Wall clock time and date at job start Tue Mar 31 2020 19:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 109.47153 * 300.00319 * 13 2 1 15 15 C 1.52992 * 109.47482 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.47188 * 59.99892 * 13 2 1 17 17 C 1.34774 * 120.00383 * 204.99951 * 16 13 2 18 18 O 1.21633 * 119.99854 * 0.02562 * 17 16 13 19 19 C 1.47297 * 120.00381 * 180.02562 * 17 16 13 20 20 C 1.35172 * 122.42369 * 179.97438 * 19 17 16 21 21 S 1.70993 * 109.16643 * 179.97438 * 20 19 17 22 22 C 1.75998 * 90.59620 * 0.02562 * 21 20 19 23 23 C 1.47138 * 125.33223 * 180.02562 * 22 21 20 24 24 C 1.36246 * 125.95875 * 359.97045 * 23 22 21 25 25 C 1.40763 * 106.72477 * 180.02562 * 24 23 22 26 26 C 1.34838 * 107.06996 * 0.02562 * 25 24 23 27 27 O 1.34239 * 108.72161 * 359.73438 * 26 25 24 28 28 N 1.30128 * 109.34000 * 359.75172 * 22 21 20 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 33 33 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47066 * 60.00169 * 15 13 2 35 35 H 1.08996 * 109.47747 * 179.97438 * 15 13 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 15 13 2 37 37 H 0.97004 * 119.99924 * 25.00373 * 16 13 2 38 38 H 1.08003 * 125.41107 * 359.97438 * 20 19 17 39 39 H 1.07998 * 126.63314 * 359.96728 * 24 23 22 40 40 H 1.07997 * 126.46052 * 180.02562 * 25 24 23 41 41 H 1.08007 * 125.63267 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2492 15 6 3.5699 -0.7219 -1.2490 16 7 1.5516 -0.0307 -2.4454 17 6 1.4229 -0.7031 -3.6063 18 8 1.7117 -1.8833 -3.6608 19 6 0.9324 -0.0086 -4.8092 20 6 0.7851 -0.6347 -5.9981 21 16 0.1979 0.4824 -7.1518 22 6 0.1854 1.7571 -5.9384 23 6 -0.2334 3.1485 -6.1702 24 6 -0.6733 3.6654 -7.3515 25 6 -0.9617 5.0231 -7.1173 26 6 -0.6870 5.2680 -5.8201 27 8 -0.2527 4.1330 -5.2499 28 7 0.5989 1.2751 -4.8026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 3.2493 -2.3958 4.2417 34 1 3.9329 -1.2360 -0.3590 35 1 3.9333 -1.2361 -2.1387 36 1 3.9336 0.3056 -1.2488 37 1 1.3210 0.9105 -2.4018 38 1 1.0036 -1.6750 -6.1888 39 1 -0.7793 3.1360 -8.2869 40 1 -1.3329 5.7343 -7.8402 41 1 -0.8014 6.2192 -5.3214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275471442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:34 Heat of formation + Delta-G solvation = 38.399798 kcal Electronic energy + Delta-G solvation = -25467.278167 eV Core-core repulsion = 21669.409350 eV Total energy + Delta-G solvation = -3797.868817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.95598 -40.59740 -38.79762 -36.67092 -33.91817 -33.59320 -32.19237 -31.66450 -29.58925 -29.29456 -28.35678 -26.05572 -23.98412 -23.82330 -22.36724 -22.15624 -20.80441 -20.04445 -19.54826 -18.99379 -17.79262 -17.44972 -16.60081 -16.57555 -15.99366 -15.49280 -15.28480 -14.59501 -14.31151 -14.01906 -13.80253 -13.59323 -13.41817 -13.38045 -13.24401 -13.00690 -12.95423 -12.43063 -12.31417 -11.81093 -11.65908 -11.15027 -10.92830 -10.79990 -10.65345 -10.60452 -10.43090 -10.28382 -10.21887 -10.04801 -9.84781 -9.73988 -9.64202 -8.99200 -8.75057 -8.45969 -6.96472 -5.75061 -3.04464 -0.20265 0.51965 1.10519 1.13506 1.86610 2.33242 2.60782 3.24158 3.34985 3.45325 3.49481 3.50625 3.57338 4.37160 4.45431 4.60684 4.63002 4.86380 4.90379 5.26375 5.27010 5.34045 5.43970 5.52190 5.57903 5.72097 5.79004 5.92210 5.93672 6.15657 6.25340 6.42285 6.46527 6.55274 6.58160 6.66241 6.84919 6.93823 7.02970 7.09268 7.70813 7.72056 8.30454 8.42728 9.53919 10.09177 10.44771 11.47323 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.002527 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.148663 B =11078.260332 C =12511.776063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.134 3.866 14 H 0.087 0.913 15 C -0.152 4.152 16 N -0.695 5.695 17 C 0.588 3.412 18 O -0.535 6.535 19 C 0.022 3.978 20 C -0.216 4.216 21 S 0.222 5.778 22 C 0.104 3.896 23 C 0.051 3.949 24 C -0.169 4.169 25 C -0.214 4.214 26 C -0.013 4.013 27 O -0.149 6.149 28 N -0.421 5.421 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.407 0.593 38 H 0.198 0.802 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 11.714 -27.618 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 H 0.069 0.931 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.345 5.345 17 C 0.371 3.629 18 O -0.412 6.412 19 C -0.115 4.115 20 C -0.358 4.358 21 S 0.479 5.521 22 C -0.171 4.171 23 C -0.003 4.003 24 C -0.192 4.192 25 C -0.234 4.234 26 C -0.084 4.084 27 O -0.043 6.043 28 N -0.136 5.136 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.243 0.757 38 H 0.215 0.785 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.857 11.135 -27.715 30.884 hybrid contribution 0.250 0.287 1.578 1.623 sum -7.607 11.422 -26.137 29.520 Atomic orbital electron populations 1.22444 0.98992 1.01072 0.99969 1.20379 0.92161 0.95617 0.85976 0.93058 1.42277 1.78229 1.10662 1.04783 1.19151 1.36776 0.93853 0.87104 0.91205 1.24737 1.02097 0.95982 0.98027 1.69655 1.50668 1.08615 1.29029 0.86268 0.77740 0.78578 0.83575 1.21320 1.21732 1.21292 1.21431 0.94618 0.97609 0.83377 0.89493 1.22054 0.94702 1.01913 1.02399 1.45931 1.64947 1.14524 1.09077 1.17041 0.78097 0.85854 0.81953 1.90824 1.51086 1.14779 1.84561 1.20318 1.06070 0.89060 0.96034 1.26698 1.05581 1.07138 0.96382 1.83683 1.57726 0.98499 1.12177 1.24302 1.05381 0.95127 0.92303 1.18841 1.07576 0.85768 0.88109 1.21813 1.04219 0.95561 0.97637 1.21750 1.08000 0.96512 0.97095 1.24407 1.00788 0.89416 0.93793 1.84218 1.65395 1.17082 1.37580 1.67197 1.11451 1.10912 1.24058 0.93438 0.92593 0.94473 0.78044 0.93433 0.89919 0.93425 0.92975 0.75731 0.78537 0.82680 0.82554 0.77248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.33 37.16 0.35 -2.77 16 2 C 0.17 3.41 2.52 -67.93 -0.17 3.24 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.72 -17.85 4.43 -53.43 -0.24 -18.08 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 9 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.13 2.45 2.20 -67.94 -0.15 2.30 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 C -0.15 -2.78 9.33 37.15 0.35 -2.43 16 16 N -0.69 -11.14 4.38 -54.93 -0.24 -11.38 16 17 C 0.59 9.56 7.76 -12.58 -0.10 9.46 16 18 O -0.54 -10.05 16.31 5.25 0.09 -9.96 16 19 C 0.02 0.29 6.64 -84.93 -0.56 -0.27 16 20 C -0.22 -2.26 10.56 29.64 0.31 -1.95 16 21 S 0.22 1.68 22.93 -107.50 -2.46 -0.79 16 22 C 0.10 1.12 7.46 -14.66 -0.11 1.01 16 23 C 0.05 0.50 7.24 -36.69 -0.27 0.24 16 24 C -0.17 -1.21 10.63 -39.34 -0.42 -1.63 16 25 C -0.21 -1.29 10.88 -39.83 -0.43 -1.72 16 26 C -0.01 -0.09 12.08 29.53 0.36 0.27 16 27 O -0.15 -1.55 10.67 4.58 0.05 -1.50 16 28 N -0.42 -5.55 10.08 -8.27 -0.08 -5.64 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 32 H 0.39 10.26 7.58 -40.82 -0.31 9.95 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.68 7.44 -51.93 -0.39 1.29 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.41 6.07 7.86 -40.82 -0.32 5.75 16 38 H 0.20 1.80 7.99 -52.48 -0.42 1.38 16 39 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.16 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.21 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -33.47 371.66 -7.82 -41.29 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.14 Total: 11.82 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.09 Total: -1.40 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.16 Total: -62.48 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.13 Total: -11.47 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.46 Total: -0.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.47 -7.82 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275471442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.693 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds