Wall clock time and date at job start Tue Mar 31 2020 19:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46725 * 2 1 4 4 C 1.53002 * 109.46726 * 119.99659 * 2 1 3 5 5 N 1.46503 * 109.46731 * 174.99963 * 4 2 1 6 6 C 1.36935 * 119.99710 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00395 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00029 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99868 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00365 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46754 * 59.99767 * 10 8 6 12 12 H 1.48497 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47183 * 300.00001 * 10 8 6 14 14 N 1.46497 * 109.47334 * 239.99644 * 2 1 3 15 15 C 1.46497 * 119.99905 * 300.00586 * 14 2 1 16 16 C 1.34778 * 120.00064 * 119.99986 * 14 2 1 17 17 O 1.21610 * 119.99494 * 359.91327 * 16 14 2 18 18 C 1.47293 * 119.99876 * 179.91717 * 16 14 2 19 19 C 1.34225 * 124.78773 * 171.20574 * 18 16 14 20 20 C 1.39567 * 115.52883 * 179.97438 * 19 18 16 21 21 C 1.47758 * 129.59456 * 180.02562 * 20 19 18 22 22 C 1.34059 * 119.55550 * 179.97438 * 21 20 19 23 23 N 1.36553 * 121.42876 * 359.97438 * 22 21 20 24 24 H 0.96996 * 119.16552 * 179.97438 * 23 22 21 25 25 C 1.34310 * 121.67660 * 359.97438 * 23 22 21 26 26 O 1.21951 * 119.69097 * 180.02562 * 25 23 22 27 27 C 1.39387 * 112.90467 * 359.97438 * 20 19 18 28 28 S 1.75554 * 124.79334 * 351.15539 * 18 16 14 29 29 H 1.09003 * 109.47090 * 300.00592 * 1 2 3 30 30 H 1.09000 * 109.46725 * 60.00013 * 1 2 3 31 31 H 1.08997 * 109.46725 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47275 * 294.99806 * 4 2 1 33 33 H 1.08994 * 109.47183 * 55.00388 * 4 2 1 34 34 H 0.96999 * 120.00218 * 0.02562 * 5 4 2 35 35 H 0.97003 * 120.00234 * 180.02562 * 9 8 6 36 36 H 1.09008 * 109.46914 * 263.41193 * 15 14 2 37 37 H 1.09001 * 109.47429 * 23.40992 * 15 14 2 38 38 H 1.08998 * 109.47523 * 143.41438 * 15 14 2 39 39 H 1.08000 * 122.23461 * 359.96105 * 19 18 16 40 40 H 1.08001 * 120.22012 * 359.69921 * 21 20 19 41 41 H 1.07997 * 119.28367 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1838 -1.4378 2.2074 7 1 3.6468 -1.8430 3.0523 8 6 5.5673 -1.5370 2.1521 9 7 6.2218 -1.0438 1.1222 10 14 6.5002 -2.3705 3.5393 11 1 6.0443 -3.7781 3.6665 12 1 7.9549 -2.3468 3.2419 13 1 6.2428 -1.6499 4.8119 14 7 2.0185 -0.6907 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.7933 -0.0357 -2.0833 17 8 3.0857 1.1290 -1.8916 18 6 3.2858 -0.7307 -3.2849 19 6 3.9172 -0.1356 -4.3090 20 6 4.3019 -0.9804 -5.3512 21 6 5.0055 -0.6620 -6.6109 22 6 5.2786 -1.6435 -7.4821 23 7 4.9209 -2.9374 -7.2322 24 1 5.1345 -3.6216 -7.8857 25 6 4.2806 -3.2869 -6.1044 26 8 3.9786 -4.4536 -5.9180 27 6 3.9516 -2.3110 -5.1283 28 16 3.1311 -2.4544 -3.5793 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 3.9825 -0.4622 0.4320 35 1 7.1886 -1.1134 1.0833 36 1 2.4721 -2.7348 -1.0752 37 1 0.7487 -2.3311 -0.8866 38 1 1.5093 -2.2574 -2.4942 39 1 4.1142 0.9262 -4.3256 40 1 5.2939 0.3555 -6.8302 41 1 5.7927 -1.4058 -8.4017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271020977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:07 Heat of formation + Delta-G solvation = -21.090431 kcal Electronic energy + Delta-G solvation = -26469.490690 eV Core-core repulsion = 22669.042183 eV Total energy + Delta-G solvation = -3800.448507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99070 -41.26575 -38.74356 -37.92674 -36.97783 -35.94262 -33.85209 -32.35542 -31.68639 -30.64335 -28.24876 -27.41368 -26.74927 -24.82958 -24.42577 -23.12410 -21.66930 -20.69395 -19.78397 -19.25199 -19.13080 -18.18168 -17.56985 -17.10003 -16.93428 -16.78803 -16.51760 -16.47582 -15.57789 -15.42294 -15.24565 -15.10738 -14.74656 -14.38740 -14.03946 -13.90133 -13.75861 -13.70357 -13.45090 -13.29463 -13.06780 -12.98487 -12.95495 -12.75461 -12.55801 -12.19391 -11.84971 -11.76235 -11.66788 -11.38928 -11.24676 -10.94476 -10.42672 -10.16513 -9.68975 -9.00918 -8.73420 -7.93904 -5.24075 -1.02673 0.18199 0.44329 0.75747 1.02608 1.44658 1.48345 1.54334 1.76517 1.97228 2.08927 2.50244 2.54970 3.19512 3.39222 3.59883 3.69325 3.83495 3.88557 3.97606 4.04569 4.24751 4.29403 4.36395 4.48488 4.53589 4.65635 4.67184 4.77719 4.87581 4.94721 4.97675 5.02285 5.12005 5.24528 5.30328 5.46196 5.51911 5.78414 5.90626 6.16414 6.25748 6.87018 6.91375 7.32085 8.08422 8.30888 9.29079 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.003846 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.512266 B = 7278.200621 C = 8423.591196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.130 3.870 3 H 0.076 0.924 4 C 0.140 3.860 5 N -0.744 5.744 6 C -0.244 4.244 7 H 0.080 0.920 8 C -0.076 4.076 9 N -0.970 5.970 10 Si 0.974 3.026 11 H -0.275 1.275 12 H -0.299 1.299 13 H -0.277 1.277 14 N -0.587 5.587 15 C 0.059 3.941 16 C 0.579 3.421 17 O -0.563 6.563 18 C -0.229 4.229 19 C -0.069 4.069 20 C -0.001 4.001 21 C -0.190 4.190 22 C 0.129 3.871 23 N -0.603 5.603 24 H 0.433 0.567 25 C 0.560 3.440 26 O -0.588 6.588 27 C -0.335 4.335 28 S 0.268 5.732 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.163 0.837 40 H 0.182 0.818 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -0.415 -20.175 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.387 5.387 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.268 4.268 9 N -0.621 5.621 10 Si 0.803 3.197 11 H -0.201 1.201 12 H -0.225 1.225 13 H -0.203 1.203 14 N -0.317 5.317 15 C -0.085 4.085 16 C 0.367 3.633 17 O -0.444 6.444 18 C -0.351 4.351 19 C -0.103 4.103 20 C -0.017 4.017 21 C -0.214 4.214 22 C 0.005 3.995 23 N -0.240 5.240 24 H 0.274 0.726 25 C 0.357 3.643 26 O -0.473 6.473 27 C -0.455 4.455 28 S 0.540 5.460 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.103 0.897 39 H 0.180 0.820 40 H 0.200 0.800 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.777 -1.756 -18.810 21.272 hybrid contribution 1.853 0.688 -0.225 1.990 sum -7.924 -1.068 -19.035 20.646 Atomic orbital electron populations 1.22017 0.90597 1.03997 1.03629 1.21458 0.96513 0.96559 0.82780 0.90576 1.21262 0.84069 0.98077 0.95270 1.42533 1.02082 1.69906 1.24146 1.19621 0.89913 1.28454 0.99605 0.90180 1.25599 0.97596 1.03104 1.00535 1.69869 1.06898 1.52848 1.32474 0.85207 0.76997 0.78624 0.78896 1.20136 1.22532 1.20274 1.47631 1.49257 1.12953 1.21884 1.22162 1.03738 0.80633 1.01998 1.17415 0.78031 0.85693 0.82181 1.90764 1.58985 1.17675 1.76928 1.24286 1.10621 0.99589 1.00566 1.20232 0.96511 1.02445 0.91080 1.19615 0.96213 0.89945 0.95973 1.21811 1.05889 1.02202 0.91502 1.22334 0.95285 0.80906 1.00983 1.43000 1.50273 1.11486 1.19230 0.72633 1.15893 0.79046 0.87129 0.82280 1.90941 1.57184 1.20318 1.78862 1.25156 1.15862 0.98594 1.05840 1.84656 1.50926 1.00808 1.09592 0.89455 0.91566 0.90123 0.94524 0.94280 0.79823 0.94267 0.92576 0.85596 0.89733 0.81951 0.80042 0.75607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.18 71.99 0.66 -2.53 16 2 C 0.13 4.34 2.79 45.00 0.13 4.47 16 3 H 0.08 2.99 6.90 -2.39 -0.02 2.98 16 4 C 0.14 5.50 5.56 86.38 0.48 5.98 16 5 N -0.74 -39.19 5.43 -343.45 -1.87 -41.06 16 6 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 7 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 8 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 9 N -0.97 -62.46 13.06 21.65 0.28 -62.18 16 10 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 14 N -0.59 -20.07 2.24 -826.62 -1.86 -21.92 16 15 C 0.06 1.64 8.01 127.77 1.02 2.67 16 16 C 0.58 22.59 7.36 86.62 0.64 23.23 16 17 O -0.56 -25.64 16.10 -4.06 -0.07 -25.70 16 18 C -0.23 -7.82 6.15 23.74 0.15 -7.67 16 19 C -0.07 -2.06 9.82 21.67 0.21 -1.85 16 20 C 0.00 -0.04 6.08 -20.16 -0.12 -0.16 16 21 C -0.19 -2.78 10.29 23.84 0.25 -2.53 16 22 C 0.13 1.17 11.11 83.01 0.92 2.09 16 23 N -0.60 -9.35 5.23 -319.28 -1.67 -11.02 16 24 H 0.43 4.08 8.87 -92.71 -0.82 3.25 16 25 C 0.56 15.43 7.71 85.22 0.66 16.09 16 26 O -0.59 -20.46 17.89 -5.16 -0.09 -20.55 16 27 C -0.34 -9.86 6.48 23.45 0.15 -9.71 16 28 S 0.27 8.30 17.97 -56.49 -1.02 7.28 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.46 6.67 -2.39 -0.02 1.44 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.42 7.84 -2.39 -0.02 1.40 16 34 H 0.37 21.70 7.06 -92.71 -0.65 21.05 16 35 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.06 1.84 7.72 -2.38 -0.02 1.82 16 37 H 0.13 2.61 6.45 -2.39 -0.02 2.59 16 38 H 0.09 2.11 4.63 -20.75 -0.10 2.01 16 39 H 0.16 4.52 7.99 -2.91 -0.02 4.49 16 40 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.23 -0.65 8.06 -2.91 -0.02 -0.67 16 Total: -1.00 -87.51 355.66 1.74 -85.77 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.46 Total: 26.93 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.45 Total: 12.92 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -5.11 Total: -136.19 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.16 Total: -46.25 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Atomic # 16 Polarization: 8.30 SS G_CDS: -1.02 Total: 7.28 kcal Total: -87.51 1.74 -85.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271020977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.679 kcal (2) G-P(sol) polarization free energy of solvation -87.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds