Wall clock time and date at job start Tue Mar 31 2020 19:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 N 1.46505 * 109.46891 * 240.00156 * 2 1 3 5 5 C 1.36937 * 119.99900 * 84.99804 * 4 2 1 6 6 H 1.07999 * 120.00242 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99908 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00244 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99897 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47007 * 89.99983 * 9 7 5 11 11 H 1.48502 * 109.46874 * 209.99706 * 9 7 5 12 12 H 1.48493 * 109.46943 * 329.99347 * 9 7 5 13 13 C 1.53001 * 109.47375 * 119.99885 * 2 1 3 14 14 H 1.08999 * 109.46935 * 185.00081 * 13 2 1 15 15 C 1.52999 * 109.46944 * 65.00342 * 13 2 1 16 16 N 1.46499 * 109.47193 * 305.00139 * 13 2 1 17 17 C 1.34777 * 119.99665 * 205.27836 * 16 13 2 18 18 O 1.21723 * 120.00180 * 359.72124 * 17 16 13 19 19 C 1.46425 * 119.99669 * 179.72457 * 17 16 13 20 20 C 1.36810 * 125.99773 * 179.71235 * 19 17 16 21 21 N 1.30364 * 115.31016 * 179.84223 * 20 19 17 22 22 C 1.30921 * 117.32137 * 0.45891 * 21 20 19 23 23 C 1.46853 * 125.29120 * 179.76613 * 22 21 20 24 24 C 1.36430 * 125.97294 * 359.97438 * 23 22 21 25 25 C 1.40614 * 106.71718 * 180.02562 * 24 23 22 26 26 C 1.34958 * 107.09315 * 359.97438 * 25 24 23 27 27 O 1.34165 * 108.74247 * 359.73552 * 26 25 24 28 28 S 1.76128 * 109.41912 * 359.74780 * 22 21 20 29 29 H 1.09005 * 109.46766 * 299.99565 * 1 2 3 30 30 H 1.08994 * 109.47543 * 59.99852 * 1 2 3 31 31 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 32 32 H 0.96993 * 119.99762 * 264.99016 * 4 2 1 33 33 H 0.97002 * 120.00308 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46823 * 179.97438 * 15 13 2 35 35 H 1.08999 * 109.47091 * 299.99643 * 15 13 2 36 36 H 1.08996 * 109.47098 * 60.00014 * 15 13 2 37 37 H 0.97001 * 119.99790 * 24.99549 * 16 13 2 38 38 H 1.08001 * 122.34645 * 0.02562 * 20 19 17 39 39 H 1.07995 * 126.64418 * 359.97194 * 24 23 22 40 40 H 1.07993 * 126.45649 * 180.02562 * 25 24 23 41 41 H 1.07998 * 125.62731 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8917 1.0403 -2.4244 7 6 2.6121 -0.6616 -3.5091 8 7 2.7373 -0.0052 -4.6430 9 14 3.0564 -2.4742 -3.4252 10 1 1.8593 -3.2925 -3.7451 11 1 4.1322 -2.7660 -4.4065 12 1 3.5310 -2.8046 -2.0575 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6442 1.2951 15 6 1.6354 -2.1954 1.1879 16 7 1.4559 -0.1036 2.4424 17 6 2.0942 -0.1890 3.6264 18 8 3.1534 -0.7835 3.7054 19 6 1.5133 0.4335 4.8177 20 6 2.0503 0.4181 6.0759 21 7 1.3568 1.0434 6.9855 22 6 0.2349 1.6021 6.6073 23 6 -0.6817 2.3429 7.4835 24 6 -0.5106 2.5637 8.8189 25 6 -1.6213 3.3099 9.2510 26 6 -2.4093 3.5085 8.1735 27 8 -1.8363 2.9290 7.1077 28 16 -0.0041 1.3276 4.8840 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 3.0606 -0.4624 -5.4350 34 1 1.9992 -2.7093 2.0777 35 1 0.5491 -2.2724 1.1421 36 1 2.0700 -2.6549 0.3002 37 1 0.6119 0.3702 2.3794 38 1 2.9849 -0.0750 6.2993 39 1 0.3171 2.2293 9.4266 40 1 -1.8082 3.6591 10.2557 41 1 -3.3443 4.0491 8.1689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275538530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:17 Heat of formation + Delta-G solvation = 25.333276 kcal Electronic energy + Delta-G solvation = -25201.899936 eV Core-core repulsion = 21403.464512 eV Total energy + Delta-G solvation = -3798.435424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61445 -41.38182 -40.35810 -38.55320 -35.75754 -34.22507 -33.85813 -32.87301 -31.58635 -30.23873 -29.81069 -26.95280 -26.13571 -25.00392 -23.46186 -22.54674 -22.50377 -21.01152 -20.59215 -20.21859 -19.71700 -18.27907 -17.82660 -17.31252 -17.12423 -16.75977 -16.50678 -16.05603 -15.88024 -15.63743 -15.46849 -15.19337 -15.08919 -14.65960 -14.11264 -13.99645 -13.90060 -13.75937 -13.52826 -13.25680 -13.17804 -12.90572 -12.76331 -12.68917 -12.28406 -11.94040 -11.80306 -11.68354 -11.47991 -11.27662 -11.04193 -11.01594 -10.87353 -10.54820 -10.30029 -9.37158 -9.13960 -8.02590 -5.36863 -1.33693 -0.16985 0.27525 0.50331 1.33655 1.37712 1.40234 1.46191 1.47039 1.70997 1.86242 2.01404 2.47569 3.20134 3.28724 3.56198 3.59624 3.64413 3.80203 3.96946 3.97801 4.00782 4.15382 4.22563 4.51543 4.57993 4.60587 4.76763 4.85954 4.87747 4.92190 4.94552 4.98093 5.10846 5.17538 5.30684 5.44059 5.55577 5.76798 5.89747 6.19479 6.22424 6.34580 6.92052 7.06499 7.80614 7.99449 9.18431 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.002259 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.430748 B =12393.916538 C =13091.625480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 H 0.049 0.951 4 N -0.746 5.746 5 C -0.227 4.227 6 H 0.061 0.939 7 C -0.062 4.062 8 N -0.981 5.981 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.298 1.298 12 H -0.254 1.254 13 C 0.144 3.856 14 H 0.072 0.928 15 C -0.158 4.158 16 N -0.703 5.703 17 C 0.598 3.402 18 O -0.559 6.559 19 C -0.307 4.307 20 C 0.132 3.868 21 N -0.475 5.475 22 C 0.152 3.848 23 C -0.017 4.017 24 C -0.119 4.119 25 C -0.227 4.227 26 C 0.012 3.988 27 O -0.180 6.180 28 S 0.200 5.800 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.407 0.593 38 H 0.201 0.799 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.558 5.294 31.844 35.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.060 3.940 3 H 0.067 0.933 4 N -0.392 5.392 5 C -0.358 4.358 6 H 0.079 0.921 7 C -0.254 4.254 8 N -0.632 5.632 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.224 1.224 12 H -0.178 1.178 13 C 0.039 3.961 14 H 0.090 0.910 15 C -0.216 4.216 16 N -0.355 5.355 17 C 0.384 3.616 18 O -0.439 6.439 19 C -0.432 4.432 20 C -0.028 4.028 21 N -0.190 5.190 22 C -0.117 4.117 23 C -0.069 4.069 24 C -0.144 4.144 25 C -0.246 4.246 26 C -0.058 4.058 27 O -0.076 6.076 28 S 0.460 5.540 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.203 0.797 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.246 0.754 38 H 0.217 0.783 39 H 0.182 0.818 40 H 0.203 0.797 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.570 5.345 31.118 34.366 hybrid contribution 1.148 -1.115 -0.443 1.660 sum -12.421 4.230 30.675 33.364 Atomic orbital electron populations 1.22371 0.96237 1.02333 1.01228 1.20492 0.94062 0.95103 0.84377 0.93281 1.42765 1.80114 1.09739 1.06542 1.18984 1.35225 0.94608 0.86943 0.92140 1.25440 1.02311 1.02323 0.95278 1.69868 1.54574 1.37612 1.01120 0.85538 0.77880 0.81171 0.78005 1.20069 1.22443 1.17841 1.21073 0.98188 0.93470 0.83351 0.90999 1.22141 1.02984 0.94634 1.01884 1.45927 1.25700 1.56499 1.07417 1.16806 0.83674 0.79044 0.82070 1.90843 1.23135 1.44434 1.85492 1.25790 1.03339 1.14474 0.99572 1.22437 1.00175 0.94919 0.85283 1.66413 1.04880 1.12341 1.35413 1.24543 0.94229 0.99334 0.93619 1.18576 0.89308 1.06361 0.92690 1.22297 1.00797 0.98793 0.92472 1.22260 0.95175 1.04787 1.02397 1.25371 1.00233 0.97384 0.82795 1.84067 1.29835 1.55470 1.38205 1.84832 1.16660 1.45822 1.06644 0.90952 0.93679 0.91794 0.79734 0.93376 0.92183 0.90274 0.92154 0.75430 0.78279 0.81801 0.79726 0.72843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.01 71.98 0.65 -4.19 16 2 C 0.17 6.02 2.93 44.99 0.13 6.15 16 3 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 4 N -0.75 -33.62 4.84 -322.93 -1.56 -35.18 16 5 C -0.23 -12.62 10.41 84.03 0.87 -11.75 16 6 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 7 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 8 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 9 Si 0.95 45.22 27.74 68.60 1.90 47.12 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 13 C 0.14 4.54 2.62 44.99 0.12 4.66 16 14 H 0.07 2.61 7.57 -2.39 -0.02 2.60 16 15 C -0.16 -4.58 9.00 71.98 0.65 -3.93 16 16 N -0.70 -18.31 4.98 -446.74 -2.23 -20.54 16 17 C 0.60 16.85 7.74 86.37 0.67 17.52 16 18 O -0.56 -19.52 16.52 -4.42 -0.07 -19.59 16 19 C -0.31 -7.11 6.50 24.07 0.16 -6.96 16 20 C 0.13 2.93 11.04 84.58 0.93 3.87 16 21 N -0.48 -10.35 10.47 -188.73 -1.98 -12.32 16 22 C 0.15 3.02 7.44 87.08 0.65 3.67 16 23 C -0.02 -0.28 7.21 24.10 0.17 -0.11 16 24 C -0.12 -1.60 10.79 22.43 0.24 -1.36 16 25 C -0.23 -1.73 10.88 22.10 0.24 -1.49 16 26 C 0.01 0.08 12.08 67.07 0.81 0.89 16 27 O -0.18 -2.52 10.67 -6.38 -0.07 -2.59 16 28 S 0.20 3.65 22.52 -56.49 -1.27 2.37 16 29 H 0.07 1.59 6.29 -2.38 -0.02 1.58 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.80 6.56 -2.39 -0.02 1.79 16 32 H 0.37 15.99 3.63 -92.71 -0.34 15.65 16 33 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.99 6.56 -2.39 -0.02 1.98 16 36 H 0.06 1.88 6.29 -2.39 -0.02 1.87 16 37 H 0.41 8.68 5.74 -92.71 -0.53 8.15 16 38 H 0.20 4.01 8.05 -2.91 -0.02 3.98 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.19 0.34 8.06 -2.91 -0.02 0.31 16 41 H 0.26 -0.82 8.06 -2.91 -0.02 -0.84 16 Total: -1.00 -74.57 361.22 1.96 -72.61 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.17 Total: 26.52 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.76 Total: 3.80 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -5.46 Total: -130.25 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.14 Total: -22.18 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.27 Total: 2.37 kcal Total: -74.57 1.96 -72.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275538530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.945 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds