Wall clock time and date at job start Tue Mar 31 2020 19:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47050 * 239.99848 * 2 1 3 5 5 N 1.46506 * 109.46991 * 184.99912 * 4 2 1 6 6 C 1.46497 * 119.99969 * 270.00144 * 5 4 2 7 7 C 1.34778 * 119.99824 * 90.00193 * 5 4 2 8 8 O 1.21630 * 119.99985 * 2.91923 * 7 5 4 9 9 C 1.47271 * 120.00030 * 182.92177 * 7 5 4 10 10 C 1.35076 * 122.43215 * 173.04701 * 9 7 5 11 11 S 1.71002 * 109.14432 * 179.74819 * 10 9 7 12 12 C 1.75992 * 90.59050 * 0.34006 * 11 10 9 13 13 C 1.47873 * 125.31804 * 179.97438 * 12 11 10 14 14 C 1.46863 * 127.14366 * 359.97438 * 13 12 11 15 15 C 1.34300 * 106.00805 * 180.13504 * 14 13 12 16 16 O 1.34180 * 109.05294 * 359.60497 * 15 14 13 17 17 C 1.34001 * 110.80044 * 0.26212 * 16 15 14 18 18 N 1.29872 * 109.36405 * 359.65436 * 12 11 10 19 19 N 1.46505 * 109.46902 * 119.99972 * 2 1 3 20 20 C 1.36932 * 120.00013 * 274.99836 * 19 2 1 21 21 H 1.08002 * 120.00201 * 0.02562 * 20 19 2 22 22 C 1.38804 * 119.99968 * 180.02562 * 20 19 2 23 23 N 1.31618 * 120.00392 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46767 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47150 * 119.99762 * 24 22 20 27 27 H 1.48495 * 109.47518 * 240.00255 * 24 22 20 28 28 H 1.09001 * 109.47168 * 299.99819 * 1 2 3 29 29 H 1.09002 * 109.47179 * 60.00033 * 1 2 3 30 30 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47103 * 65.00018 * 4 2 1 32 32 H 1.09001 * 109.47058 * 304.99875 * 4 2 1 33 33 H 1.09004 * 109.47180 * 263.95806 * 6 5 4 34 34 H 1.08994 * 109.47136 * 23.95971 * 6 5 4 35 35 H 1.08998 * 109.46780 * 143.96371 * 6 5 4 36 36 H 1.08002 * 125.42752 * 0.02562 * 10 9 7 37 37 H 1.07997 * 126.99393 * 0.03222 * 14 13 12 38 38 H 1.08001 * 125.47309 * 179.86924 * 15 14 13 39 39 H 1.07996 * 125.78672 * 180.02562 * 17 16 15 40 40 H 0.97001 * 119.99472 * 95.00444 * 19 2 1 41 41 H 0.97003 * 120.00259 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7612 7 6 4.0758 -1.8987 -0.6115 8 8 3.3844 -2.8040 -0.1852 9 6 5.5419 -1.9742 -0.4949 10 6 6.1643 -2.9547 0.1948 11 16 7.8554 -2.7187 0.1026 12 6 7.6189 -1.2738 -0.8739 13 6 8.6990 -0.4153 -1.4059 14 6 10.1454 -0.5966 -1.2269 15 6 10.7299 0.4202 -1.8810 16 8 9.7797 1.1854 -2.4398 17 6 8.5594 0.7033 -2.1678 18 7 6.3478 -1.0831 -1.0599 19 7 2.0183 -0.6906 1.1962 20 6 2.1491 -0.0075 2.3758 21 1 1.8919 1.0403 2.4244 22 6 2.6122 -0.6617 3.5090 23 7 2.9262 -1.9386 3.4497 24 14 2.7913 0.2703 5.1180 25 1 2.3763 1.6825 4.9208 26 1 1.9310 -0.3582 6.1525 27 1 4.2084 0.2275 5.5598 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -0.1584 -2.1370 32 1 1.6054 -1.7198 -1.2951 33 1 4.6314 -0.0422 -2.7730 34 1 3.7688 1.1653 -1.7901 35 1 5.2236 0.3678 -1.1453 36 1 5.6723 -3.7619 0.7172 37 1 10.6385 -1.3860 -0.6791 38 1 11.7939 0.5919 -1.9502 39 1 7.6238 1.1300 -2.4977 40 1 2.2490 -1.6318 1.1526 41 1 3.2502 -2.3956 4.2416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283691586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:34 Heat of formation + Delta-G solvation = 34.626308 kcal Electronic energy + Delta-G solvation = -26690.664865 eV Core-core repulsion = 22892.632417 eV Total energy + Delta-G solvation = -3798.032448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.31764 -41.62558 -39.72335 -37.60309 -35.94931 -34.43653 -33.85542 -31.69935 -30.63484 -30.04885 -28.52892 -27.47555 -26.24564 -25.65494 -23.85175 -22.59318 -21.58448 -20.83276 -20.10775 -19.59707 -19.06943 -18.51349 -17.44304 -16.99683 -16.89516 -16.80945 -16.58247 -16.09178 -15.59143 -15.48882 -15.22485 -14.72173 -14.43235 -14.22117 -14.04778 -13.82557 -13.77622 -13.55627 -13.50724 -13.17632 -13.09073 -12.88380 -12.82897 -12.72915 -12.41101 -12.15612 -11.85379 -11.62026 -11.50105 -11.13996 -10.96164 -10.65160 -10.45266 -9.97260 -9.50731 -9.17802 -8.92225 -7.86177 -5.15415 -0.70435 0.14627 0.50027 0.58800 1.10111 1.40325 1.42144 1.51626 1.79285 2.09815 2.16195 2.49718 2.55726 2.81892 3.43316 3.66766 3.87182 3.92043 4.05146 4.16075 4.18625 4.25023 4.44718 4.49214 4.56014 4.62575 4.70012 4.75755 4.83781 4.90304 4.92861 5.07944 5.13758 5.24263 5.28676 5.41576 5.48313 5.53884 5.77836 6.10391 6.30147 6.33364 6.50243 7.23808 7.40466 8.24164 8.47229 9.35665 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003900 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.549739 B = 7177.709124 C = 7906.064625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.047 0.953 4 C 0.113 3.887 5 N -0.591 5.591 6 C 0.079 3.921 7 C 0.584 3.416 8 O -0.566 6.566 9 C 0.007 3.993 10 C -0.239 4.239 11 S 0.239 5.761 12 C 0.115 3.885 13 C -0.162 4.162 14 C -0.214 4.214 15 C -0.015 4.015 16 O -0.180 6.180 17 C 0.040 3.960 18 N -0.440 5.440 19 N -0.739 5.739 20 C -0.234 4.234 21 H 0.071 0.929 22 C -0.078 4.078 23 N -0.961 5.961 24 Si 0.965 3.035 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.297 1.297 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.123 0.877 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.249 0.751 39 H 0.230 0.770 40 H 0.383 0.617 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.220 5.617 -16.575 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.065 0.935 4 C -0.010 4.010 5 N -0.321 5.321 6 C -0.063 4.063 7 C 0.370 3.630 8 O -0.445 6.445 9 C -0.128 4.128 10 C -0.382 4.382 11 S 0.499 5.501 12 C -0.161 4.161 13 C -0.167 4.167 14 C -0.234 4.234 15 C -0.080 4.080 16 O -0.075 6.075 17 C -0.034 4.034 18 N -0.157 5.157 19 N -0.383 5.383 20 C -0.366 4.366 21 H 0.089 0.911 22 C -0.271 4.271 23 N -0.612 5.612 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.223 1.223 27 H -0.224 1.224 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.141 0.859 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.191 0.809 37 H 0.187 0.813 38 H 0.265 0.735 39 H 0.246 0.754 40 H 0.219 0.781 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.568 5.400 -16.319 24.579 hybrid contribution -1.381 -0.602 1.671 2.249 sum 16.188 4.798 -14.648 22.352 Atomic orbital electron populations 1.22234 0.97073 1.00654 1.01301 1.20978 0.93330 0.95441 0.86704 0.93475 1.21922 0.78837 1.01538 0.98715 1.47508 1.07246 1.20759 1.56609 1.22326 0.95795 0.88987 0.99168 1.17435 0.85716 0.82588 0.77227 1.90758 1.63926 1.40380 1.49466 1.20028 0.95257 0.94620 1.02872 1.26565 1.00806 1.05306 1.05512 1.83179 0.99181 1.21794 1.45990 1.25455 0.92433 0.97931 1.00231 1.19240 0.91243 0.98697 1.07505 1.23034 0.90169 1.03424 1.06757 1.24673 0.95416 0.90773 0.97173 1.83956 1.14823 1.48315 1.60435 1.24632 0.87944 0.93643 0.97182 1.67389 1.01221 1.24600 1.22485 1.42949 1.78068 1.11281 1.05958 1.19635 1.34460 0.93904 0.88635 0.91081 1.25523 1.03526 0.96815 1.01188 1.69953 1.52591 1.10154 1.28538 0.85187 0.76600 0.78304 0.80428 1.18941 1.22258 1.22419 0.94450 0.89917 0.94558 0.85913 0.92110 0.91184 0.90367 0.89247 0.80866 0.81262 0.73512 0.75410 0.78149 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 9.49 71.98 0.68 -4.91 16 2 C 0.14 6.05 3.20 44.99 0.14 6.19 16 3 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 4 C 0.11 4.01 5.12 86.38 0.44 4.45 16 5 N -0.59 -22.17 2.77 -850.83 -2.36 -24.53 16 6 C 0.08 2.24 9.44 127.77 1.21 3.45 16 7 C 0.58 26.20 6.86 86.62 0.59 26.79 16 8 O -0.57 -30.11 14.15 -4.13 -0.06 -30.17 16 9 C 0.01 0.29 6.45 40.65 0.26 0.55 16 10 C -0.24 -8.81 10.56 67.09 0.71 -8.10 16 11 S 0.24 6.19 23.07 -56.49 -1.30 4.89 16 12 C 0.11 3.10 7.46 87.54 0.65 3.76 16 13 C -0.16 -3.35 6.32 -18.97 -0.12 -3.47 16 14 C -0.21 -3.15 11.04 23.63 0.26 -2.88 16 15 C -0.01 -0.15 12.04 66.92 0.81 0.65 16 16 O -0.18 -2.64 10.54 1.58 0.02 -2.62 16 17 C 0.04 0.68 12.05 67.31 0.81 1.49 16 18 N -0.44 -14.09 6.64 -179.58 -1.19 -15.28 16 19 N -0.74 -40.79 4.52 -322.94 -1.46 -42.25 16 20 C -0.23 -13.91 9.93 84.03 0.83 -13.07 16 21 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 23 N -0.96 -63.64 13.06 21.65 0.28 -63.35 16 24 Si 0.96 49.04 29.55 68.60 2.03 51.06 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 27 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.12 3.09 8.07 -2.39 -0.02 3.07 16 32 H 0.06 2.41 7.38 -2.39 -0.02 2.39 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.08 1.86 8.03 -2.39 -0.02 1.84 16 35 H 0.09 2.78 5.25 -2.39 -0.01 2.77 16 36 H 0.17 6.86 8.00 -2.91 -0.02 6.83 16 37 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.25 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.23 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.38 23.51 5.14 -92.71 -0.48 23.03 16 41 H 0.24 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -83.94 363.94 4.30 -79.64 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.59 Total: 32.06 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 7.75 Total: 10.55 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -4.73 Total: -145.42 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.04 Total: -32.79 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.06 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.30 Total: 4.89 kcal Total: -83.94 4.30 -79.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283691586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.269 kcal (2) G-P(sol) polarization free energy of solvation -83.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds