Wall clock time and date at job start Tue Mar 31 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47047 * 2 1 4 4 H 1.08994 * 109.47091 * 304.99853 * 3 2 1 5 5 C 1.52994 * 109.47218 * 184.99760 * 3 2 1 6 6 N 1.46498 * 109.47474 * 185.00141 * 5 3 2 7 7 C 1.34769 * 120.00504 * 179.97438 * 6 5 3 8 8 O 1.21639 * 120.00069 * 0.02562 * 7 6 5 9 9 C 1.47269 * 120.00321 * 180.02562 * 7 6 5 10 10 C 1.35081 * 122.43156 * 180.02562 * 9 7 6 11 11 S 1.71005 * 109.14360 * 179.75078 * 10 9 7 12 12 C 1.75997 * 90.59216 * 0.33873 * 11 10 9 13 13 C 1.47872 * 125.32065 * 179.91654 * 12 11 10 14 14 C 1.46857 * 127.14035 * 359.97438 * 13 12 11 15 15 C 1.34305 * 106.00824 * 180.10680 * 14 13 12 16 16 O 1.34179 * 109.04914 * 359.63029 * 15 14 13 17 17 C 1.33994 * 110.80425 * 0.24454 * 16 15 14 18 18 N 1.29871 * 109.35866 * 359.65435 * 12 11 10 19 19 N 1.46502 * 109.46805 * 65.00025 * 3 2 1 20 20 C 1.36942 * 119.99814 * 274.99718 * 19 3 2 21 21 H 1.07998 * 120.00024 * 0.02562 * 20 19 3 22 22 C 1.38814 * 119.99866 * 179.97438 * 20 19 3 23 23 N 1.31622 * 119.99787 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99954 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47024 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46834 * 120.00581 * 24 22 20 27 27 H 1.48496 * 109.47193 * 240.00430 * 24 22 20 28 28 H 1.09000 * 109.47288 * 300.00047 * 1 2 3 29 29 H 1.09004 * 109.46950 * 60.00276 * 1 2 3 30 30 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47445 * 240.00399 * 2 1 3 32 32 H 1.08998 * 109.47564 * 120.00015 * 2 1 3 33 33 H 1.08996 * 109.47140 * 65.00094 * 5 3 2 34 34 H 1.09003 * 109.47660 * 305.00329 * 5 3 2 35 35 H 0.97004 * 119.99645 * 0.02562 * 6 5 3 36 36 H 1.08001 * 125.43097 * 0.02562 * 10 9 7 37 37 H 1.07999 * 126.99945 * 359.97438 * 14 13 12 38 38 H 1.08002 * 125.47797 * 179.90406 * 15 14 13 39 39 H 1.08001 * 125.79307 * 180.02562 * 17 16 15 40 40 H 0.96994 * 120.00280 * 95.00029 * 19 3 2 41 41 H 0.97003 * 119.99518 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5647 1.4444 -0.1257 6 7 4.0630 2.8169 -0.0059 7 6 5.3856 3.0631 -0.0857 8 8 6.1657 2.1457 -0.2576 9 6 5.8865 4.4427 0.0353 10 6 7.2010 4.7451 -0.0377 11 16 7.3982 6.4347 0.1378 12 6 5.6588 6.6379 0.3133 13 6 4.9656 7.9271 0.5229 14 6 5.5790 9.2576 0.6236 15 6 4.5663 10.1190 0.8139 16 8 3.4098 9.4387 0.8289 17 6 3.6265 8.1277 0.6567 18 7 5.0789 5.4793 0.2245 19 7 1.6524 2.0975 1.2519 20 6 0.4155 2.6735 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0480 3.2936 2.5551 23 7 0.8886 3.3283 3.5674 24 14 -1.6394 4.0787 2.7149 25 1 -2.3890 3.9037 1.4450 26 1 -2.3848 3.4288 3.8228 27 1 -1.4861 5.5271 3.0042 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8498 1.0378 -1.0959 34 1 3.9954 0.8312 0.6659 35 1 3.4409 3.5484 0.1316 36 1 7.9997 4.0339 -0.1878 37 1 6.6307 9.4950 0.5599 38 1 4.6662 11.1880 0.9311 39 1 2.8671 7.3603 0.6284 40 1 2.2718 2.1232 1.9978 41 1 0.6319 3.7619 4.3962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318581748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:48 Heat of formation + Delta-G solvation = 7.681262 kcal Electronic energy + Delta-G solvation = -25831.090653 eV Core-core repulsion = 22031.889780 eV Total energy + Delta-G solvation = -3799.200873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.36628 -41.49907 -39.73772 -38.24429 -35.29191 -34.47573 -34.12440 -31.76784 -31.49875 -30.13222 -29.70421 -27.00940 -25.65178 -24.72061 -23.35235 -22.61616 -21.70614 -21.31659 -20.22417 -19.80309 -19.15899 -18.46267 -17.74590 -17.06257 -16.96277 -16.83938 -16.45397 -16.14229 -15.84308 -15.50281 -15.10840 -15.02392 -14.71392 -14.55443 -14.21636 -14.13306 -13.82055 -13.75361 -13.21480 -13.04259 -12.99414 -12.81700 -12.78480 -12.36851 -12.08021 -11.87914 -11.64757 -11.56543 -11.36251 -11.28819 -10.96422 -10.88014 -10.60345 -10.15761 -9.95048 -9.25129 -8.97028 -7.86387 -5.13716 -0.75840 0.11175 0.46156 0.49136 1.04911 1.48779 1.50553 1.58733 1.72046 2.09943 2.23406 2.35456 2.60074 2.81632 3.47507 3.67140 3.83770 3.88101 3.93948 4.03724 4.13185 4.18960 4.36841 4.47035 4.53851 4.55805 4.69106 4.77465 4.86488 4.86686 5.08256 5.10544 5.12589 5.20544 5.40952 5.42134 5.55555 5.61548 5.72978 6.07417 6.28741 6.33068 6.59310 7.08507 7.40837 8.12108 8.37318 9.36802 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.004132 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.316778 B = 6775.439987 C = 9427.122212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.165 3.835 4 H 0.056 0.944 5 C 0.119 3.881 6 N -0.694 5.694 7 C 0.583 3.417 8 O -0.574 6.574 9 C -0.008 4.008 10 C -0.227 4.227 11 S 0.268 5.732 12 C 0.111 3.889 13 C -0.159 4.159 14 C -0.205 4.205 15 C -0.019 4.019 16 O -0.186 6.186 17 C 0.025 3.975 18 N -0.467 5.467 19 N -0.728 5.728 20 C -0.214 4.214 21 H 0.080 0.920 22 C -0.072 4.072 23 N -0.968 5.968 24 Si 0.958 3.042 25 H -0.266 1.266 26 H -0.302 1.302 27 H -0.298 1.298 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.414 0.586 36 H 0.203 0.797 37 H 0.183 0.817 38 H 0.252 0.748 39 H 0.207 0.793 40 H 0.371 0.629 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.801 12.125 -9.574 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.056 3.944 4 H 0.074 0.926 5 C -0.005 4.005 6 N -0.343 5.343 7 C 0.368 3.632 8 O -0.456 6.456 9 C -0.144 4.144 10 C -0.369 4.369 11 S 0.528 5.472 12 C -0.165 4.165 13 C -0.164 4.164 14 C -0.224 4.224 15 C -0.085 4.085 16 O -0.081 6.081 17 C -0.049 4.049 18 N -0.183 5.183 19 N -0.368 5.368 20 C -0.346 4.346 21 H 0.098 0.902 22 C -0.264 4.264 23 N -0.619 5.619 24 Si 0.789 3.211 25 H -0.190 1.190 26 H -0.229 1.229 27 H -0.225 1.225 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.220 0.780 37 H 0.200 0.800 38 H 0.268 0.732 39 H 0.224 0.776 40 H 0.203 0.797 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.204 12.237 -9.706 20.453 hybrid contribution -1.284 -0.705 0.871 1.704 sum 11.920 11.533 -8.835 18.792 Atomic orbital electron populations 1.21695 0.95868 1.00653 1.01785 1.21975 0.96719 0.96995 1.01174 1.20715 0.90633 0.93549 0.89491 0.92557 1.21706 0.94744 0.82181 1.01855 1.45862 1.06901 1.11125 1.70419 1.17450 0.82638 0.86621 0.76526 1.90737 1.56782 1.45367 1.52669 1.19997 0.90481 0.93693 1.10187 1.26791 1.00647 1.03515 1.05989 1.83198 1.05070 0.96409 1.62511 1.25142 0.94781 0.93331 1.03235 1.19320 0.93254 0.90366 1.13454 1.23041 1.02035 0.88737 1.08634 1.24819 0.80826 0.99845 1.02985 1.83951 1.35611 1.18281 1.70272 1.24454 0.97200 0.83388 0.99863 1.67003 1.37329 0.98065 1.15869 1.42573 1.15848 1.66138 1.12236 1.19526 0.92281 1.25325 0.97452 0.90201 1.25367 1.00956 1.03470 0.96630 1.69833 1.36761 1.51020 1.04298 0.85285 0.80909 0.77478 0.77430 1.18986 1.22947 1.22537 0.93281 0.93252 0.92699 0.90475 0.93481 0.89669 0.92630 0.74888 0.78002 0.79996 0.73247 0.77632 0.79733 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.18 71.98 0.66 -4.24 16 2 C -0.13 -4.28 5.61 30.60 0.17 -4.11 16 3 C 0.16 6.17 2.59 44.99 0.12 6.29 16 4 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 4.22 5.23 86.38 0.45 4.67 16 6 N -0.69 -26.18 5.38 -466.53 -2.51 -28.69 16 7 C 0.58 22.02 7.79 86.62 0.67 22.70 16 8 O -0.57 -23.38 16.65 -4.16 -0.07 -23.45 16 9 C -0.01 -0.26 6.64 40.65 0.27 0.01 16 10 C -0.23 -5.85 10.56 67.09 0.71 -5.14 16 11 S 0.27 5.19 23.07 -56.49 -1.30 3.89 16 12 C 0.11 3.01 7.46 87.54 0.65 3.66 16 13 C -0.16 -3.87 6.32 -18.98 -0.12 -3.99 16 14 C -0.20 -3.32 11.04 23.63 0.26 -3.06 16 15 C -0.02 -0.27 12.04 66.92 0.81 0.53 16 16 O -0.19 -4.08 10.54 1.65 0.02 -4.07 16 17 C 0.02 0.64 12.05 67.31 0.81 1.45 16 18 N -0.47 -15.58 10.03 -179.57 -1.80 -17.38 16 19 N -0.73 -34.42 4.51 -322.94 -1.46 -35.87 16 20 C -0.21 -11.06 7.75 84.03 0.65 -10.41 16 21 H 0.08 3.97 7.32 -2.91 -0.02 3.95 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.97 -58.22 13.06 21.65 0.28 -57.93 16 24 Si 0.96 45.29 29.55 68.60 2.03 47.32 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 28 H 0.05 2.04 5.99 -2.39 -0.01 2.03 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.41 16.68 7.61 -92.70 -0.71 15.98 16 36 H 0.20 4.53 7.99 -2.91 -0.02 4.51 16 37 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.25 1.00 8.06 -2.91 -0.02 0.97 16 39 H 0.21 5.64 8.06 -2.91 -0.02 5.61 16 40 H 0.37 19.69 7.80 -92.71 -0.72 18.97 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -69.86 370.02 1.43 -68.43 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -0.34 Total: 42.93 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.58 Total: 4.83 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -5.49 Total: -139.88 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.30 Total: 3.89 kcal Total: -69.86 1.43 -68.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318581748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.111 kcal (2) G-P(sol) polarization free energy of solvation -69.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds