Wall clock time and date at job start Tue Mar 31 2020 19:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46748 * 2 1 4 4 N 1.46492 * 109.46929 * 119.99893 * 2 1 3 5 5 C 1.34774 * 120.00364 * 275.00014 * 4 2 1 6 6 O 1.21734 * 119.99738 * 0.02562 * 5 4 2 7 7 C 1.46420 * 120.00410 * 180.02562 * 5 4 2 8 8 C 1.36808 * 126.00050 * 179.97438 * 7 5 4 9 9 N 1.30362 * 115.30941 * 179.72819 * 8 7 5 10 10 C 1.30925 * 117.32011 * 0.52279 * 9 8 7 11 11 C 1.46863 * 125.28942 * 179.76720 * 10 9 8 12 12 C 1.36426 * 125.97146 * 359.69950 * 11 10 9 13 13 C 1.40615 * 106.71343 * 179.97438 * 12 11 10 14 14 C 1.34954 * 107.09487 * 359.97438 * 13 12 11 15 15 O 1.34162 * 108.74378 * 0.23132 * 14 13 12 16 16 S 1.76116 * 109.42241 * 359.50840 * 10 9 8 17 17 C 1.53004 * 109.46944 * 240.00255 * 2 1 3 18 18 H 1.08993 * 109.47046 * 299.99743 * 17 2 1 19 19 C 1.52996 * 109.46912 * 180.02562 * 17 2 1 20 20 N 1.46498 * 109.47306 * 60.00201 * 17 2 1 21 21 C 1.36939 * 119.99587 * 205.00284 * 20 17 2 22 22 H 1.07998 * 120.00428 * 359.97438 * 21 20 17 23 23 C 1.38814 * 119.99618 * 180.02562 * 21 20 17 24 24 N 1.31616 * 120.00115 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47029 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46851 * 119.99801 * 25 23 21 28 28 H 1.48501 * 109.46946 * 239.99841 * 25 23 21 29 29 H 1.09003 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47226 * 299.99999 * 1 2 3 31 31 H 1.09005 * 109.47268 * 60.00100 * 1 2 3 32 32 H 0.97005 * 120.00102 * 95.00004 * 4 2 1 33 33 H 1.07998 * 122.34876 * 0.02562 * 8 7 5 34 34 H 1.08005 * 126.64707 * 0.02562 * 12 11 10 35 35 H 1.08003 * 126.45461 * 180.02562 * 13 12 11 36 36 H 1.08002 * 125.62611 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47353 * 59.99124 * 19 17 2 38 38 H 1.08997 * 109.47610 * 180.02562 * 19 17 2 39 39 H 1.09008 * 109.47187 * 300.00082 * 19 17 2 40 40 H 0.96995 * 120.00408 * 24.99217 * 20 17 2 41 41 H 0.97007 * 120.00125 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8571 1.1628 2.4119 7 6 2.6356 -0.7083 3.5525 8 6 2.8132 -0.1485 4.7881 9 7 3.2552 -0.9587 5.7088 10 6 3.4884 -2.1980 5.3570 11 6 3.9912 -3.2524 6.2472 12 6 4.2977 -3.1068 7.5686 13 6 4.7382 -4.3627 8.0223 14 6 4.6807 -5.2068 6.9709 15 8 4.2341 -4.5325 5.9005 16 16 3.0983 -2.4062 3.6522 17 6 2.0400 -0.7212 -1.2493 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5517 -0.0306 -2.4454 21 6 1.4209 -0.7138 -3.6250 22 1 1.6781 -1.7616 -3.6736 23 6 0.9587 -0.0592 -4.7585 24 7 0.6458 1.2178 -4.6994 25 14 0.7809 -0.9909 -6.3678 26 1 1.1957 -2.4031 -6.1706 27 1 -0.6358 -0.9479 -6.8107 28 1 1.6421 -0.3623 -7.4015 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.5976 0.8907 4.9881 34 1 4.2168 -2.2023 8.1532 35 1 5.0609 -4.6062 9.0238 36 1 4.9535 -6.2517 6.9874 37 1 3.9330 -1.2358 -0.3590 38 1 3.9334 -1.2351 -2.1392 39 1 3.9337 0.3058 -1.2487 40 1 1.3210 0.9105 -2.4019 41 1 0.3225 1.6752 -5.4915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275538531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:20 Heat of formation + Delta-G solvation = 18.439570 kcal Electronic energy + Delta-G solvation = -25109.765340 eV Core-core repulsion = 21311.030983 eV Total energy + Delta-G solvation = -3798.734358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.60839 -41.33067 -40.29844 -38.27930 -35.68243 -34.21625 -33.71314 -32.81437 -31.34152 -30.18122 -29.82601 -26.90486 -25.93145 -24.77028 -23.36303 -22.53066 -22.38648 -21.68886 -20.52684 -19.99446 -19.35895 -18.26809 -17.78697 -17.30611 -17.19103 -16.56901 -16.46428 -16.10398 -15.61900 -15.36035 -15.29991 -15.17852 -14.91987 -14.69007 -14.11590 -13.99137 -13.89394 -13.52939 -13.50850 -13.25679 -12.95953 -12.77091 -12.74445 -12.62935 -12.31447 -12.09681 -11.76102 -11.53114 -11.43849 -11.26585 -11.03044 -11.00307 -10.86072 -10.53460 -10.26896 -9.13205 -9.02448 -7.92147 -5.21325 -1.32200 -0.15523 0.28855 0.51339 1.34898 1.46963 1.49402 1.49543 1.59337 1.72229 1.88885 2.03345 2.58712 3.21287 3.41999 3.58730 3.65463 3.79218 3.97536 3.97580 4.03169 4.15199 4.16491 4.31665 4.55967 4.61297 4.71422 4.84186 4.88604 4.91281 4.95062 4.98550 5.00395 5.09774 5.28618 5.41073 5.44654 5.48228 5.55650 5.90439 6.24585 6.28380 6.36743 6.96050 7.35242 8.07422 8.31297 9.31304 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.002197 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.976003 B =12741.793001 C =13604.785336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.068 0.932 4 N -0.699 5.699 5 C 0.598 3.402 6 O -0.561 6.561 7 C -0.305 4.305 8 C 0.131 3.869 9 N -0.475 5.475 10 C 0.150 3.850 11 C -0.016 4.016 12 C -0.119 4.119 13 C -0.227 4.227 14 C 0.012 3.988 15 O -0.180 6.180 16 S 0.203 5.797 17 C 0.167 3.833 18 H 0.062 0.938 19 C -0.156 4.156 20 N -0.729 5.729 21 C -0.231 4.231 22 H 0.081 0.919 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.971 3.029 26 H -0.263 1.263 27 H -0.296 1.296 28 H -0.298 1.298 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.408 0.592 33 H 0.200 0.800 34 H 0.164 0.836 35 H 0.185 0.815 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.373 0.627 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 -15.815 28.034 33.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.086 0.914 4 N -0.351 5.351 5 C 0.384 3.616 6 O -0.441 6.441 7 C -0.430 4.430 8 C -0.030 4.030 9 N -0.190 5.190 10 C -0.119 4.119 11 C -0.069 4.069 12 C -0.144 4.144 13 C -0.246 4.246 14 C -0.058 4.058 15 O -0.076 6.076 16 S 0.463 5.537 17 C 0.058 3.942 18 H 0.080 0.920 19 C -0.216 4.216 20 N -0.369 5.369 21 C -0.363 4.363 22 H 0.099 0.901 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.800 3.200 26 H -0.188 1.188 27 H -0.224 1.224 28 H -0.226 1.226 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.244 0.756 33 H 0.216 0.784 34 H 0.182 0.818 35 H 0.203 0.797 36 H 0.272 0.728 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.205 0.795 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.911 -15.975 27.335 32.891 hybrid contribution -0.390 1.049 -0.929 1.455 sum 8.521 -14.927 26.406 31.507 Atomic orbital electron populations 1.21952 0.94652 1.02343 1.01366 1.21036 0.94470 0.96600 0.83424 0.91375 1.45767 1.66432 1.14077 1.08780 1.16800 0.77116 0.85715 0.81965 1.90850 1.52010 1.16287 1.84963 1.25785 1.18328 0.98903 0.99970 1.22423 0.93928 1.01315 0.85284 1.66412 1.17022 1.00902 1.34686 1.24548 1.00823 0.92639 0.93877 1.18574 1.12227 0.82870 0.93194 1.22295 0.98820 1.00855 0.92447 1.22258 1.07687 0.92043 1.02625 1.25367 0.97784 0.99875 0.82784 1.84066 1.65714 1.19116 1.38675 1.84812 1.56781 1.04580 1.07494 1.20552 0.92987 0.95652 0.84971 0.92005 1.22321 0.97517 1.00767 1.01027 1.42449 1.78419 1.10271 1.05785 1.19610 1.34616 0.94261 0.87777 0.90128 1.25539 1.03125 0.96844 1.01413 1.69832 1.52654 1.10232 1.29267 0.85108 0.76569 0.78318 0.79962 1.18750 1.22383 1.22559 0.91689 0.93032 0.92441 0.75586 0.78384 0.81832 0.79728 0.72829 0.91299 0.93470 0.94589 0.79498 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.33 71.98 0.67 -4.33 16 2 C 0.15 5.10 2.21 45.00 0.10 5.20 16 3 H 0.07 2.65 7.58 -2.39 -0.02 2.64 16 4 N -0.70 -19.23 4.38 -446.73 -1.96 -21.19 16 5 C 0.60 17.65 7.74 86.37 0.67 18.31 16 6 O -0.56 -20.61 16.52 -4.46 -0.07 -20.68 16 7 C -0.31 -7.33 6.50 24.07 0.16 -7.17 16 8 C 0.13 3.01 11.04 84.58 0.93 3.95 16 9 N -0.47 -10.64 10.47 -188.73 -1.98 -12.62 16 10 C 0.15 3.06 7.44 87.09 0.65 3.70 16 11 C -0.02 -0.28 7.21 24.11 0.17 -0.10 16 12 C -0.12 -1.65 10.79 22.43 0.24 -1.41 16 13 C -0.23 -1.79 10.88 22.09 0.24 -1.55 16 14 C 0.01 0.08 12.08 67.06 0.81 0.89 16 15 O -0.18 -2.56 10.67 -6.35 -0.07 -2.63 16 16 S 0.20 3.80 22.52 -56.49 -1.27 2.52 16 17 C 0.17 6.21 2.52 44.99 0.11 6.32 16 18 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 19 C -0.16 -5.31 9.33 71.98 0.67 -4.64 16 20 N -0.73 -35.26 4.43 -322.95 -1.43 -36.69 16 21 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 24 N -0.97 -58.86 13.06 21.65 0.28 -58.57 16 25 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 26 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.29 7.45 -2.38 -0.02 2.28 16 32 H 0.41 9.06 7.55 -92.70 -0.70 8.36 16 33 H 0.20 4.20 8.05 -2.91 -0.02 4.17 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.19 0.38 8.06 -2.91 -0.02 0.35 16 36 H 0.26 -0.79 8.06 -2.91 -0.02 -0.81 16 37 H 0.07 1.84 7.44 -2.39 -0.02 1.83 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.37 19.88 7.58 -92.71 -0.70 19.18 16 41 H 0.25 14.77 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -70.93 372.05 1.95 -68.99 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.32 Total: 29.51 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.73 Total: 3.86 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -5.08 Total: -129.06 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.14 Total: -23.32 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.27 Total: 2.52 kcal Total: -70.93 1.95 -68.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275538531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.426 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds