Wall clock time and date at job start Tue Mar 31 2020 18:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46653 * 2 1 4 4 H 1.08993 * 109.47342 * 55.00331 * 3 2 1 5 5 C 1.53005 * 109.46702 * 175.00155 * 3 2 1 6 6 N 1.46505 * 109.46904 * 174.99745 * 5 3 2 7 7 C 1.34773 * 120.00095 * 180.02562 * 6 5 3 8 8 O 1.21643 * 119.99862 * 359.97438 * 7 6 5 9 9 C 1.47265 * 120.00141 * 179.72639 * 7 6 5 10 10 C 1.35090 * 122.42905 * 180.27403 * 9 7 6 11 11 S 1.71002 * 109.14161 * 179.97438 * 10 9 7 12 12 C 1.76000 * 90.59334 * 359.97438 * 11 10 9 13 13 C 1.47873 * 125.31788 * 179.97438 * 12 11 10 14 14 C 1.46852 * 127.14705 * 359.73574 * 13 12 11 15 15 C 1.34301 * 106.01042 * 179.86614 * 14 13 12 16 16 O 1.34166 * 109.05353 * 0.40157 * 15 14 13 17 17 C 1.34002 * 110.80231 * 359.73279 * 16 15 14 18 18 N 1.29879 * 109.36341 * 359.73661 * 12 11 10 19 19 N 1.46507 * 109.46958 * 294.99759 * 3 2 1 20 20 C 1.36935 * 119.99629 * 85.00491 * 19 3 2 21 21 H 1.08002 * 120.00075 * 0.02562 * 20 19 3 22 22 C 1.38813 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00363 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99918 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47237 * 89.99749 * 24 22 20 26 26 H 1.48491 * 109.47067 * 210.00204 * 24 22 20 27 27 H 1.48506 * 109.46934 * 329.99790 * 24 22 20 28 28 H 1.08998 * 109.46690 * 300.00094 * 1 2 3 29 29 H 1.08994 * 109.47189 * 60.00369 * 1 2 3 30 30 H 1.09001 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47127 * 240.00215 * 2 1 3 32 32 H 1.08994 * 109.47189 * 119.99631 * 2 1 3 33 33 H 1.09003 * 109.46832 * 54.99998 * 5 3 2 34 34 H 1.08993 * 109.47355 * 294.99848 * 5 3 2 35 35 H 0.97000 * 119.99792 * 359.97438 * 6 5 3 36 36 H 1.07996 * 125.42732 * 359.97438 * 10 9 7 37 37 H 1.08004 * 126.99271 * 359.97438 * 14 13 12 38 38 H 1.08006 * 125.47086 * 180.11039 * 15 14 13 39 39 H 1.08000 * 125.79051 * 179.97438 * 17 16 15 40 40 H 0.96996 * 119.99736 * 265.00001 * 19 3 2 41 41 H 0.96999 * 120.00252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8170 0.0059 7 6 5.3857 3.0632 0.0857 8 8 6.1658 2.1458 0.2577 9 6 5.8869 4.4421 -0.0408 10 6 7.2020 4.7438 0.0261 11 16 7.4002 6.4319 -0.1621 12 6 5.6597 6.6367 -0.3243 13 6 4.9665 7.9259 -0.5342 14 6 5.5803 9.2558 -0.6402 15 6 4.5674 10.1172 -0.8292 16 8 3.4105 9.4378 -0.8380 17 6 3.6271 8.1270 -0.6633 18 7 5.0797 5.4780 -0.2359 19 7 1.6524 2.0975 -1.2519 20 6 0.4155 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0485 3.2944 -2.5548 23 7 0.8893 3.3302 -3.5667 24 14 -1.6385 4.0808 -2.7142 25 1 -1.5659 5.5000 -2.2831 26 1 -2.0834 4.0153 -4.1293 27 1 -2.6073 3.3519 -1.8565 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.9954 0.8312 -0.6660 34 1 3.8499 1.0378 1.0959 35 1 3.4409 3.5484 -0.1317 36 1 8.0008 4.0324 0.1747 37 1 6.6323 9.4926 -0.5803 38 1 4.6677 11.1858 -0.9496 39 1 2.8672 7.3602 -0.6301 40 1 2.2719 2.1232 -1.9978 41 1 0.6330 3.7644 -4.3953 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318581768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:51 Heat of formation + Delta-G solvation = 29.248481 kcal Electronic energy + Delta-G solvation = -25831.972166 eV Core-core repulsion = 22033.706517 eV Total energy + Delta-G solvation = -3798.265648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.56225 -40.25708 -38.42291 -36.63671 -33.68561 -33.58249 -32.33540 -30.84671 -29.74863 -29.19489 -28.14733 -25.80448 -24.08420 -23.15239 -22.01075 -21.85476 -20.37985 -19.96600 -19.09583 -18.72785 -17.55390 -17.23059 -16.46199 -16.16405 -15.57414 -15.43862 -15.14842 -14.93318 -14.30405 -14.10609 -13.77792 -13.63225 -13.35606 -13.15815 -13.08743 -12.97160 -12.58697 -12.37257 -12.11459 -11.99734 -11.42890 -10.95575 -10.85763 -10.73999 -10.59354 -10.43104 -10.17463 -10.03327 -9.99958 -9.76680 -9.65523 -9.51134 -9.21117 -8.93249 -8.64042 -8.28037 -7.00491 -5.78116 -3.07344 0.27509 1.08455 1.50516 1.56244 1.86356 2.71299 2.88394 3.40725 3.47029 3.48523 3.51561 3.63303 3.86155 4.56299 4.62631 4.65499 4.95600 5.14405 5.24059 5.31040 5.43286 5.47210 5.52145 5.58576 5.87641 5.94525 5.96085 5.98438 5.98865 6.08732 6.17735 6.44591 6.56375 6.59686 6.62198 6.87277 6.90002 7.04120 7.26358 7.39965 7.68845 7.99468 8.38488 8.52789 9.50585 10.05712 10.41750 11.43635 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.004135 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.016701 B = 6770.315616 C = 9422.197796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.690 5.690 7 C 0.586 3.414 8 O -0.551 6.551 9 C 0.026 3.974 10 C -0.223 4.223 11 S 0.164 5.836 12 C 0.137 3.863 13 C -0.144 4.144 14 C -0.198 4.198 15 C -0.032 4.032 16 O -0.175 6.175 17 C 0.050 3.950 18 N -0.434 5.434 19 N -0.721 5.721 20 C -0.236 4.236 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.420 0.580 36 H 0.190 0.810 37 H 0.155 0.845 38 H 0.207 0.793 39 H 0.221 0.779 40 H 0.385 0.615 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.579 10.750 8.036 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.012 4.012 6 N -0.340 5.340 7 C 0.369 3.631 8 O -0.430 6.430 9 C -0.110 4.110 10 C -0.365 4.365 11 S 0.422 5.578 12 C -0.140 4.140 13 C -0.149 4.149 14 C -0.219 4.219 15 C -0.098 4.098 16 O -0.069 6.069 17 C -0.024 4.024 18 N -0.149 5.149 19 N -0.363 5.363 20 C -0.367 4.367 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.732 3.268 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.258 0.742 36 H 0.207 0.793 37 H 0.173 0.827 38 H 0.224 0.776 39 H 0.238 0.762 40 H 0.219 0.781 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.989 10.863 8.080 18.084 hybrid contribution -1.032 -0.316 -0.475 1.179 sum 10.957 10.547 7.606 17.004 Atomic orbital electron populations 1.21767 0.95699 0.99600 1.03274 1.22068 0.96985 0.98349 1.00019 1.20561 0.89745 0.92867 0.91526 0.92813 1.21759 0.95867 0.82304 1.01244 1.45828 1.06716 1.11216 1.70280 1.17114 0.83001 0.85655 0.77354 1.90775 1.56483 1.44338 1.51386 1.20205 0.89319 0.94513 1.06955 1.26425 1.01291 1.00941 1.07889 1.83649 1.08818 0.99935 1.65352 1.24780 0.92327 0.93534 1.03317 1.19016 0.92918 0.89567 1.13422 1.22717 1.00448 0.90440 1.08265 1.23882 0.82146 0.98273 1.05498 1.83955 1.34022 1.18812 1.70144 1.24595 0.96970 0.82752 0.98076 1.67062 1.35981 0.97242 1.14579 1.42445 1.16797 1.65818 1.11217 1.19188 0.91857 1.27733 0.97924 0.90942 1.24715 0.97935 1.01574 0.96409 1.69664 1.35114 1.48831 1.03978 0.86289 0.84270 0.79376 0.76839 1.21754 1.21936 1.20788 0.94135 0.89633 0.94901 0.92504 0.93846 0.91596 0.91641 0.74202 0.79296 0.82730 0.77624 0.76233 0.78078 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.09 2.59 -67.92 -0.18 2.91 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.11 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.69 -12.67 5.38 -61.43 -0.33 -13.00 16 7 C 0.59 10.82 7.79 -12.59 -0.10 10.72 16 8 O -0.55 -11.09 16.65 5.24 0.09 -11.00 16 9 C 0.03 0.42 6.64 -84.91 -0.56 -0.14 16 10 C -0.22 -3.01 10.56 29.61 0.31 -2.70 16 11 S 0.16 1.78 23.07 -107.50 -2.48 -0.70 16 12 C 0.14 1.89 7.46 -14.44 -0.11 1.78 16 13 C -0.14 -1.79 6.32 -103.25 -0.65 -2.44 16 14 C -0.20 -1.86 11.04 -37.49 -0.41 -2.27 16 15 C -0.03 -0.27 12.04 29.34 0.35 0.09 16 16 O -0.17 -1.97 10.54 6.88 0.07 -1.89 16 17 C 0.05 0.62 12.05 29.95 0.36 0.98 16 18 N -0.43 -7.05 10.03 -8.11 -0.08 -7.13 16 19 N -0.72 -16.71 4.51 -53.42 -0.24 -16.95 16 20 C -0.24 -6.02 7.75 -15.06 -0.12 -6.14 16 21 H 0.07 1.81 7.33 -52.49 -0.38 1.42 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 24 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.82 5.99 -51.93 -0.31 1.51 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.42 8.10 7.61 -40.82 -0.31 7.79 16 36 H 0.19 2.26 7.99 -52.49 -0.42 1.84 16 37 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.21 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.22 2.71 8.06 -52.49 -0.42 2.28 16 40 H 0.39 9.86 7.80 -40.82 -0.32 9.54 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -31.14 370.02 -7.83 -38.97 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -5.10 Total: 16.16 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.03 Total: -0.36 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.07 Total: -63.27 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.16 Total: -12.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.48 Total: -0.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.14 -7.83 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318581768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.220 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds