Wall clock time and date at job start Tue Mar 31 2020 19:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47050 * 2 1 4 4 N 1.46498 * 109.47203 * 120.00368 * 2 1 3 5 5 C 1.36940 * 119.99617 * 274.99770 * 4 2 1 6 6 H 1.07998 * 120.00434 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99648 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99875 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00111 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46830 * 89.99937 * 9 7 5 11 11 H 1.48500 * 109.47285 * 209.99771 * 9 7 5 12 12 H 1.48502 * 109.47077 * 330.00172 * 9 7 5 13 13 C 1.53001 * 109.46779 * 240.00452 * 2 1 3 14 14 H 1.09004 * 109.47108 * 299.99331 * 13 2 1 15 15 C 1.52997 * 109.46743 * 180.02562 * 13 2 1 16 16 N 1.46493 * 109.47621 * 59.99843 * 13 2 1 17 17 C 1.34775 * 120.00398 * 204.99867 * 16 13 2 18 18 O 1.21734 * 119.99732 * 0.02562 * 17 16 13 19 19 C 1.46420 * 120.00443 * 180.02562 * 17 16 13 20 20 C 1.36808 * 126.00061 * 180.02562 * 19 17 16 21 21 N 1.30366 * 115.31041 * 179.97438 * 20 19 17 22 22 C 1.30922 * 117.31841 * 359.97438 * 21 20 19 23 23 C 1.46863 * 125.28700 * 179.97438 * 22 21 20 24 24 C 1.36426 * 125.97149 * 0.02562 * 23 22 21 25 25 C 1.40616 * 106.71356 * 180.02562 * 24 23 22 26 26 C 1.34954 * 107.09478 * 0.02562 * 25 24 23 27 27 O 1.34168 * 108.74027 * 0.24412 * 26 25 24 28 28 S 1.76121 * 109.42286 * 0.24135 * 22 21 20 29 29 H 1.09001 * 109.46649 * 299.99818 * 1 2 3 30 30 H 1.08996 * 109.47115 * 59.99632 * 1 2 3 31 31 H 1.08996 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00374 * 94.99834 * 4 2 1 33 33 H 0.97002 * 120.00362 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47767 * 59.99811 * 15 13 2 35 35 H 1.09005 * 109.47059 * 179.97438 * 15 13 2 36 36 H 1.09001 * 109.47378 * 299.99328 * 15 13 2 37 37 H 0.97004 * 120.00074 * 24.99962 * 16 13 2 38 38 H 1.07998 * 122.34914 * 359.95115 * 20 19 17 39 39 H 1.08005 * 126.64696 * 0.04244 * 24 23 22 40 40 H 1.08003 * 126.45472 * 180.02562 * 25 24 23 41 41 H 1.08002 * 125.62611 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6114 -0.6621 3.5092 8 7 2.7367 -0.0056 4.6431 9 14 3.0557 -2.4746 3.4252 10 1 4.4885 -2.6166 3.0620 11 1 2.8156 -3.1049 4.7482 12 1 2.2161 -3.1429 2.3988 13 6 2.0400 -0.7212 -1.2493 14 1 1.6767 -1.7489 -1.2493 15 6 3.5699 -0.7217 -1.2490 16 7 1.5517 -0.0306 -2.4454 17 6 1.4229 -0.7029 -3.6064 18 8 1.7120 -1.8841 -3.6610 19 6 0.9354 -0.0125 -4.8021 20 6 0.7579 -0.5723 -6.0377 21 7 0.3111 0.2367 -6.9572 22 6 0.0831 1.4774 -6.6066 23 6 -0.4187 2.5320 -7.4971 24 6 -0.7244 2.3866 -8.8187 25 6 -1.1640 3.6428 -9.2726 26 6 -1.1068 4.4869 -8.2211 27 8 -0.6513 3.8146 -7.1531 28 16 0.4790 1.6869 -4.9033 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6318 1.1525 33 1 3.0600 -0.4629 5.4351 34 1 3.9330 -1.2358 -0.3591 35 1 3.9333 -1.2359 -2.1388 36 1 3.9337 0.3058 -1.2488 37 1 1.3210 0.9106 -2.4019 38 1 0.9731 -1.6116 -6.2376 39 1 -0.6446 1.4819 -9.4031 40 1 -1.4867 3.8864 -10.2741 41 1 -1.3783 5.5321 -8.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275538532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:23 Heat of formation + Delta-G solvation = 44.190550 kcal Electronic energy + Delta-G solvation = -25177.110951 eV Core-core repulsion = 21379.493240 eV Total energy + Delta-G solvation = -3797.617712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.09698 -40.32836 -39.33231 -36.94605 -34.16362 -33.67757 -32.32924 -31.77745 -30.25917 -28.99558 -28.93110 -26.15948 -23.99663 -23.45616 -22.45188 -22.00632 -21.20868 -20.43472 -19.77073 -19.07646 -17.91073 -17.57640 -16.75054 -16.73384 -16.20889 -15.50661 -15.27362 -14.72691 -14.52728 -14.39160 -14.11688 -13.93121 -13.51749 -13.46394 -13.39104 -13.07694 -12.99538 -12.53874 -12.24960 -12.00108 -11.87551 -11.42883 -11.17141 -10.95422 -10.83477 -10.62730 -10.47672 -10.34492 -10.19395 -10.08147 -10.01396 -9.82712 -9.63279 -9.18465 -8.93852 -8.49586 -7.35026 -5.81689 -3.18565 -0.54028 0.62280 1.09827 1.15248 1.94538 2.01982 2.42202 2.98584 3.01344 3.36080 3.39578 3.44316 3.80990 4.32566 4.43358 4.53445 4.55441 4.61647 4.84022 5.08331 5.18623 5.31480 5.31796 5.36028 5.43539 5.57962 5.63142 5.65803 5.87557 5.94469 5.97648 6.17482 6.22275 6.31156 6.40900 6.41998 6.59953 6.70688 6.87409 7.08747 7.37397 7.91635 8.02350 8.36364 9.13588 9.86125 10.04761 11.36144 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026253 B = 0.002262 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.289803 B =12372.959224 C =13118.927397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.061 0.939 4 N -0.741 5.741 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.132 3.868 14 H 0.089 0.911 15 C -0.155 4.155 16 N -0.708 5.708 17 C 0.595 3.405 18 O -0.523 6.523 19 C -0.278 4.278 20 C 0.123 3.877 21 N -0.456 5.456 22 C 0.145 3.855 23 C 0.024 3.976 24 C -0.125 4.125 25 C -0.219 4.219 26 C -0.006 4.006 27 O -0.166 6.166 28 S 0.170 5.830 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.396 0.604 38 H 0.195 0.805 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 8.327 -29.015 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.063 3.937 3 H 0.079 0.921 4 N -0.385 5.385 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.028 3.972 14 H 0.107 0.893 15 C -0.214 4.214 16 N -0.359 5.359 17 C 0.379 3.621 18 O -0.401 6.401 19 C -0.403 4.403 20 C -0.036 4.036 21 N -0.171 5.171 22 C -0.125 4.125 23 C -0.029 4.029 24 C -0.149 4.149 25 C -0.238 4.238 26 C -0.077 4.077 27 O -0.061 6.061 28 S 0.430 5.570 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.231 0.769 38 H 0.212 0.788 39 H 0.180 0.820 40 H 0.176 0.824 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.303 8.481 -28.242 30.379 hybrid contribution 0.270 -1.638 -0.213 1.673 sum -7.034 6.843 -28.456 30.100 Atomic orbital electron populations 1.22435 0.98469 1.01274 1.00435 1.20359 0.92371 0.95913 0.85047 0.92143 1.42638 1.79867 1.09358 1.06620 1.19001 1.37373 0.95522 0.85449 0.89115 1.24654 1.01234 0.97491 0.95518 1.69692 1.52309 1.35628 1.00261 0.86600 0.78581 0.86706 0.76969 1.20944 1.21699 1.20193 1.21459 0.94712 0.97689 0.83348 0.89319 1.22081 0.94575 1.02381 1.02320 1.45965 1.66598 1.13722 1.09607 1.16573 0.77925 0.86149 0.81474 1.90866 1.50366 1.14568 1.84338 1.26129 1.15999 0.97396 1.00790 1.22277 0.94965 1.00974 0.85392 1.66355 1.15670 1.00459 1.34651 1.24194 1.02456 0.92471 0.93389 1.18552 1.09437 0.82202 0.92724 1.21995 1.00397 0.99691 0.92826 1.21897 1.07642 0.93170 1.01084 1.24401 1.00660 0.98602 0.83994 1.84063 1.65116 1.19305 1.37655 1.85085 1.57294 1.06469 1.08149 0.91940 0.94391 0.93363 0.80406 0.92987 0.90463 0.93002 0.92430 0.76910 0.78836 0.82038 0.82382 0.76975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.33 37.16 0.35 -2.45 16 2 C 0.17 3.12 2.52 -67.93 -0.17 2.95 16 3 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 4 N -0.74 -16.68 4.23 -53.42 -0.23 -16.91 16 5 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 9 Si 0.88 21.78 27.74 -169.99 -4.71 17.07 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 13 C 0.13 2.11 2.20 -67.94 -0.15 1.96 16 14 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 15 C -0.16 -2.46 9.33 37.16 0.35 -2.12 16 16 N -0.71 -9.48 4.38 -55.20 -0.24 -9.72 16 17 C 0.59 8.38 7.74 -12.97 -0.10 8.28 16 18 O -0.52 -8.96 16.52 5.16 0.09 -8.88 16 19 C -0.28 -3.27 6.50 -36.81 -0.24 -3.51 16 20 C 0.12 1.38 11.04 -18.69 -0.21 1.17 16 21 N -0.46 -5.08 10.47 -11.00 -0.12 -5.19 16 22 C 0.14 1.51 7.44 -14.45 -0.11 1.40 16 23 C 0.02 0.22 7.21 -36.75 -0.26 -0.04 16 24 C -0.12 -0.96 10.79 -39.34 -0.42 -1.38 16 25 C -0.22 -1.20 10.88 -39.85 -0.43 -1.63 16 26 C -0.01 -0.03 12.08 29.57 0.36 0.33 16 27 O -0.17 -1.37 10.67 4.64 0.05 -1.32 16 28 S 0.17 1.66 22.52 -107.50 -2.42 -0.76 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.36 8.18 5.44 -40.82 -0.22 7.95 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.08 1.34 7.44 -51.93 -0.39 0.95 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.50 7.55 -40.82 -0.31 4.20 16 38 H 0.19 1.92 8.05 -52.49 -0.42 1.49 16 39 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.16 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.21 0.20 8.06 -52.49 -0.42 -0.22 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -33.14 368.93 -7.64 -40.78 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.09 Total: 8.95 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.30 Total: -1.69 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.19 Total: -59.72 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.13 Total: -10.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.42 Total: -0.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.14 -7.64 -40.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275538532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.974 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds