Wall clock time and date at job start Tue Mar 31 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47047 * 2 1 4 4 H 1.08994 * 109.47091 * 304.99853 * 3 2 1 5 5 C 1.52994 * 109.47218 * 184.99760 * 3 2 1 6 6 N 1.46498 * 109.47474 * 185.00141 * 5 3 2 7 7 C 1.34769 * 120.00504 * 179.97438 * 6 5 3 8 8 O 1.21639 * 120.00069 * 0.02562 * 7 6 5 9 9 C 1.47269 * 120.00321 * 180.02562 * 7 6 5 10 10 C 1.35081 * 122.43156 * 180.02562 * 9 7 6 11 11 S 1.71005 * 109.14360 * 179.75078 * 10 9 7 12 12 C 1.75997 * 90.59216 * 0.33873 * 11 10 9 13 13 C 1.47872 * 125.32065 * 179.91654 * 12 11 10 14 14 C 1.46857 * 127.14035 * 359.97438 * 13 12 11 15 15 C 1.34305 * 106.00824 * 180.10680 * 14 13 12 16 16 O 1.34179 * 109.04914 * 359.63029 * 15 14 13 17 17 C 1.33994 * 110.80425 * 0.24454 * 16 15 14 18 18 N 1.29871 * 109.35866 * 359.65435 * 12 11 10 19 19 N 1.46502 * 109.46805 * 65.00025 * 3 2 1 20 20 C 1.36942 * 119.99814 * 274.99718 * 19 3 2 21 21 H 1.07998 * 120.00024 * 0.02562 * 20 19 3 22 22 C 1.38814 * 119.99866 * 179.97438 * 20 19 3 23 23 N 1.31622 * 119.99787 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99954 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47024 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46834 * 120.00581 * 24 22 20 27 27 H 1.48496 * 109.47193 * 240.00430 * 24 22 20 28 28 H 1.09000 * 109.47288 * 300.00047 * 1 2 3 29 29 H 1.09004 * 109.46950 * 60.00276 * 1 2 3 30 30 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47445 * 240.00399 * 2 1 3 32 32 H 1.08998 * 109.47564 * 120.00015 * 2 1 3 33 33 H 1.08996 * 109.47140 * 65.00094 * 5 3 2 34 34 H 1.09003 * 109.47660 * 305.00329 * 5 3 2 35 35 H 0.97004 * 119.99645 * 0.02562 * 6 5 3 36 36 H 1.08001 * 125.43097 * 0.02562 * 10 9 7 37 37 H 1.07999 * 126.99945 * 359.97438 * 14 13 12 38 38 H 1.08002 * 125.47797 * 179.90406 * 15 14 13 39 39 H 1.08001 * 125.79307 * 180.02562 * 17 16 15 40 40 H 0.96994 * 120.00280 * 95.00029 * 19 3 2 41 41 H 0.97003 * 119.99518 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5647 1.4444 -0.1257 6 7 4.0630 2.8169 -0.0059 7 6 5.3856 3.0631 -0.0857 8 8 6.1657 2.1457 -0.2576 9 6 5.8865 4.4427 0.0353 10 6 7.2010 4.7451 -0.0377 11 16 7.3982 6.4347 0.1378 12 6 5.6588 6.6379 0.3133 13 6 4.9656 7.9271 0.5229 14 6 5.5790 9.2576 0.6236 15 6 4.5663 10.1190 0.8139 16 8 3.4098 9.4387 0.8289 17 6 3.6265 8.1277 0.6567 18 7 5.0789 5.4793 0.2245 19 7 1.6524 2.0975 1.2519 20 6 0.4155 2.6735 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0480 3.2936 2.5551 23 7 0.8886 3.3283 3.5674 24 14 -1.6394 4.0787 2.7149 25 1 -2.3890 3.9037 1.4450 26 1 -2.3848 3.4288 3.8228 27 1 -1.4861 5.5271 3.0042 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8498 1.0378 -1.0959 34 1 3.9954 0.8312 0.6659 35 1 3.4409 3.5484 0.1316 36 1 7.9997 4.0339 -0.1878 37 1 6.6307 9.4950 0.5599 38 1 4.6662 11.1880 0.9311 39 1 2.8671 7.3603 0.6284 40 1 2.2718 2.1232 1.9978 41 1 0.6319 3.7619 4.3962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318581748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:48 Heat of formation + Delta-G solvation = 29.156843 kcal Electronic energy + Delta-G solvation = -25830.159402 eV Core-core repulsion = 22031.889780 eV Total energy + Delta-G solvation = -3798.269622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56246 -40.25926 -38.42530 -36.63940 -33.68766 -33.58356 -32.33706 -30.84838 -29.75069 -29.19621 -28.14910 -25.80570 -24.08634 -23.15536 -22.01272 -21.85614 -20.38114 -19.96792 -19.09703 -18.72923 -17.55525 -17.23238 -16.46365 -16.16485 -15.57540 -15.44027 -15.15080 -14.93519 -14.30525 -14.10395 -13.77940 -13.63495 -13.35738 -13.16096 -13.08868 -12.97626 -12.58732 -12.37393 -12.11585 -11.99856 -11.43063 -10.95865 -10.88238 -10.73638 -10.59443 -10.42383 -10.17440 -10.02391 -9.98792 -9.76842 -9.65545 -9.51690 -9.21234 -8.93914 -8.64136 -8.28158 -7.00569 -5.78504 -3.07663 0.27443 1.08358 1.50387 1.56179 1.86249 2.71205 2.88264 3.40387 3.47035 3.49016 3.51637 3.63041 3.86030 4.56102 4.62491 4.65398 4.95507 5.14305 5.23987 5.30943 5.43162 5.46943 5.52040 5.58494 5.87494 5.94346 5.95928 5.98276 5.98668 6.08615 6.17592 6.44362 6.56215 6.59506 6.61976 6.87149 6.89881 7.03958 7.25788 7.39871 7.69245 7.99371 8.38187 8.52707 9.50340 10.05491 10.41454 11.43327 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.004132 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.316778 B = 6775.439987 C = 9427.122212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.690 5.690 7 C 0.586 3.414 8 O -0.551 6.551 9 C 0.026 3.974 10 C -0.223 4.223 11 S 0.164 5.836 12 C 0.137 3.863 13 C -0.144 4.144 14 C -0.198 4.198 15 C -0.032 4.032 16 O -0.175 6.175 17 C 0.050 3.950 18 N -0.434 5.434 19 N -0.721 5.721 20 C -0.235 4.235 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.292 1.292 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.420 0.580 36 H 0.190 0.810 37 H 0.155 0.845 38 H 0.207 0.793 39 H 0.221 0.779 40 H 0.385 0.615 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 10.765 -8.115 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.012 4.012 6 N -0.340 5.340 7 C 0.369 3.631 8 O -0.430 6.430 9 C -0.110 4.110 10 C -0.365 4.365 11 S 0.422 5.578 12 C -0.139 4.139 13 C -0.149 4.149 14 C -0.219 4.219 15 C -0.098 4.098 16 O -0.069 6.069 17 C -0.024 4.024 18 N -0.149 5.149 19 N -0.363 5.363 20 C -0.366 4.366 21 H 0.091 0.909 22 C -0.207 4.207 23 N -0.576 5.576 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.258 0.742 36 H 0.207 0.793 37 H 0.173 0.827 38 H 0.224 0.776 39 H 0.238 0.762 40 H 0.219 0.781 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.995 10.885 -8.190 18.150 hybrid contribution -1.030 -0.327 0.504 1.192 sum 10.965 10.557 -7.686 17.052 Atomic orbital electron populations 1.21768 0.95707 0.99606 1.03266 1.22067 0.96983 0.98350 1.00025 1.20559 0.89750 0.92865 0.91527 0.92806 1.21755 0.95863 0.82308 1.01245 1.45826 1.06712 1.11217 1.70285 1.17112 0.83000 0.85657 0.77350 1.90774 1.56475 1.44357 1.51372 1.20202 0.89308 0.94484 1.06988 1.26424 1.01309 1.00905 1.07908 1.83650 1.08931 0.99843 1.65346 1.24776 0.92334 0.93546 1.03290 1.19017 0.92931 0.89553 1.13429 1.22718 1.00451 0.90430 1.08265 1.23885 0.82160 0.98260 1.05494 1.83956 1.34053 1.18770 1.70159 1.24592 0.96969 0.82756 0.98072 1.67054 1.35961 0.97247 1.14618 1.42455 1.16802 1.65816 1.11221 1.19238 0.91817 1.27638 0.97937 0.90876 1.24719 0.97936 1.01610 0.96410 1.69681 1.35026 1.48933 1.03933 0.86219 0.84240 0.78927 0.77422 1.20568 1.22009 1.21919 0.89646 0.94126 0.94891 0.93841 0.92502 0.91643 0.91595 0.74202 0.79296 0.82729 0.77624 0.76228 0.78081 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.09 2.59 -67.93 -0.18 2.91 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.11 1.99 5.23 -4.05 -0.02 1.97 16 6 N -0.69 -12.66 5.38 -61.44 -0.33 -12.99 16 7 C 0.59 10.81 7.79 -12.59 -0.10 10.72 16 8 O -0.55 -11.08 16.65 5.24 0.09 -11.00 16 9 C 0.03 0.43 6.64 -84.92 -0.56 -0.14 16 10 C -0.22 -3.01 10.56 29.61 0.31 -2.69 16 11 S 0.16 1.78 23.07 -107.50 -2.48 -0.70 16 12 C 0.14 1.89 7.46 -14.44 -0.11 1.78 16 13 C -0.14 -1.79 6.32 -103.25 -0.65 -2.44 16 14 C -0.20 -1.85 11.04 -37.48 -0.41 -2.27 16 15 C -0.03 -0.26 12.04 29.34 0.35 0.09 16 16 O -0.17 -1.96 10.54 6.87 0.07 -1.89 16 17 C 0.05 0.62 12.05 29.95 0.36 0.98 16 18 N -0.43 -7.04 10.03 -8.11 -0.08 -7.12 16 19 N -0.72 -16.70 4.51 -53.42 -0.24 -16.94 16 20 C -0.24 -6.00 7.75 -15.06 -0.12 -6.12 16 21 H 0.07 1.83 7.32 -52.49 -0.38 1.45 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 24 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H 0.08 1.81 5.99 -51.93 -0.31 1.50 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.42 8.09 7.61 -40.82 -0.31 7.78 16 36 H 0.19 2.26 7.99 -52.49 -0.42 1.84 16 37 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.22 2.69 8.06 -52.49 -0.42 2.27 16 40 H 0.39 9.86 7.80 -40.82 -0.32 9.54 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -31.19 370.02 -7.83 -39.02 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -5.10 Total: 16.07 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.03 Total: -0.35 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.07 Total: -63.25 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.16 Total: -12.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.48 Total: -0.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.19 -7.83 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318581748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.175 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds