Wall clock time and date at job start Tue Mar 31 2020 19:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47050 * 2 1 4 4 N 1.46498 * 109.47203 * 120.00368 * 2 1 3 5 5 C 1.36940 * 119.99617 * 274.99770 * 4 2 1 6 6 H 1.07998 * 120.00434 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99648 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99875 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00111 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46830 * 89.99937 * 9 7 5 11 11 H 1.48500 * 109.47285 * 209.99771 * 9 7 5 12 12 H 1.48502 * 109.47077 * 330.00172 * 9 7 5 13 13 C 1.53001 * 109.46779 * 240.00452 * 2 1 3 14 14 H 1.09004 * 109.47108 * 299.99331 * 13 2 1 15 15 C 1.52997 * 109.46743 * 180.02562 * 13 2 1 16 16 N 1.46493 * 109.47621 * 59.99843 * 13 2 1 17 17 C 1.34775 * 120.00398 * 204.99867 * 16 13 2 18 18 O 1.21734 * 119.99732 * 0.02562 * 17 16 13 19 19 C 1.46420 * 120.00443 * 180.02562 * 17 16 13 20 20 C 1.36808 * 126.00061 * 180.02562 * 19 17 16 21 21 N 1.30366 * 115.31041 * 179.97438 * 20 19 17 22 22 C 1.30922 * 117.31841 * 359.97438 * 21 20 19 23 23 C 1.46863 * 125.28700 * 179.97438 * 22 21 20 24 24 C 1.36426 * 125.97149 * 0.02562 * 23 22 21 25 25 C 1.40616 * 106.71356 * 180.02562 * 24 23 22 26 26 C 1.34954 * 107.09478 * 0.02562 * 25 24 23 27 27 O 1.34168 * 108.74027 * 0.24412 * 26 25 24 28 28 S 1.76121 * 109.42286 * 0.24135 * 22 21 20 29 29 H 1.09001 * 109.46649 * 299.99818 * 1 2 3 30 30 H 1.08996 * 109.47115 * 59.99632 * 1 2 3 31 31 H 1.08996 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00374 * 94.99834 * 4 2 1 33 33 H 0.97002 * 120.00362 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47767 * 59.99811 * 15 13 2 35 35 H 1.09005 * 109.47059 * 179.97438 * 15 13 2 36 36 H 1.09001 * 109.47378 * 299.99328 * 15 13 2 37 37 H 0.97004 * 120.00074 * 24.99962 * 16 13 2 38 38 H 1.07998 * 122.34914 * 359.95115 * 20 19 17 39 39 H 1.08005 * 126.64696 * 0.04244 * 24 23 22 40 40 H 1.08003 * 126.45472 * 180.02562 * 25 24 23 41 41 H 1.08002 * 125.62611 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6114 -0.6621 3.5092 8 7 2.7367 -0.0056 4.6431 9 14 3.0557 -2.4746 3.4252 10 1 4.4885 -2.6166 3.0620 11 1 2.8156 -3.1049 4.7482 12 1 2.2161 -3.1429 2.3988 13 6 2.0400 -0.7212 -1.2493 14 1 1.6767 -1.7489 -1.2493 15 6 3.5699 -0.7217 -1.2490 16 7 1.5517 -0.0306 -2.4454 17 6 1.4229 -0.7029 -3.6064 18 8 1.7120 -1.8841 -3.6610 19 6 0.9354 -0.0125 -4.8021 20 6 0.7579 -0.5723 -6.0377 21 7 0.3111 0.2367 -6.9572 22 6 0.0831 1.4774 -6.6066 23 6 -0.4187 2.5320 -7.4971 24 6 -0.7244 2.3866 -8.8187 25 6 -1.1640 3.6428 -9.2726 26 6 -1.1068 4.4869 -8.2211 27 8 -0.6513 3.8146 -7.1531 28 16 0.4790 1.6869 -4.9033 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6318 1.1525 33 1 3.0600 -0.4629 5.4351 34 1 3.9330 -1.2358 -0.3591 35 1 3.9333 -1.2359 -2.1388 36 1 3.9337 0.3058 -1.2488 37 1 1.3210 0.9106 -2.4019 38 1 0.9731 -1.6116 -6.2376 39 1 -0.6446 1.4819 -9.4031 40 1 -1.4867 3.8864 -10.2741 41 1 -1.3783 5.5321 -8.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275538532.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:22 Heat of formation + Delta-G solvation = 21.456927 kcal Electronic energy + Delta-G solvation = -25178.096755 eV Core-core repulsion = 21379.493240 eV Total energy + Delta-G solvation = -3798.603515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61326 -41.34547 -40.31588 -38.39553 -35.74921 -34.22111 -33.82514 -32.88010 -31.54531 -30.54744 -29.86989 -26.91106 -25.73517 -24.71668 -23.31889 -22.53557 -22.35079 -21.80351 -20.60919 -20.12744 -19.65171 -18.30193 -17.77541 -17.32496 -17.28742 -16.54254 -16.48945 -16.00794 -15.85535 -15.48048 -15.31343 -15.10522 -14.89048 -14.67973 -14.26794 -13.99577 -13.90041 -13.84543 -13.52580 -13.33967 -13.09601 -12.81673 -12.74390 -12.64783 -12.36903 -12.11522 -11.81362 -11.55331 -11.46589 -11.26897 -11.05123 -11.01859 -10.86577 -10.54112 -10.29693 -9.34386 -9.13327 -8.01083 -5.34730 -1.32690 -0.15804 0.28832 0.50973 1.34344 1.40011 1.40689 1.46780 1.47765 1.71630 1.86732 2.02692 2.48808 3.20709 3.30674 3.54996 3.62613 3.64230 3.79635 3.97121 4.01514 4.10045 4.15623 4.25725 4.53685 4.60934 4.66976 4.78912 4.87405 4.88612 4.94545 4.95704 4.98244 5.07833 5.26255 5.35443 5.44176 5.44817 5.78337 5.90060 6.21313 6.23638 6.35815 6.93516 7.07388 7.81929 8.00175 9.19856 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026253 B = 0.002262 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.289803 B =12372.959224 C =13118.927397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 H 0.063 0.937 4 N -0.744 5.744 5 C -0.220 4.220 6 H 0.064 0.936 7 C -0.061 4.061 8 N -0.981 5.981 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.256 1.256 13 C 0.146 3.854 14 H 0.077 0.923 15 C -0.151 4.151 16 N -0.701 5.701 17 C 0.600 3.400 18 O -0.558 6.558 19 C -0.306 4.306 20 C 0.131 3.869 21 N -0.475 5.475 22 C 0.150 3.850 23 C -0.016 4.016 24 C -0.119 4.119 25 C -0.227 4.227 26 C 0.011 3.989 27 O -0.180 6.180 28 S 0.200 5.800 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.365 0.635 33 H 0.257 0.743 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.408 0.592 38 H 0.201 0.799 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 9.291 -31.980 34.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 H 0.081 0.919 4 N -0.388 5.388 5 C -0.351 4.351 6 H 0.082 0.918 7 C -0.252 4.252 8 N -0.632 5.632 9 Si 0.773 3.227 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.180 1.180 13 C 0.041 3.959 14 H 0.096 0.904 15 C -0.209 4.209 16 N -0.352 5.352 17 C 0.386 3.614 18 O -0.439 6.439 19 C -0.430 4.430 20 C -0.029 4.029 21 N -0.191 5.191 22 C -0.119 4.119 23 C -0.069 4.069 24 C -0.144 4.144 25 C -0.246 4.246 26 C -0.059 4.059 27 O -0.076 6.076 28 S 0.461 5.539 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.198 0.802 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.244 0.756 38 H 0.217 0.783 39 H 0.182 0.818 40 H 0.203 0.797 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -8.262 9.466 -31.262 33.693 hybrid contribution 0.438 -1.682 0.456 1.797 sum -7.824 7.784 -30.806 32.724 Atomic orbital electron populations 1.22306 0.97115 1.01256 1.01127 1.20525 0.93139 0.95813 0.84332 0.91921 1.42624 1.80061 1.09440 1.06666 1.18953 1.34794 0.94510 0.86849 0.91803 1.25387 1.02559 1.01947 0.95332 1.69858 1.54717 1.37504 1.01104 0.85556 0.78691 0.81547 0.76884 1.20412 1.22581 1.18040 1.21088 0.94689 0.96905 0.83264 0.90450 1.22026 0.94439 1.02702 1.01769 1.45758 1.66510 1.14143 1.08784 1.16746 0.77050 0.85701 0.81870 1.90844 1.51964 1.16112 1.84948 1.25794 1.18418 0.98779 1.00029 1.22435 0.93856 1.01344 0.85266 1.66414 1.17014 1.00896 1.34734 1.24539 1.00806 0.92603 0.93911 1.18587 1.12322 0.82740 0.93252 1.22294 0.98896 1.00839 0.92384 1.22260 1.07678 0.92107 1.02565 1.25365 0.97680 0.99938 0.82867 1.84066 1.65581 1.18984 1.38974 1.84875 1.56852 1.04587 1.07585 0.93816 0.91116 0.93728 0.80209 0.93446 0.91975 0.92540 0.91681 0.75578 0.78277 0.81794 0.79734 0.72877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.33 71.98 0.67 -4.44 16 2 C 0.17 5.97 2.52 44.99 0.11 6.08 16 3 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.74 -33.04 4.23 -322.93 -1.37 -34.41 16 5 C -0.22 -12.00 10.41 84.03 0.87 -11.13 16 6 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 7 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 8 N -0.98 -61.91 13.97 21.65 0.30 -61.60 16 9 Si 0.95 45.26 27.74 68.60 1.90 47.17 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.26 -11.23 6.52 99.48 0.65 -10.58 16 13 C 0.15 4.48 2.20 44.99 0.10 4.57 16 14 H 0.08 2.62 7.58 -2.38 -0.02 2.60 16 15 C -0.15 -4.64 9.33 71.98 0.67 -3.97 16 16 N -0.70 -17.80 4.38 -446.74 -1.96 -19.75 16 17 C 0.60 16.40 7.74 86.37 0.67 17.07 16 18 O -0.56 -18.91 16.52 -4.46 -0.07 -18.98 16 19 C -0.31 -6.91 6.50 24.07 0.16 -6.76 16 20 C 0.13 2.86 11.04 84.57 0.93 3.79 16 21 N -0.48 -10.24 10.47 -188.73 -1.98 -12.21 16 22 C 0.15 2.97 7.44 87.09 0.65 3.62 16 23 C -0.02 -0.28 7.21 24.11 0.17 -0.10 16 24 C -0.12 -1.61 10.79 22.43 0.24 -1.37 16 25 C -0.23 -1.75 10.88 22.09 0.24 -1.51 16 26 C 0.01 0.08 12.08 67.06 0.81 0.89 16 27 O -0.18 -2.55 10.67 -6.31 -0.07 -2.62 16 28 S 0.20 3.62 22.52 -56.49 -1.27 2.35 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.80 7.45 -2.39 -0.02 1.79 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.36 15.99 5.44 -92.71 -0.50 15.48 16 33 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.06 2.10 7.44 -2.39 -0.02 2.08 16 35 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.41 8.51 7.55 -92.71 -0.70 7.81 16 38 H 0.20 3.91 8.05 -2.91 -0.02 3.89 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.26 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: -1.00 -72.85 368.93 2.08 -70.77 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.18 Total: 25.59 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.77 Total: 3.70 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.00 Total: -127.98 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.14 Total: -21.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.27 Total: 2.35 kcal Total: -72.85 2.08 -70.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275538532.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.228 kcal (2) G-P(sol) polarization free energy of solvation -72.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds