Wall clock time and date at job start Tue Mar 31 2020 19:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46748 * 2 1 4 4 N 1.46492 * 109.46929 * 119.99893 * 2 1 3 5 5 C 1.34774 * 120.00364 * 275.00014 * 4 2 1 6 6 O 1.21734 * 119.99738 * 0.02562 * 5 4 2 7 7 C 1.46420 * 120.00410 * 180.02562 * 5 4 2 8 8 C 1.36808 * 126.00050 * 179.97438 * 7 5 4 9 9 N 1.30362 * 115.30941 * 179.72819 * 8 7 5 10 10 C 1.30925 * 117.32011 * 0.52279 * 9 8 7 11 11 C 1.46863 * 125.28942 * 179.76720 * 10 9 8 12 12 C 1.36426 * 125.97146 * 359.69950 * 11 10 9 13 13 C 1.40615 * 106.71343 * 179.97438 * 12 11 10 14 14 C 1.34954 * 107.09487 * 359.97438 * 13 12 11 15 15 O 1.34162 * 108.74378 * 0.23132 * 14 13 12 16 16 S 1.76116 * 109.42241 * 359.50840 * 10 9 8 17 17 C 1.53004 * 109.46944 * 240.00255 * 2 1 3 18 18 H 1.08993 * 109.47046 * 299.99743 * 17 2 1 19 19 C 1.52996 * 109.46912 * 180.02562 * 17 2 1 20 20 N 1.46498 * 109.47306 * 60.00201 * 17 2 1 21 21 C 1.36939 * 119.99587 * 205.00284 * 20 17 2 22 22 H 1.07998 * 120.00428 * 359.97438 * 21 20 17 23 23 C 1.38814 * 119.99618 * 180.02562 * 21 20 17 24 24 N 1.31616 * 120.00115 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47029 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46851 * 119.99801 * 25 23 21 28 28 H 1.48501 * 109.46946 * 239.99841 * 25 23 21 29 29 H 1.09003 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47226 * 299.99999 * 1 2 3 31 31 H 1.09005 * 109.47268 * 60.00100 * 1 2 3 32 32 H 0.97005 * 120.00102 * 95.00004 * 4 2 1 33 33 H 1.07998 * 122.34876 * 0.02562 * 8 7 5 34 34 H 1.08005 * 126.64707 * 0.02562 * 12 11 10 35 35 H 1.08003 * 126.45461 * 180.02562 * 13 12 11 36 36 H 1.08002 * 125.62611 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47353 * 59.99124 * 19 17 2 38 38 H 1.08997 * 109.47610 * 180.02562 * 19 17 2 39 39 H 1.09008 * 109.47187 * 300.00082 * 19 17 2 40 40 H 0.96995 * 120.00408 * 24.99217 * 20 17 2 41 41 H 0.97007 * 120.00125 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8571 1.1628 2.4119 7 6 2.6356 -0.7083 3.5525 8 6 2.8132 -0.1485 4.7881 9 7 3.2552 -0.9587 5.7088 10 6 3.4884 -2.1980 5.3570 11 6 3.9912 -3.2524 6.2472 12 6 4.2977 -3.1068 7.5686 13 6 4.7382 -4.3627 8.0223 14 6 4.6807 -5.2068 6.9709 15 8 4.2341 -4.5325 5.9005 16 16 3.0983 -2.4062 3.6522 17 6 2.0400 -0.7212 -1.2493 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5517 -0.0306 -2.4454 21 6 1.4209 -0.7138 -3.6250 22 1 1.6781 -1.7616 -3.6736 23 6 0.9587 -0.0592 -4.7585 24 7 0.6458 1.2178 -4.6994 25 14 0.7809 -0.9909 -6.3678 26 1 1.1957 -2.4031 -6.1706 27 1 -0.6358 -0.9479 -6.8107 28 1 1.6421 -0.3623 -7.4015 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.5976 0.8907 4.9881 34 1 4.2168 -2.2023 8.1532 35 1 5.0609 -4.6062 9.0238 36 1 4.9535 -6.2517 6.9874 37 1 3.9330 -1.2358 -0.3590 38 1 3.9334 -1.2351 -2.1392 39 1 3.9337 0.3058 -1.2487 40 1 1.3210 0.9105 -2.4019 41 1 0.3225 1.6752 -5.4915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275538531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:20 Heat of formation + Delta-G solvation = 40.022740 kcal Electronic energy + Delta-G solvation = -25108.829424 eV Core-core repulsion = 21311.030983 eV Total energy + Delta-G solvation = -3797.798441 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.07594 -40.26057 -39.25427 -36.77493 -34.03881 -33.65584 -32.29389 -31.70877 -30.05761 -28.90702 -28.40684 -26.11396 -24.04370 -23.50515 -22.47550 -21.98518 -21.24691 -20.30389 -19.70805 -18.95251 -17.68501 -17.38193 -16.71667 -16.71216 -16.07642 -15.40667 -15.17126 -14.66912 -14.63258 -14.30386 -14.03186 -13.67443 -13.44687 -13.41184 -13.33897 -13.10554 -13.05279 -12.47578 -11.97253 -11.88057 -11.74196 -11.24037 -11.00913 -10.87306 -10.74607 -10.60202 -10.41716 -10.22652 -10.15570 -10.05695 -9.92561 -9.79076 -9.71644 -9.11340 -8.87923 -8.46282 -7.03095 -5.80974 -3.10901 -0.49905 0.66179 1.13940 1.18164 1.97293 2.04386 2.46124 3.07853 3.08726 3.40563 3.46250 3.48454 3.83916 4.36181 4.45361 4.54978 4.56013 4.69551 4.89241 5.20768 5.24891 5.33430 5.44788 5.45598 5.61221 5.69191 5.70080 5.83831 5.89727 6.05765 6.11119 6.32412 6.36342 6.43131 6.45287 6.54715 6.76155 6.85907 6.97018 7.13026 7.46816 7.65809 8.11137 8.36287 9.48020 10.02419 10.37709 11.41293 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.002197 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.976003 B =12741.793001 C =13604.785336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.090 0.910 4 N -0.709 5.709 5 C 0.593 3.407 6 O -0.522 6.522 7 C -0.276 4.276 8 C 0.122 3.878 9 N -0.456 5.456 10 C 0.143 3.857 11 C 0.025 3.975 12 C -0.125 4.125 13 C -0.218 4.218 14 C -0.007 4.007 15 O -0.166 6.166 16 S 0.168 5.832 17 C 0.168 3.832 18 H 0.051 0.949 19 C -0.165 4.165 20 N -0.717 5.717 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.395 0.605 33 H 0.195 0.805 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.213 0.787 37 H 0.034 0.966 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.386 0.614 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 -12.437 26.066 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 H 0.108 0.892 4 N -0.359 5.359 5 C 0.377 3.623 6 O -0.400 6.400 7 C -0.400 4.400 8 C -0.037 4.037 9 N -0.171 5.171 10 C -0.127 4.127 11 C -0.028 4.028 12 C -0.150 4.150 13 C -0.238 4.238 14 C -0.078 4.078 15 O -0.062 6.062 16 S 0.428 5.572 17 C 0.058 3.942 18 H 0.069 0.931 19 C -0.226 4.226 20 N -0.359 5.359 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.212 0.788 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.230 0.770 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.220 0.780 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.609 -12.528 25.342 29.276 hybrid contribution -0.111 0.188 -0.602 0.640 sum 7.498 -12.339 24.740 28.645 Atomic orbital electron populations 1.22068 0.94552 1.01951 1.02596 1.21457 0.94706 0.97697 0.83016 0.89219 1.46020 1.66517 1.13621 1.09734 1.16580 0.78060 0.86185 0.81485 1.90872 1.50295 1.14544 1.84287 1.26172 1.15674 0.97301 1.00873 1.22281 0.95105 1.00966 0.85395 1.66350 1.15596 1.00437 1.34678 1.24183 1.02656 0.92522 0.93334 1.18560 1.09236 0.82305 0.92692 1.21991 1.00403 0.99692 0.92901 1.21894 1.07626 0.93134 1.01111 1.24388 1.00909 0.98532 0.83943 1.84062 1.65270 1.19482 1.37348 1.85061 1.57294 1.06780 1.08103 1.20389 0.92183 0.95602 0.86061 0.93099 1.22464 0.98992 1.01243 0.99868 1.42284 1.78188 1.10701 1.04749 1.19225 1.36863 0.93899 0.87025 0.91079 1.24752 1.02005 0.95983 0.98081 1.69671 1.50592 1.08611 1.28871 0.86123 0.77313 0.78752 0.83998 1.20581 1.21855 1.21884 0.92975 0.93275 0.89796 0.77121 0.78800 0.82037 0.82402 0.77010 0.94730 0.92454 0.93262 0.77984 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.33 37.16 0.35 -2.28 16 2 C 0.14 2.30 2.21 -67.93 -0.15 2.15 16 3 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 4 N -0.71 -10.03 4.38 -55.19 -0.24 -10.27 16 5 C 0.59 8.78 7.74 -12.97 -0.10 8.68 16 6 O -0.52 -9.38 16.52 5.16 0.09 -9.30 16 7 C -0.28 -3.38 6.50 -36.81 -0.24 -3.62 16 8 C 0.12 1.41 11.04 -18.69 -0.21 1.21 16 9 N -0.46 -5.23 10.47 -11.01 -0.12 -5.35 16 10 C 0.14 1.53 7.44 -14.45 -0.11 1.43 16 11 C 0.03 0.24 7.21 -36.75 -0.26 -0.03 16 12 C -0.13 -0.99 10.79 -39.34 -0.42 -1.42 16 13 C -0.22 -1.23 10.88 -39.85 -0.43 -1.67 16 14 C -0.01 -0.04 12.08 29.57 0.36 0.32 16 15 O -0.17 -1.40 10.67 4.63 0.05 -1.35 16 16 S 0.17 1.70 22.52 -107.50 -2.42 -0.72 16 17 C 0.17 3.18 2.52 -67.93 -0.17 3.00 16 18 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 19 C -0.17 -2.90 9.33 37.16 0.35 -2.56 16 20 N -0.72 -17.17 4.43 -53.43 -0.24 -17.40 16 21 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 25 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.62 7.45 -51.93 -0.39 1.24 16 32 H 0.39 4.75 7.55 -40.82 -0.31 4.44 16 33 H 0.20 2.01 8.05 -52.49 -0.42 1.59 16 34 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16 35 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 36 H 0.21 0.23 8.06 -52.49 -0.42 -0.19 16 37 H 0.03 0.50 7.44 -51.93 -0.39 0.11 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.39 9.95 7.58 -40.82 -0.31 9.64 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -32.19 372.05 -8.00 -40.19 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.13 Total: 10.17 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.29 Total: -1.73 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.13 Total: -59.81 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.13 Total: -10.65 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.42 Total: -0.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.19 -8.00 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275538531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.211 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds