Wall clock time and date at job start Tue Mar 31 2020 19:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47269 * 2 1 4 4 N 1.46496 * 109.47434 * 120.00579 * 2 1 3 5 5 C 1.36942 * 119.99669 * 275.00010 * 4 2 1 6 6 H 1.07998 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99507 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99478 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00470 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47227 * 89.99754 * 9 7 5 11 11 H 1.48497 * 109.47463 * 209.99996 * 9 7 5 12 12 H 1.48504 * 109.47125 * 329.99914 * 9 7 5 13 13 C 1.53002 * 109.47060 * 240.00707 * 2 1 3 14 14 H 1.09002 * 109.47400 * 175.00053 * 13 2 1 15 15 C 1.53001 * 109.46745 * 294.99646 * 13 2 1 16 16 N 1.46492 * 109.47393 * 54.99780 * 13 2 1 17 17 C 1.34781 * 120.00439 * 155.00421 * 16 13 2 18 18 O 1.21733 * 119.99597 * 359.97438 * 17 16 13 19 19 C 1.46418 * 120.00187 * 179.72429 * 17 16 13 20 20 C 1.36815 * 125.99980 * 179.97438 * 19 17 16 21 21 N 1.30351 * 115.31170 * 179.84465 * 20 19 17 22 22 C 1.30920 * 117.32572 * 0.45795 * 21 20 19 23 23 C 1.46861 * 125.29612 * 179.76812 * 22 21 20 24 24 C 1.36424 * 125.97033 * 359.97438 * 23 22 21 25 25 C 1.40614 * 106.71687 * 179.97438 * 24 23 22 26 26 C 1.34955 * 107.08866 * 359.97438 * 25 24 23 27 27 O 1.34158 * 108.74751 * 359.76914 * 26 25 24 28 28 S 1.76124 * 109.41672 * 359.74849 * 22 21 20 29 29 H 1.09002 * 109.47257 * 59.99842 * 1 2 3 30 30 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46902 * 299.99590 * 1 2 3 32 32 H 0.96998 * 119.99898 * 94.99580 * 4 2 1 33 33 H 0.97004 * 119.99932 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47065 * 179.97438 * 15 13 2 35 35 H 1.08995 * 109.47392 * 299.99745 * 15 13 2 36 36 H 1.09008 * 109.47263 * 60.00202 * 15 13 2 37 37 H 0.97000 * 120.00247 * 334.99991 * 16 13 2 38 38 H 1.08006 * 122.34075 * 0.03379 * 20 19 17 39 39 H 1.08004 * 126.64291 * 359.93471 * 24 23 22 40 40 H 1.07996 * 126.45567 * 180.02562 * 25 24 23 41 41 H 1.08008 * 125.62360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4242 7 6 2.6114 -0.6622 3.5091 8 7 2.7367 -0.0058 4.6430 9 14 3.0558 -2.4746 3.4251 10 1 4.4886 -2.6167 3.0618 11 1 2.8157 -3.1050 4.7481 12 1 2.2162 -3.1431 2.3987 13 6 2.0400 -0.7211 -1.2494 14 1 3.1263 -0.6442 -1.2953 15 6 1.6352 -2.1953 -1.1881 16 7 1.4558 -0.1035 -2.4424 17 6 2.0911 -0.1935 -3.6276 18 8 3.1506 -0.7877 -3.7067 19 6 1.5043 0.4187 -4.8212 20 6 2.0408 0.4027 -6.0797 21 7 1.3382 1.0124 -6.9928 22 6 0.2178 1.5738 -6.6139 23 6 -0.7031 2.3073 -7.4918 24 6 -0.5378 2.5183 -8.8294 25 6 -1.6510 3.2603 -9.2624 26 6 -2.4351 3.4651 -8.1833 27 8 -1.8629 2.8842 -7.1180 28 16 -0.0136 1.3121 -4.8877 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 1.1524 33 1 3.0601 -0.4631 5.4350 34 1 1.9981 -2.7090 -2.0784 35 1 2.0699 -2.6549 -0.3005 36 1 0.5488 -2.2723 -1.1422 37 1 0.6117 0.3703 -2.3794 38 1 2.9792 -0.0838 -6.3016 39 1 0.2884 2.1813 -9.4379 40 1 -1.8428 3.6012 -10.2691 41 1 -3.3708 4.0047 -8.1789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275538529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:14 Heat of formation + Delta-G solvation = 25.377620 kcal Electronic energy + Delta-G solvation = -25201.817864 eV Core-core repulsion = 21403.384363 eV Total energy + Delta-G solvation = -3798.433501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.61624 -41.37987 -40.35801 -38.55149 -35.75587 -34.22529 -33.85747 -32.87229 -31.58508 -30.23913 -29.81058 -26.95304 -26.13736 -25.00367 -23.46107 -22.54659 -22.50254 -21.00969 -20.59131 -20.21804 -19.71663 -18.27843 -17.82563 -17.31334 -17.12459 -16.75325 -16.50693 -16.05170 -15.87780 -15.64232 -15.46711 -15.19106 -15.08843 -14.66036 -14.12265 -13.99639 -13.90055 -13.76058 -13.52780 -13.26631 -13.16744 -12.89057 -12.76393 -12.72341 -12.20817 -12.00362 -11.80184 -11.66620 -11.47888 -11.27570 -11.04076 -11.01901 -10.87270 -10.54825 -10.29786 -9.37102 -9.13940 -8.02595 -5.36810 -1.33656 -0.16936 0.27611 0.50418 1.33708 1.37197 1.40736 1.46230 1.46963 1.71079 1.86522 2.01428 2.47658 3.20184 3.28641 3.56518 3.59558 3.64458 3.80479 3.96945 3.97799 4.00839 4.15386 4.22651 4.51508 4.57834 4.60620 4.76591 4.85898 4.87811 4.92096 4.94546 4.98072 5.10820 5.17322 5.30768 5.44065 5.55279 5.76889 5.89786 6.19513 6.22496 6.34677 6.92159 7.06530 7.80657 7.99467 9.18438 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.002258 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.177388 B =12398.489786 C =13095.549145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 H 0.050 0.950 4 N -0.746 5.746 5 C -0.227 4.227 6 H 0.061 0.939 7 C -0.062 4.062 8 N -0.981 5.981 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.248 1.248 13 C 0.144 3.856 14 H 0.073 0.927 15 C -0.158 4.158 16 N -0.703 5.703 17 C 0.598 3.402 18 O -0.558 6.558 19 C -0.307 4.307 20 C 0.132 3.868 21 N -0.475 5.475 22 C 0.152 3.848 23 C -0.017 4.017 24 C -0.119 4.119 25 C -0.227 4.227 26 C 0.012 3.988 27 O -0.180 6.180 28 S 0.199 5.801 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.407 0.593 38 H 0.201 0.799 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.610 5.232 -31.866 35.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.060 3.940 3 H 0.068 0.932 4 N -0.392 5.392 5 C -0.358 4.358 6 H 0.079 0.921 7 C -0.254 4.254 8 N -0.632 5.632 9 Si 0.773 3.227 10 H -0.208 1.208 11 H -0.222 1.222 12 H -0.173 1.173 13 C 0.039 3.961 14 H 0.092 0.908 15 C -0.216 4.216 16 N -0.356 5.356 17 C 0.384 3.616 18 O -0.439 6.439 19 C -0.432 4.432 20 C -0.028 4.028 21 N -0.190 5.190 22 C -0.117 4.117 23 C -0.069 4.069 24 C -0.144 4.144 25 C -0.246 4.246 26 C -0.058 4.058 27 O -0.076 6.076 28 S 0.460 5.540 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.203 0.797 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.246 0.754 38 H 0.217 0.783 39 H 0.182 0.818 40 H 0.203 0.797 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.630 5.278 -31.140 34.400 hybrid contribution 1.141 -1.119 0.447 1.659 sum -12.490 4.159 -30.693 33.397 Atomic orbital electron populations 1.22373 0.96328 1.02264 1.01219 1.20489 0.94006 0.95143 0.84399 0.93204 1.42760 1.80215 1.09626 1.06549 1.18985 1.35196 0.94516 0.87060 0.92138 1.25441 1.02338 1.02314 0.95267 1.69869 1.54539 1.37621 1.01143 0.85549 0.78628 0.81234 0.77242 1.20785 1.22229 1.17276 1.21078 0.98265 0.93409 0.83334 0.90848 1.22144 1.02925 0.94682 1.01890 1.45926 1.25792 1.56471 1.07364 1.16805 0.83700 0.79017 0.82066 1.90845 1.23124 1.44323 1.85587 1.25791 1.03229 1.14595 0.99554 1.22437 1.00132 0.95000 0.85243 1.66406 1.04747 1.12475 1.35419 1.24543 0.94328 0.99296 0.93561 1.18577 0.89025 1.06671 0.92664 1.22297 1.00788 0.98890 0.92388 1.22260 0.95279 1.04746 1.02335 1.25370 1.00293 0.97321 0.82807 1.84065 1.29413 1.55719 1.38377 1.84833 1.16808 1.45858 1.06482 0.90953 0.91894 0.93694 0.79735 0.93381 0.92142 0.92128 0.90428 0.75447 0.78270 0.81798 0.79725 0.72842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.01 71.98 0.65 -4.21 16 2 C 0.17 6.01 2.93 44.99 0.13 6.14 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.75 -33.58 4.84 -322.95 -1.56 -35.14 16 5 C -0.23 -12.61 10.41 84.03 0.87 -11.74 16 6 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 7 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 8 N -0.98 -62.51 13.97 21.65 0.30 -62.21 16 9 Si 0.95 45.18 27.74 68.60 1.90 47.09 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.25 -10.56 6.52 99.48 0.65 -9.92 16 13 C 0.14 4.52 2.62 44.99 0.12 4.64 16 14 H 0.07 2.64 7.58 -2.39 -0.02 2.63 16 15 C -0.16 -4.58 9.00 71.98 0.65 -3.94 16 16 N -0.70 -18.28 4.98 -446.73 -2.23 -20.50 16 17 C 0.60 16.80 7.74 86.37 0.67 17.47 16 18 O -0.56 -19.43 16.52 -4.45 -0.07 -19.50 16 19 C -0.31 -7.10 6.50 24.07 0.16 -6.94 16 20 C 0.13 2.93 11.04 84.58 0.93 3.86 16 21 N -0.48 -10.34 10.47 -188.73 -1.98 -12.31 16 22 C 0.15 3.01 7.44 87.09 0.65 3.66 16 23 C -0.02 -0.28 7.21 24.10 0.17 -0.11 16 24 C -0.12 -1.60 10.79 22.43 0.24 -1.36 16 25 C -0.23 -1.73 10.88 22.09 0.24 -1.49 16 26 C 0.01 0.08 12.08 67.06 0.81 0.89 16 27 O -0.18 -2.52 10.67 -6.26 -0.07 -2.59 16 28 S 0.20 3.64 22.52 -56.49 -1.27 2.37 16 29 H 0.07 1.60 6.29 -2.39 -0.02 1.58 16 30 H 0.06 1.79 6.56 -2.39 -0.02 1.78 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.37 15.96 3.63 -92.71 -0.34 15.63 16 33 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.89 6.29 -2.39 -0.02 1.87 16 36 H 0.08 1.98 6.57 -2.38 -0.02 1.96 16 37 H 0.41 8.68 5.74 -92.71 -0.53 8.15 16 38 H 0.20 4.00 8.06 -2.91 -0.02 3.97 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.19 0.34 8.06 -2.91 -0.02 0.31 16 41 H 0.26 -0.82 8.06 -2.91 -0.02 -0.84 16 Total: -1.00 -74.49 361.22 1.96 -72.53 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.17 Total: 26.55 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 6.76 Total: 3.71 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -5.46 Total: -130.16 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.14 Total: -22.09 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.27 Total: 2.37 kcal Total: -74.49 1.96 -72.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275538529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.906 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds