Wall clock time and date at job start Tue Mar 31 2020 19:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46968 * 2 1 4 4 C 1.53004 * 109.46974 * 239.99991 * 2 1 3 5 5 N 1.46502 * 109.46736 * 184.99882 * 4 2 1 6 6 C 1.36938 * 119.99691 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99717 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00037 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99799 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47402 * 89.99937 * 10 8 6 12 12 H 1.48502 * 109.47295 * 210.00307 * 10 8 6 13 13 H 1.48508 * 109.47240 * 329.99879 * 10 8 6 14 14 N 1.46501 * 109.46787 * 119.99958 * 2 1 3 15 15 C 1.46496 * 119.99960 * 60.00419 * 14 2 1 16 16 C 1.34777 * 119.99527 * 239.99771 * 14 2 1 17 17 O 1.21602 * 120.00289 * 359.97438 * 16 14 2 18 18 C 1.47303 * 119.99459 * 179.97438 * 16 14 2 19 19 C 1.34219 * 124.79152 * 171.25068 * 18 16 14 20 20 C 1.39562 * 115.53446 * 180.16536 * 19 18 16 21 21 C 1.47750 * 129.59675 * 179.85215 * 20 19 18 22 22 C 1.34059 * 119.55836 * 179.70062 * 21 20 19 23 23 N 1.36562 * 121.42517 * 359.97438 * 22 21 20 24 24 H 0.97003 * 119.16042 * 179.97438 * 23 22 21 25 25 C 1.34300 * 121.67628 * 0.02562 * 23 22 21 26 26 O 1.21953 * 119.69273 * 180.02562 * 25 23 22 27 27 C 1.39391 * 112.90113 * 359.56344 * 20 19 18 28 28 S 1.75554 * 124.79396 * 350.95695 * 18 16 14 29 29 H 1.09003 * 109.46919 * 300.00291 * 1 2 3 30 30 H 1.09005 * 109.46950 * 60.00100 * 1 2 3 31 31 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46754 * 304.99642 * 4 2 1 33 33 H 1.08993 * 109.46982 * 65.00458 * 4 2 1 34 34 H 0.97000 * 119.99971 * 0.02562 * 5 4 2 35 35 H 0.97001 * 119.99799 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46642 * 263.43351 * 15 14 2 37 37 H 1.09000 * 109.47155 * 23.43132 * 15 14 2 38 38 H 1.08999 * 109.46999 * 143.43753 * 15 14 2 39 39 H 1.08009 * 122.23304 * 359.97438 * 19 18 16 40 40 H 1.08000 * 120.22601 * 359.67605 * 21 20 19 41 41 H 1.08005 * 119.29073 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1838 -1.4388 -2.2067 7 1 3.6468 -1.8440 -3.0516 8 6 5.5672 -1.5389 -2.1508 9 7 6.2217 -1.0455 -1.1210 10 14 6.5000 -2.3737 -3.5373 11 1 6.8628 -1.3666 -4.5666 12 1 7.7351 -2.9972 -2.9979 13 1 5.6437 -3.4211 -4.1497 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0874 1.1285 1.8906 18 6 3.2836 -0.7298 3.2864 19 6 4.1893 -0.2315 4.1424 20 6 4.5181 -1.0572 5.2185 21 6 5.4654 -0.8253 6.3284 22 6 5.6230 -1.7658 7.2707 23 7 4.9251 -2.9389 7.2296 24 1 5.0650 -3.5968 7.9285 25 6 4.0507 -3.2052 6.2456 26 8 3.4465 -4.2645 6.2448 27 6 3.8229 -2.2653 5.2073 28 16 2.7606 -2.3228 3.8069 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.9824 -0.4628 -0.4316 35 1 7.1883 -1.1158 -1.0818 36 1 0.8046 -2.1453 2.0959 37 1 1.4159 -2.5669 0.4783 38 1 2.5093 -2.6108 1.8822 39 1 4.6363 0.7423 4.0059 40 1 6.0274 0.0954 6.3801 41 1 6.3169 -1.5919 8.0799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271020975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:05 Heat of formation + Delta-G solvation = 6.315119 kcal Electronic energy + Delta-G solvation = -26464.185793 eV Core-core repulsion = 22664.925679 eV Total energy + Delta-G solvation = -3799.260113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04442 -39.90295 -37.62220 -36.60379 -35.88313 -34.10533 -32.29776 -31.12900 -30.16866 -29.61960 -27.02115 -25.87209 -25.43817 -23.85235 -22.68666 -21.86996 -20.48816 -19.47716 -18.80830 -18.04861 -17.11700 -17.03694 -16.61155 -15.89455 -15.73803 -15.50993 -15.29523 -14.71915 -14.53584 -14.09958 -13.68463 -13.55934 -13.36498 -13.09455 -12.97273 -12.74254 -12.47183 -12.33457 -12.26624 -12.12819 -12.01382 -11.91837 -11.53815 -10.86061 -10.76911 -10.64650 -10.51946 -10.33859 -10.05730 -9.79997 -9.70304 -9.43497 -8.96342 -8.87352 -8.40856 -7.78960 -6.90896 -5.73057 -3.03007 0.07923 1.28363 1.30487 1.82006 2.11341 2.90308 3.01699 3.26796 3.44549 3.49040 3.49521 3.51178 4.25762 4.45440 4.58939 4.64468 4.86972 4.96809 5.12316 5.18775 5.30005 5.44047 5.48982 5.53437 5.60470 5.65607 5.76616 5.83335 5.93824 5.98433 6.07468 6.14205 6.15308 6.31505 6.43634 6.49928 6.65384 6.76098 6.86311 7.50258 7.70538 7.78712 8.29616 8.44099 9.55755 10.13281 10.48360 11.48960 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.003837 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.983202 B = 7294.954467 C = 8454.956290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.104 0.896 4 C 0.143 3.857 5 N -0.729 5.729 6 C -0.243 4.243 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.928 5.928 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.588 5.588 15 C 0.064 3.936 16 C 0.589 3.411 17 O -0.519 6.519 18 C -0.205 4.205 19 C -0.067 4.067 20 C -0.005 4.005 21 C -0.169 4.169 22 C 0.099 3.901 23 N -0.620 5.620 24 H 0.416 0.584 25 C 0.571 3.429 26 O -0.545 6.545 27 C -0.306 4.306 28 S 0.273 5.727 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.032 0.968 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 -0.390 17.748 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.122 0.878 4 C 0.014 3.986 5 N -0.373 5.373 6 C -0.374 4.374 7 H 0.088 0.912 8 C -0.207 4.207 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.320 5.320 15 C -0.082 4.082 16 C 0.375 3.625 17 O -0.396 6.396 18 C -0.327 4.327 19 C -0.099 4.099 20 C -0.022 4.022 21 C -0.194 4.194 22 C -0.025 4.025 23 N -0.257 5.257 24 H 0.254 0.746 25 C 0.366 3.634 26 O -0.427 6.427 27 C -0.425 4.425 28 S 0.545 5.455 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.176 0.824 40 H 0.168 0.832 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.528 -1.494 16.750 18.855 hybrid contribution 2.138 0.346 0.343 2.193 sum -6.390 -1.148 17.094 18.285 Atomic orbital electron populations 1.22075 0.94719 1.02291 1.02324 1.21507 0.93523 0.98588 0.83967 0.87751 1.21030 0.87233 0.96815 0.93528 1.42309 0.99615 1.70207 1.25209 1.19194 0.89431 1.29633 0.99152 0.91227 1.24747 0.96456 1.01567 0.97975 1.69686 1.07173 1.50658 1.30085 0.86218 0.79556 0.79008 0.81547 1.21719 1.21824 1.20790 1.47514 1.50042 1.11841 1.22561 1.21957 1.00376 0.82382 1.03447 1.17021 0.78261 0.85943 0.81292 1.90809 1.57142 1.15892 1.75758 1.24362 1.06111 1.00389 1.01819 1.20006 0.96494 1.01453 0.91962 1.19252 0.95798 0.92021 0.95089 1.21385 1.02445 1.01149 0.94423 1.21383 0.95794 0.85518 0.99788 1.43005 1.37963 1.18551 1.26204 0.74611 1.15814 0.79713 0.86415 0.81445 1.90966 1.49126 1.25603 1.76976 1.24976 1.11615 1.00359 1.05544 1.84694 1.38591 1.11288 1.10916 0.92464 0.91096 0.92240 0.96062 0.95073 0.77969 0.93538 0.91860 0.88092 0.90701 0.82385 0.83166 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.19 37.16 0.34 -1.55 16 2 C 0.13 2.11 2.79 -67.93 -0.19 1.92 16 3 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 4 C 0.14 2.80 5.52 -4.04 -0.02 2.78 16 5 N -0.73 -18.68 5.43 -59.91 -0.33 -19.01 16 6 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 10 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 N -0.59 -9.80 2.24 -175.25 -0.39 -10.19 16 15 C 0.06 0.89 7.91 59.84 0.47 1.36 16 16 C 0.59 10.88 7.36 -12.57 -0.09 10.78 16 17 O -0.52 -11.08 16.10 5.28 0.08 -11.00 16 18 C -0.21 -3.33 6.15 -37.31 -0.23 -3.56 16 19 C -0.07 -1.00 9.82 -40.50 -0.40 -1.39 16 20 C -0.01 -0.07 6.08 -105.09 -0.64 -0.71 16 21 C -0.17 -1.57 10.29 -37.17 -0.38 -1.95 16 22 C 0.10 0.70 11.11 -16.92 -0.19 0.51 16 23 N -0.62 -5.71 5.23 -14.85 -0.08 -5.79 16 24 H 0.42 2.64 8.87 -40.82 -0.36 2.28 16 25 C 0.57 7.95 7.71 -15.08 -0.12 7.83 16 26 O -0.55 -9.19 17.89 4.96 0.09 -9.10 16 27 C -0.31 -4.42 6.48 -37.76 -0.24 -4.67 16 28 S 0.27 3.88 17.97 -107.50 -1.93 1.95 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16 32 H 0.02 0.40 6.87 -51.93 -0.36 0.05 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.39 10.78 7.06 -40.82 -0.29 10.49 16 35 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.06 0.68 7.72 -51.93 -0.40 0.28 16 37 H 0.10 1.36 6.54 -51.93 -0.34 1.02 16 38 H 0.08 1.12 4.63 -23.09 -0.11 1.01 16 39 H 0.16 2.25 8.00 -52.48 -0.42 1.83 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.17 0.40 8.06 -52.48 -0.42 -0.02 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -37.37 355.67 -8.12 -45.49 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.69 Total: 8.68 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.93 Total: 3.94 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.07 Total: -62.97 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.17 Total: -20.10 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.93 Total: 1.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.37 -8.12 -45.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271020975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.802 kcal (2) G-P(sol) polarization free energy of solvation -37.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds