Wall clock time and date at job start Tue Mar 31 2020 19:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 109.47153 * 300.00319 * 13 2 1 15 15 C 1.52992 * 109.47482 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.47188 * 59.99892 * 13 2 1 17 17 C 1.34774 * 120.00383 * 204.99951 * 16 13 2 18 18 O 1.21633 * 119.99854 * 0.02562 * 17 16 13 19 19 C 1.47297 * 120.00381 * 180.02562 * 17 16 13 20 20 C 1.35172 * 122.42369 * 179.97438 * 19 17 16 21 21 S 1.70993 * 109.16643 * 179.97438 * 20 19 17 22 22 C 1.75998 * 90.59620 * 0.02562 * 21 20 19 23 23 C 1.47138 * 125.33223 * 180.02562 * 22 21 20 24 24 C 1.36246 * 125.95875 * 359.97045 * 23 22 21 25 25 C 1.40763 * 106.72477 * 180.02562 * 24 23 22 26 26 C 1.34838 * 107.06996 * 0.02562 * 25 24 23 27 27 O 1.34239 * 108.72161 * 359.73438 * 26 25 24 28 28 N 1.30128 * 109.34000 * 359.75172 * 22 21 20 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 33 33 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47066 * 60.00169 * 15 13 2 35 35 H 1.08996 * 109.47747 * 179.97438 * 15 13 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 15 13 2 37 37 H 0.97004 * 119.99924 * 25.00373 * 16 13 2 38 38 H 1.08003 * 125.41107 * 359.97438 * 20 19 17 39 39 H 1.07998 * 126.63314 * 359.96728 * 24 23 22 40 40 H 1.07997 * 126.46052 * 180.02562 * 25 24 23 41 41 H 1.08007 * 125.63267 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2492 15 6 3.5699 -0.7219 -1.2490 16 7 1.5516 -0.0307 -2.4454 17 6 1.4229 -0.7031 -3.6063 18 8 1.7117 -1.8833 -3.6608 19 6 0.9324 -0.0086 -4.8092 20 6 0.7851 -0.6347 -5.9981 21 16 0.1979 0.4824 -7.1518 22 6 0.1854 1.7571 -5.9384 23 6 -0.2334 3.1485 -6.1702 24 6 -0.6733 3.6654 -7.3515 25 6 -0.9617 5.0231 -7.1173 26 6 -0.6870 5.2680 -5.8201 27 8 -0.2527 4.1330 -5.2499 28 7 0.5989 1.2751 -4.8026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 3.2493 -2.3958 4.2417 34 1 3.9329 -1.2360 -0.3590 35 1 3.9333 -1.2361 -2.1387 36 1 3.9336 0.3056 -1.2488 37 1 1.3210 0.9105 -2.4018 38 1 1.0036 -1.6750 -6.1888 39 1 -0.7793 3.1360 -8.2869 40 1 -1.3329 5.7343 -7.8402 41 1 -0.8014 6.2192 -5.3214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275471442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:33 Heat of formation + Delta-G solvation = 15.191401 kcal Electronic energy + Delta-G solvation = -25468.284559 eV Core-core repulsion = 21669.409350 eV Total energy + Delta-G solvation = -3798.875209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.51190 -41.65244 -39.95101 -38.25298 -35.66194 -34.16088 -33.59763 -32.83303 -31.12432 -30.18752 -30.00270 -26.97416 -25.94077 -24.91900 -23.58489 -22.86615 -21.66012 -21.54470 -20.57168 -19.83541 -19.38640 -18.50633 -17.69661 -17.23236 -17.15586 -16.57899 -16.48782 -16.25538 -15.62502 -15.33797 -15.17357 -14.93771 -14.66213 -14.58040 -14.13274 -13.95716 -13.84532 -13.52362 -13.44651 -13.27790 -13.08443 -12.94347 -12.72800 -12.64177 -12.31743 -12.21148 -11.76864 -11.54153 -11.35315 -11.30302 -11.12055 -10.98769 -10.86926 -10.45633 -10.16815 -9.09324 -9.03399 -7.92435 -5.21963 -0.92772 -0.15895 0.31315 0.33362 1.19670 1.48224 1.51146 1.57010 1.71928 2.02681 2.10656 2.24799 2.58384 2.75004 3.40934 3.58142 3.73946 3.94444 3.99686 4.03409 4.08910 4.15001 4.16649 4.29716 4.53042 4.58875 4.72409 4.75762 4.83765 4.89074 4.94861 4.99299 5.02911 5.10912 5.25726 5.42025 5.45103 5.50520 5.54176 5.98412 6.21505 6.27784 6.50782 7.04564 7.34496 8.05934 8.31341 9.30714 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.002527 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.148663 B =11078.260332 C =12511.776063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.170 3.830 3 H 0.056 0.944 4 N -0.728 5.728 5 C -0.236 4.236 6 H 0.078 0.922 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.277 1.277 13 C 0.149 3.851 14 H 0.067 0.933 15 C -0.142 4.142 16 N -0.690 5.690 17 C 0.588 3.412 18 O -0.568 6.568 19 C -0.006 4.006 20 C -0.225 4.225 21 S 0.330 5.670 22 C 0.085 3.915 23 C 0.008 3.992 24 C -0.153 4.153 25 C -0.217 4.217 26 C -0.015 4.015 27 O -0.181 6.181 28 N -0.455 5.455 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.373 0.627 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.414 0.586 38 H 0.206 0.794 39 H 0.181 0.819 40 H 0.186 0.814 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 14.130 -30.323 34.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.061 3.939 3 H 0.074 0.926 4 N -0.368 5.368 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.203 1.203 13 C 0.043 3.957 14 H 0.086 0.914 15 C -0.201 4.201 16 N -0.340 5.340 17 C 0.372 3.628 18 O -0.448 6.448 19 C -0.142 4.142 20 C -0.368 4.368 21 S 0.589 5.411 22 C -0.189 4.189 23 C -0.045 4.045 24 C -0.176 4.176 25 C -0.236 4.236 26 C -0.085 4.085 27 O -0.077 6.077 28 N -0.171 5.171 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.205 0.795 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.251 0.749 38 H 0.223 0.777 39 H 0.198 0.802 40 H 0.203 0.797 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.115 13.608 -30.477 34.599 hybrid contribution 0.539 -0.335 2.171 2.262 sum -8.577 13.273 -28.306 32.419 Atomic orbital electron populations 1.22282 0.97674 1.00632 1.00733 1.20498 0.92856 0.95446 0.85124 0.92555 1.42416 1.78468 1.10228 1.05714 1.19534 1.35105 0.94218 0.87922 0.90432 1.25542 1.02890 0.96862 1.01399 1.69823 1.52435 1.10213 1.29483 0.85224 0.77906 0.77290 0.79394 1.20509 1.22420 1.20343 1.21029 0.94464 0.96496 0.83697 0.91446 1.21928 0.94698 1.02092 1.01355 1.45754 1.65083 1.14673 1.08506 1.17450 0.77171 0.85550 0.82594 1.90793 1.52579 1.16201 1.85224 1.19886 1.08902 0.89817 0.95616 1.27011 1.04590 1.08410 0.96742 1.83239 1.54721 0.94734 1.08454 1.24725 1.04686 0.96473 0.93037 1.19096 1.10469 0.85733 0.89161 1.22236 1.01793 0.96120 0.97484 1.22167 1.07521 0.96527 0.97395 1.25214 0.99313 0.89467 0.94508 1.84190 1.66378 1.18259 1.38893 1.67128 1.13167 1.10823 1.25996 0.94471 0.93558 0.91851 0.79453 0.94091 0.92294 0.93016 0.92106 0.74928 0.77656 0.80207 0.79676 0.74261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 9.33 71.98 0.67 -5.13 16 2 C 0.17 6.92 2.52 44.99 0.11 7.03 16 3 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 4 N -0.73 -37.03 4.43 -322.94 -1.43 -38.46 16 5 C -0.24 -13.08 9.93 84.03 0.83 -12.25 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 8 N -0.97 -59.96 13.06 21.65 0.28 -59.67 16 9 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.15 5.57 2.20 44.99 0.10 5.67 16 14 H 0.07 2.82 7.58 -2.39 -0.02 2.80 16 15 C -0.14 -5.34 9.33 71.98 0.67 -4.67 16 16 N -0.69 -22.45 4.38 -445.93 -1.95 -24.41 16 17 C 0.59 19.47 7.76 86.63 0.67 20.14 16 18 O -0.57 -21.93 16.31 -4.13 -0.07 -21.99 16 19 C -0.01 -0.15 6.64 40.70 0.27 0.12 16 20 C -0.22 -4.43 10.56 67.11 0.71 -3.72 16 21 S 0.33 4.09 22.93 -56.49 -1.30 2.79 16 22 C 0.08 1.72 7.46 87.28 0.65 2.37 16 23 C 0.01 0.15 7.24 24.14 0.17 0.33 16 24 C -0.15 -1.75 10.63 22.42 0.24 -1.51 16 25 C -0.22 -1.92 10.88 22.11 0.24 -1.68 16 26 C -0.02 -0.17 12.08 67.04 0.81 0.64 16 27 O -0.18 -3.64 10.67 -6.53 -0.07 -3.71 16 28 N -0.46 -11.90 10.08 -180.09 -1.82 -13.72 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.05 7.45 -2.39 -0.02 2.03 16 32 H 0.37 20.67 7.58 -92.71 -0.70 19.97 16 33 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.06 2.49 7.44 -2.39 -0.02 2.47 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.41 12.40 7.86 -92.71 -0.73 11.67 16 38 H 0.21 3.53 7.99 -2.91 -0.02 3.50 16 39 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.24 0.70 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -74.65 371.66 1.95 -72.70 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.35 Total: 34.40 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 6.62 Total: 3.51 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -4.92 Total: -136.26 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.14 Total: -25.70 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.79 kcal Total: -74.65 1.95 -72.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275471442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.889 kcal (2) G-P(sol) polarization free energy of solvation -74.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds