 19 C 1.41698 * 126.81250 * 179.71485 * 18 16 15 20 20 C 1.37162 * 103.79459 * 179.86154 * 19 18 16 21 21 C 1.47028 * 126.85588 * 180.09560 * 20 19 18 22 22 C 1.36201 * 125.33548 * 180.02562 * 21 20 19 23 23 C 1.37710 * 114.44701 * 179.78920 * 22 21 20 24 24 C 1.33737 * 115.19021 * 0.49706 * 23 22 21 25 25 S 1.75827 * 109.95863 * 359.73093 * 24 23 22 26 26 O 1.34568 * 106.28312 * 0.39583 * 20 19 18 27 27 N 1.20864 * 111.69625 * 359.73001 * 26 20 19 28 28 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 29 29 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 30 30 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 32 32 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 33 33 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 34 34 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47698 * 184.99641 * 14 2 1 36 36 H 1.09009 * 109.47010 * 304.99646 * 14 2 1 37 37 H 0.96994 * 120.00443 * 0.02562 * 15 14 2 38 38 H 1.07995 * 128.10487 * 359.97438 * 19 18 16 39 39 H 1.08000 * 122.77651 * 359.97056 * 22 21 20 40 40 H 1.08000 * 122.40806 * 180.22707 * 23 22 21 41 41 H 1.07995 * 125.01977 * 179.75929 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 0.0355 2.4424 6 6 2.0011 -0.4206 3.6856 7 1 2.5622 -1.3380 3.7865 8 6 1.6334 0.2959 4.8161 9 7 0.9492 1.4136 4.6932 10 14 2.1096 -0.3259 6.5120 11 1 3.4318 0.2338 6.8911 12 1 1.0884 0.1029 7.5012 13 1 2.1872 -1.8087 6.4917 14 6 2.0401 -0.7211 -1.2492 15 7 1.6524 0.0354 -2.4423 16 6 1.9965 -0.4130 -3.6659 17 8 2.6277 -1.4449 -3.7793 18 6 1.6044 0.3533 -4.8741 19 6 1.8924 0.0207 -6.2210 20 6 1.3138 1.0358 -6.9395 21 6 1.3082 1.1893 -8.4017 22 6 0.7231 2.2125 -9.0841 23 6 0.8581 2.1358 -10.4525 24 6 1.5300 1.0692 -10.8992 25 16 2.0496 0.0764 -9.5443 26 8 0.7582 1.8666 -6.0385 27 7 0.9273 1.4765 -4.9071 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1264 -0.7993 1.2056 32 1 1.6054 -1.7197 1.2951 33 1 1.1482 0.8591 2.3517 34 1 0.6919 1.9142 5.4831 35 1 3.1264 -0.7993 -1.2056 36 1 1.6055 -1.7198 -1.2951 37 1 1.1488 0.8594 -2.3518 38 1 2.4379 -0.8332 -6.5946 39 1 0.1992 3.0190 -8.5926 40 1 0.4470 2.8810 -11.1173 41 1 1.7250 0.8504 -11.9386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267996856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:43 Heat of formation + Delta-G solvation = 67.376358 kcal Electronic energy + Delta-G solvation = -24429.363288 eV Core-core repulsion = 20632.750988 eV Total energy + Delta-G solvation = -3796.612299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.41705 -39.80812 -38.30295 -36.91899 -34.53799 -34.41896 -33.31989 -32.39924 -30.06724 -29.18629 -26.97708 -25.80151 -25.16344 -24.19462 -23.20164 -22.32585 -20.99881 -20.29582 -19.42850 -18.90943 -18.20357 -17.30802 -17.08960 -16.72556 -16.11269 -15.81947 -15.52157 -14.77691 -14.51384 -14.33135 -14.02380 -13.83050 -13.77560 -13.63169 -13.22075 -13.06361 -12.90630 -12.69316 -12.36429 -12.08405 -11.96027 -11.44191 -11.07708 -10.94251 -10.87777 -10.81496 -10.75049 -10.63008 -10.52694 -10.33708 -10.01329 -9.68309 -9.20057 -9.12499 -8.87611 -8.83070 -6.92281 -5.76631 -3.05292 -0.21881 0.73326 0.87387 1.30109 1.40588 2.26199 2.55315 2.75066 2.93405 3.44379 3.49500 3.51164 3.58687 3.95149 4.41370 4.47964 4.59150 4.71368 4.76803 4.90252 4.97362 5.02687 5.17671 5.34056 5.36295 5.42591 5.57769 5.63775 5.76855 5.77427 5.91219 5.93064 6.07094 6.20081 6.33062 6.39728 6.64392 6.75823 6.84906 7.20826 7.57471 7.70654 7.89802 8.42249 9.53594 10.10680 10.45517 11.46286 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.042410 B = 0.001609 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.059260 B =17395.121497 C =17894.112771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.125 3.875 15 N -0.706 5.706 16 C 0.595 3.405 17 O -0.522 6.522 18 C -0.014 4.014 19 C -0.167 4.167 20 C 0.040 3.960 21 C -0.145 4.145 22 C -0.097 4.097 23 C -0.136 4.136 24 C -0.207 4.207 25 S 0.177 5.823 26 O 0.137 5.863 27 N -0.325 5.325 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.408 0.592 38 H 0.184 0.816 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 0.994 -35.629 35.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.002 3.998 15 N -0.357 5.357 16 C 0.378 3.622 17 O -0.397 6.397 18 C -0.172 4.172 19 C -0.191 4.191 20 C -0.024 4.024 21 C -0.263 4.263 22 C -0.130 4.130 23 C -0.166 4.166 24 C -0.343 4.343 25 S 0.442 5.558 26 O 0.059 5.941 27 N -0.024 5.024 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.243 0.757 38 H 0.201 0.799 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.151 -0.512 -34.388 34.392 hybrid contribution -0.610 1.203 0.402 1.408 sum -0.458 0.692 -33.985 33.995 Atomic orbital electron populations 1.21806 0.94547 1.02019 1.01647 1.21570 0.96858 1.00615 0.94002 0.90372 1.20569 0.96643 0.94210 0.85286 1.42332 1.66929 1.27703 1.00551 1.19241 1.28720 1.05493 0.83646 0.91123 1.24734 1.00974 0.97409 0.97864 1.69656 1.43464 1.16645 1.28502 0.86176 0.77580 0.78016 0.84343 1.21726 1.21778 1.20750 1.21561 1.00533 0.95329 0.82358 1.45952 1.56424 1.27967 1.05378 1.16815 0.79866 0.84044 0.81452 1.90816 1.39696 1.23170 1.85972 1.23356 1.02501 0.94980 0.96399 1.22616 1.04495 1.01556 0.90420 1.21251 0.99556 0.91892 0.89732 1.21797 1.10658 1.02896 0.90936 1.20771 0.99920 0.98538 0.93745 1.20059 1.01911 0.99537 0.95101 1.26005 1.05697 0.99606 1.03015 1.84379 1.53090 1.23873 0.94477 1.84924 1.56988 1.42060 1.10151 1.74188 1.15928 1.12889 0.99436 0.90972 0.93902 0.92722 0.96048 0.95905 0.78184 0.93526 0.90757 0.90757 0.75676 0.79893 0.83076 0.83381 0.81040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.94 37.16 0.33 -1.85 16 2 C -0.11 -1.75 2.46 -90.62 -0.22 -1.98 16 3 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 4 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 5 N -0.73 -18.42 5.33 -59.91 -0.32 -18.74 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 10 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 15 N -0.71 -9.21 5.28 -61.09 -0.32 -9.54 16 16 C 0.60 8.33 7.85 -12.10 -0.09 8.24 16 17 O -0.52 -8.62 16.94 5.37 0.09 -8.53 16 18 C -0.01 -0.17 7.17 -82.66 -0.59 -0.77 16 19 C -0.17 -1.70 10.78 -38.65 -0.42 -2.12 16 20 C 0.04 0.37 7.28 -36.41 -0.26 0.10 16 21 C -0.14 -1.04 6.45 -36.75 -0.24 -1.28 16 22 C -0.10 -0.56 10.17 -40.51 -0.41 -0.97 16 23 C -0.14 -0.59 10.15 -41.35 -0.42 -1.01 16 24 C -0.21 -0.84 11.21 29.15 0.33 -0.51 16 25 S 0.18 0.97 23.11 -107.50 -2.48 -1.51 16 26 O 0.14 1.40 11.21 15.76 0.18 1.57 16 27 N -0.33 -3.82 11.81 33.36 0.39 -3.43 16 28 H 0.07 1.28 7.18 -51.93 -0.37 0.91 16 29 H 0.04 0.56 7.18 -51.93 -0.37 0.18 16 30 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 10.09 6.85 -40.82 -0.28 9.81 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.41 4.86 7.41 -40.82 -0.30 4.55 16 38 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 41 H 0.17 0.28 8.06 -52.49 -0.42 -0.14 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -32.89 372.12 -8.55 -41.44 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.10 Total: 7.77 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.29 Total: -4.63 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.48 Total: -59.26 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.27 Total: -6.96 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.48 Total: -1.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.89 -8.55 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267996856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.819 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds