Wall clock time and date at job start Tue Mar 31 2020 19:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47050 * 239.99848 * 2 1 3 5 5 N 1.46506 * 109.46991 * 184.99912 * 4 2 1 6 6 C 1.46497 * 119.99969 * 270.00144 * 5 4 2 7 7 C 1.34778 * 119.99824 * 90.00193 * 5 4 2 8 8 O 1.21630 * 119.99985 * 2.91923 * 7 5 4 9 9 C 1.47271 * 120.00030 * 182.92177 * 7 5 4 10 10 C 1.35076 * 122.43215 * 173.04701 * 9 7 5 11 11 S 1.71002 * 109.14432 * 179.74819 * 10 9 7 12 12 C 1.75992 * 90.59050 * 0.34006 * 11 10 9 13 13 C 1.47873 * 125.31804 * 179.97438 * 12 11 10 14 14 C 1.46863 * 127.14366 * 359.97438 * 13 12 11 15 15 C 1.34300 * 106.00805 * 180.13504 * 14 13 12 16 16 O 1.34180 * 109.05294 * 359.60497 * 15 14 13 17 17 C 1.34001 * 110.80044 * 0.26212 * 16 15 14 18 18 N 1.29872 * 109.36405 * 359.65436 * 12 11 10 19 19 N 1.46505 * 109.46902 * 119.99972 * 2 1 3 20 20 C 1.36932 * 120.00013 * 274.99836 * 19 2 1 21 21 H 1.08002 * 120.00201 * 0.02562 * 20 19 2 22 22 C 1.38804 * 119.99968 * 180.02562 * 20 19 2 23 23 N 1.31618 * 120.00392 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46767 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47150 * 119.99762 * 24 22 20 27 27 H 1.48495 * 109.47518 * 240.00255 * 24 22 20 28 28 H 1.09001 * 109.47168 * 299.99819 * 1 2 3 29 29 H 1.09002 * 109.47179 * 60.00033 * 1 2 3 30 30 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47103 * 65.00018 * 4 2 1 32 32 H 1.09001 * 109.47058 * 304.99875 * 4 2 1 33 33 H 1.09004 * 109.47180 * 263.95806 * 6 5 4 34 34 H 1.08994 * 109.47136 * 23.95971 * 6 5 4 35 35 H 1.08998 * 109.46780 * 143.96371 * 6 5 4 36 36 H 1.08002 * 125.42752 * 0.02562 * 10 9 7 37 37 H 1.07997 * 126.99393 * 0.03222 * 14 13 12 38 38 H 1.08001 * 125.47309 * 179.86924 * 15 14 13 39 39 H 1.07996 * 125.78672 * 180.02562 * 17 16 15 40 40 H 0.97001 * 119.99472 * 95.00444 * 19 2 1 41 41 H 0.97003 * 120.00259 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0758 -1.8987 -0.6115 8 8 3.3844 -2.8040 -0.1852 9 6 5.5419 -1.9742 -0.4949 10 6 6.1643 -2.9547 0.1948 11 16 7.8554 -2.7187 0.1026 12 6 7.6189 -1.2738 -0.8739 13 6 8.6990 -0.4153 -1.4059 14 6 10.1454 -0.5966 -1.2269 15 6 10.7299 0.4202 -1.8810 16 8 9.7797 1.1854 -2.4398 17 6 8.5594 0.7033 -2.1678 18 7 6.3478 -1.0831 -1.0599 19 7 2.0183 -0.6906 1.1962 20 6 2.1491 -0.0075 2.3758 21 1 1.8919 1.0403 2.4244 22 6 2.6122 -0.6617 3.5090 23 7 2.9262 -1.9386 3.4497 24 14 2.7913 0.2703 5.1180 25 1 2.3763 1.6825 4.9208 26 1 1.9310 -0.3582 6.1525 27 1 4.2084 0.2275 5.5598 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -0.1584 -2.1370 32 1 1.6054 -1.7198 -1.2951 33 1 4.6314 -0.0422 -2.7730 34 1 3.7688 1.1653 -1.7901 35 1 5.2236 0.3678 -1.1453 36 1 5.6723 -3.7619 0.7172 37 1 10.6385 -1.3860 -0.6791 38 1 11.7939 0.5919 -1.9502 39 1 7.6238 1.1300 -2.4977 40 1 2.2490 -1.6318 1.1526 41 1 3.2502 -2.3956 4.2416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283691586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:35 Heat of formation + Delta-G solvation = 59.420412 kcal Electronic energy + Delta-G solvation = -26689.589712 eV Core-core repulsion = 22892.632417 eV Total energy + Delta-G solvation = -3796.957295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.63261 -40.26101 -38.31928 -35.89923 -34.22327 -33.58270 -31.86309 -30.77632 -29.13596 -28.64078 -27.13029 -26.14737 -24.99706 -23.58618 -22.58517 -21.91569 -20.21502 -19.57468 -18.88415 -18.23880 -17.65282 -17.02091 -16.24638 -16.04763 -15.54934 -15.32042 -15.18260 -14.68657 -14.19423 -13.97740 -13.67791 -13.32270 -13.23900 -13.09805 -12.79077 -12.48670 -12.44175 -12.23914 -12.10227 -11.98012 -11.58215 -11.35207 -11.15067 -10.79332 -10.60578 -10.52015 -10.29830 -9.96694 -9.66493 -9.52851 -9.46816 -9.28946 -9.14630 -8.79655 -8.25841 -7.92863 -6.77230 -5.58924 -2.87772 0.44009 1.26203 1.55979 1.70487 1.94249 2.77491 2.78618 3.47986 3.50211 3.53754 3.55847 3.85399 3.96274 4.54350 4.65469 4.69334 4.94183 5.18979 5.36685 5.46312 5.53758 5.57550 5.64069 5.67601 5.75126 5.80483 5.95116 6.00809 6.03805 6.09519 6.15459 6.34628 6.42067 6.52368 6.73908 6.79409 6.88593 7.05497 7.23019 7.52485 7.81490 7.93572 8.57725 8.78252 9.70293 10.33385 10.71644 11.61766 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003900 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.549739 B = 7177.709124 C = 7906.064625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.044 0.956 4 C 0.110 3.890 5 N -0.591 5.591 6 C 0.081 3.919 7 C 0.599 3.401 8 O -0.515 6.515 9 C 0.028 3.972 10 C -0.201 4.201 11 S 0.166 5.834 12 C 0.111 3.889 13 C -0.127 4.127 14 C -0.198 4.198 15 C -0.031 4.031 16 O -0.178 6.178 17 C 0.029 3.971 18 N -0.431 5.431 19 N -0.721 5.721 20 C -0.235 4.235 21 H 0.065 0.935 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.898 3.102 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.294 1.294 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.193 0.807 37 H 0.156 0.844 38 H 0.207 0.793 39 H 0.216 0.784 40 H 0.397 0.603 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.264 2.942 -14.980 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.014 4.014 5 N -0.323 5.323 6 C -0.062 4.062 7 C 0.384 3.616 8 O -0.390 6.390 9 C -0.106 4.106 10 C -0.343 4.343 11 S 0.424 5.576 12 C -0.164 4.164 13 C -0.132 4.132 14 C -0.218 4.218 15 C -0.097 4.097 16 O -0.073 6.073 17 C -0.044 4.044 18 N -0.148 5.148 19 N -0.367 5.367 20 C -0.367 4.367 21 H 0.083 0.917 22 C -0.209 4.209 23 N -0.570 5.570 24 Si 0.729 3.271 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.222 1.222 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.210 0.790 37 H 0.173 0.827 38 H 0.224 0.776 39 H 0.232 0.768 40 H 0.235 0.765 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.611 2.654 -14.671 21.587 hybrid contribution -0.895 0.138 1.307 1.590 sum 14.716 2.792 -13.364 20.073 Atomic orbital electron populations 1.22402 0.99040 1.00996 0.99932 1.20653 0.92019 0.95603 0.87475 0.93843 1.21894 0.79005 1.02173 0.98310 1.47311 1.06655 1.20757 1.57582 1.22149 0.96343 0.89307 0.98448 1.16901 0.84549 0.82508 0.77672 1.90809 1.62555 1.38471 1.47149 1.20165 0.95919 0.93204 1.01335 1.26487 0.97675 1.05389 1.04742 1.83597 1.03381 1.23104 1.47474 1.24915 0.92330 0.97745 1.01458 1.19044 0.90716 0.97801 1.05619 1.22784 0.91411 1.02043 1.05587 1.23871 0.94184 0.92309 0.99350 1.83914 1.14798 1.48110 1.60480 1.24316 0.87051 0.94484 0.98535 1.67395 1.00717 1.25001 1.21671 1.42688 1.77628 1.11642 1.04712 1.19250 1.36145 0.93654 0.87617 0.91656 1.24710 1.02649 0.95915 0.97672 1.69751 1.50761 1.08384 1.28081 0.86253 0.77155 0.78851 0.84802 1.20730 1.21994 1.22166 0.92648 0.94577 0.93342 0.90937 0.90194 0.93592 0.92449 0.88251 0.78989 0.82668 0.77616 0.76801 0.76500 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.49 37.16 0.35 -2.74 16 2 C 0.15 3.26 3.20 -67.93 -0.22 3.04 16 3 H 0.04 0.92 8.08 -51.93 -0.42 0.51 16 4 C 0.11 1.99 5.12 -4.04 -0.02 1.97 16 5 N -0.59 -11.10 2.77 -182.90 -0.51 -11.60 16 6 C 0.08 1.21 9.44 59.85 0.57 1.78 16 7 C 0.60 12.81 6.86 -12.59 -0.09 12.73 16 8 O -0.51 -12.74 14.15 5.25 0.07 -12.67 16 9 C 0.03 0.53 6.45 -84.92 -0.55 -0.02 16 10 C -0.20 -3.48 10.56 29.61 0.31 -3.16 16 11 S 0.17 2.17 23.07 -107.50 -2.48 -0.31 16 12 C 0.11 1.54 7.46 -14.44 -0.11 1.43 16 13 C -0.13 -1.43 6.32 -103.25 -0.65 -2.09 16 14 C -0.20 -1.74 11.04 -37.48 -0.41 -2.15 16 15 C -0.03 -0.22 12.04 29.34 0.35 0.13 16 16 O -0.18 -1.59 10.54 6.85 0.07 -1.52 16 17 C 0.03 0.28 12.05 29.95 0.36 0.64 16 18 N -0.43 -6.89 6.64 -8.11 -0.05 -6.95 16 19 N -0.72 -19.44 4.52 -53.43 -0.24 -19.68 16 20 C -0.23 -6.88 9.93 -15.06 -0.15 -7.03 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.92 -29.27 13.06 55.49 0.72 -28.55 16 24 Si 0.90 23.38 29.55 -169.99 -5.02 18.35 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 32 H 0.08 1.56 7.38 -51.93 -0.38 1.17 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.76 8.03 -51.93 -0.42 0.35 16 35 H 0.10 1.59 5.25 -51.93 -0.27 1.32 16 36 H 0.19 3.40 8.00 -52.49 -0.42 2.98 16 37 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.21 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.22 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.40 11.64 5.14 -40.82 -0.21 11.43 16 41 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -36.51 363.94 -7.35 -43.85 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.05 Total: 9.54 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -0.35 Total: 4.04 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.08 Total: -66.78 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.15 Total: -14.19 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.48 Total: -0.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.51 -7.35 -43.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283691586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.274 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds