Wall clock time and date at job start Tue Mar 31 2020 19:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46968 * 2 1 4 4 C 1.53004 * 109.46974 * 239.99991 * 2 1 3 5 5 N 1.46502 * 109.46736 * 184.99882 * 4 2 1 6 6 C 1.36938 * 119.99691 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99717 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00037 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99799 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47402 * 89.99937 * 10 8 6 12 12 H 1.48502 * 109.47295 * 210.00307 * 10 8 6 13 13 H 1.48508 * 109.47240 * 329.99879 * 10 8 6 14 14 N 1.46501 * 109.46787 * 119.99958 * 2 1 3 15 15 C 1.46496 * 119.99960 * 60.00419 * 14 2 1 16 16 C 1.34777 * 119.99527 * 239.99771 * 14 2 1 17 17 O 1.21602 * 120.00289 * 359.97438 * 16 14 2 18 18 C 1.47303 * 119.99459 * 179.97438 * 16 14 2 19 19 C 1.34219 * 124.79152 * 171.25068 * 18 16 14 20 20 C 1.39562 * 115.53446 * 180.16536 * 19 18 16 21 21 C 1.47750 * 129.59675 * 179.85215 * 20 19 18 22 22 C 1.34059 * 119.55836 * 179.70062 * 21 20 19 23 23 N 1.36562 * 121.42517 * 359.97438 * 22 21 20 24 24 H 0.97003 * 119.16042 * 179.97438 * 23 22 21 25 25 C 1.34300 * 121.67628 * 0.02562 * 23 22 21 26 26 O 1.21953 * 119.69273 * 180.02562 * 25 23 22 27 27 C 1.39391 * 112.90113 * 359.56344 * 20 19 18 28 28 S 1.75554 * 124.79396 * 350.95695 * 18 16 14 29 29 H 1.09003 * 109.46919 * 300.00291 * 1 2 3 30 30 H 1.09005 * 109.46950 * 60.00100 * 1 2 3 31 31 H 1.08997 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46754 * 304.99642 * 4 2 1 33 33 H 1.08993 * 109.46982 * 65.00458 * 4 2 1 34 34 H 0.97000 * 119.99971 * 0.02562 * 5 4 2 35 35 H 0.97001 * 119.99799 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46642 * 263.43351 * 15 14 2 37 37 H 1.09000 * 109.47155 * 23.43132 * 15 14 2 38 38 H 1.08999 * 109.46999 * 143.43753 * 15 14 2 39 39 H 1.08009 * 122.23304 * 359.97438 * 19 18 16 40 40 H 1.08000 * 120.22601 * 359.67605 * 21 20 19 41 41 H 1.08005 * 119.29073 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1838 -1.4388 -2.2067 7 1 3.6468 -1.8440 -3.0516 8 6 5.5672 -1.5389 -2.1508 9 7 6.2217 -1.0455 -1.1210 10 14 6.5000 -2.3737 -3.5373 11 1 6.8628 -1.3666 -4.5666 12 1 7.7351 -2.9972 -2.9979 13 1 5.6437 -3.4211 -4.1497 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0874 1.1285 1.8906 18 6 3.2836 -0.7298 3.2864 19 6 4.1893 -0.2315 4.1424 20 6 4.5181 -1.0572 5.2185 21 6 5.4654 -0.8253 6.3284 22 6 5.6230 -1.7658 7.2707 23 7 4.9251 -2.9389 7.2296 24 1 5.0650 -3.5968 7.9285 25 6 4.0507 -3.2052 6.2456 26 8 3.4465 -4.2645 6.2448 27 6 3.8229 -2.2653 5.2073 28 16 2.7606 -2.3228 3.8069 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.9824 -0.4628 -0.4316 35 1 7.1883 -1.1158 -1.0818 36 1 0.8046 -2.1453 2.0959 37 1 1.4159 -2.5669 0.4783 38 1 2.5093 -2.6108 1.8822 39 1 4.6363 0.7423 4.0059 40 1 6.0274 0.0954 6.3801 41 1 6.3169 -1.5919 8.0799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271020975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:04 Heat of formation + Delta-G solvation = -21.182565 kcal Electronic energy + Delta-G solvation = -26465.378182 eV Core-core repulsion = 22664.925679 eV Total energy + Delta-G solvation = -3800.452503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99004 -41.26516 -38.74164 -37.92942 -36.97913 -35.93695 -33.85087 -32.35358 -31.68757 -30.64182 -28.22783 -27.42578 -26.74954 -24.83530 -24.42970 -23.12242 -21.66459 -20.68974 -19.78800 -19.25039 -19.12930 -18.18112 -17.56559 -17.11423 -16.87275 -16.84184 -16.51957 -16.47739 -15.58741 -15.42864 -15.24111 -15.10545 -14.73974 -14.33703 -14.06451 -13.87401 -13.71625 -13.66726 -13.52242 -13.32039 -13.05794 -13.00330 -12.94976 -12.80382 -12.53008 -12.15694 -11.85932 -11.76163 -11.71148 -11.40242 -11.23454 -10.95571 -10.41807 -10.15568 -9.67946 -9.00740 -8.71870 -7.93908 -5.24010 -1.03011 0.18702 0.43789 0.74759 1.02984 1.45201 1.47457 1.55588 1.71962 2.01236 2.09232 2.50019 2.54963 3.20122 3.39344 3.59496 3.69260 3.83794 3.88247 3.95254 4.07117 4.23650 4.28191 4.38131 4.49143 4.53792 4.62291 4.67554 4.82852 4.86870 4.95087 4.97043 5.01694 5.10801 5.24175 5.29981 5.46532 5.52100 5.77815 5.90335 6.16750 6.25984 6.86870 6.91664 7.32331 8.08272 8.30936 9.29291 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.003837 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.983202 B = 7294.954467 C = 8454.956290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.130 3.870 3 H 0.076 0.924 4 C 0.139 3.861 5 N -0.744 5.744 6 C -0.243 4.243 7 H 0.081 0.919 8 C -0.076 4.076 9 N -0.970 5.970 10 Si 0.974 3.026 11 H -0.288 1.288 12 H -0.298 1.298 13 H -0.266 1.266 14 N -0.586 5.586 15 C 0.059 3.941 16 C 0.579 3.421 17 O -0.563 6.563 18 C -0.230 4.230 19 C -0.072 4.072 20 C -0.003 4.003 21 C -0.192 4.192 22 C 0.129 3.871 23 N -0.603 5.603 24 H 0.433 0.567 25 C 0.562 3.438 26 O -0.586 6.586 27 C -0.336 4.336 28 S 0.281 5.719 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.371 0.629 35 H 0.249 0.751 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.157 0.843 40 H 0.179 0.821 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 -1.322 19.043 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.094 0.906 4 C 0.012 3.988 5 N -0.387 5.387 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.268 4.268 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.216 1.216 12 H -0.225 1.225 13 H -0.190 1.190 14 N -0.317 5.317 15 C -0.086 4.086 16 C 0.367 3.633 17 O -0.444 6.444 18 C -0.351 4.351 19 C -0.106 4.106 20 C -0.019 4.019 21 C -0.216 4.216 22 C 0.006 3.994 23 N -0.240 5.240 24 H 0.274 0.726 25 C 0.358 3.642 26 O -0.471 6.471 27 C -0.455 4.455 28 S 0.554 5.446 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.174 0.826 40 H 0.196 0.804 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -8.753 -2.459 18.042 20.203 hybrid contribution 2.205 0.670 0.041 2.305 sum -6.547 -1.790 18.083 19.314 Atomic orbital electron populations 1.22002 0.90642 1.03990 1.03522 1.21451 0.96460 0.96565 0.82808 0.90617 1.21264 0.84088 0.98120 0.95279 1.42545 1.02060 1.69904 1.24163 1.19656 0.89923 1.28349 0.99576 0.90161 1.25593 0.97595 1.03130 1.00506 1.69873 1.06880 1.52887 1.32387 0.85139 0.77918 0.78164 0.78519 1.21568 1.22499 1.19017 1.47639 1.49298 1.12836 1.21952 1.22172 1.01291 0.80617 1.04484 1.17418 0.78032 0.85720 0.82144 1.90762 1.58902 1.17725 1.77037 1.24291 1.07370 1.01799 1.01655 1.20215 0.96210 1.01710 0.92459 1.19581 0.95985 0.90904 0.95404 1.21796 1.02604 1.03385 0.93822 1.22305 0.94156 0.83131 0.99838 1.42996 1.36274 1.19629 1.25103 0.72596 1.15868 0.80399 0.85774 0.82200 1.90937 1.51089 1.26980 1.78140 1.25168 1.12673 1.01398 1.06242 1.84405 1.39064 1.09811 1.11369 0.91671 0.89534 0.90226 0.94152 0.94476 0.79786 0.94253 0.88451 0.87488 0.91757 0.82579 0.80372 0.75670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 2 C 0.13 4.35 2.79 44.99 0.13 4.47 16 3 H 0.08 2.98 6.90 -2.39 -0.02 2.96 16 4 C 0.14 5.43 5.52 86.38 0.48 5.91 16 5 N -0.74 -38.84 5.43 -343.45 -1.87 -40.71 16 6 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 7 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 8 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 9 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 10 Si 0.97 47.08 29.55 68.60 2.03 49.10 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 N -0.59 -19.97 2.24 -826.62 -1.85 -21.83 16 15 C 0.06 1.61 7.91 127.77 1.01 2.62 16 16 C 0.58 22.58 7.36 86.63 0.64 23.21 16 17 O -0.56 -25.75 16.10 -4.04 -0.06 -25.82 16 18 C -0.23 -7.83 6.15 23.74 0.15 -7.68 16 19 C -0.07 -2.25 9.82 21.67 0.21 -2.04 16 20 C 0.00 -0.07 6.08 -20.17 -0.12 -0.20 16 21 C -0.19 -3.03 10.29 23.83 0.25 -2.78 16 22 C 0.13 1.26 11.11 83.00 0.92 2.18 16 23 N -0.60 -9.35 5.23 -319.28 -1.67 -11.02 16 24 H 0.43 4.02 8.87 -92.71 -0.82 3.20 16 25 C 0.56 15.16 7.71 85.22 0.66 15.82 16 26 O -0.59 -19.76 17.89 -5.16 -0.09 -19.85 16 27 C -0.34 -9.73 6.48 23.45 0.15 -9.57 16 28 S 0.28 8.23 17.97 -56.49 -1.02 7.21 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.04 1.45 6.87 -2.39 -0.02 1.43 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.37 21.53 7.06 -92.71 -0.65 20.88 16 35 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.10 1.99 7.72 -2.39 -0.02 1.97 16 37 H 0.11 2.76 6.54 -2.39 -0.02 2.74 16 38 H 0.07 1.97 4.63 -20.73 -0.10 1.87 16 39 H 0.16 4.75 8.00 -2.91 -0.02 4.72 16 40 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.23 -0.48 8.06 -2.91 -0.02 -0.51 16 Total: -1.00 -86.05 355.67 1.72 -84.33 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.46 Total: 27.63 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.43 Total: 12.45 kcal Atomic # 7 Polarization: -129.94 SS G_CDS: -5.11 Total: -135.05 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.16 Total: -45.67 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -1.02 Total: 7.21 kcal Total: -86.05 1.72 -84.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271020975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.144 kcal (2) G-P(sol) polarization free energy of solvation -86.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds