Wall clock time and date at job start Tue Mar 31 2020 18:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46653 * 2 1 4 4 H 1.08993 * 109.47342 * 55.00331 * 3 2 1 5 5 C 1.53005 * 109.46702 * 175.00155 * 3 2 1 6 6 N 1.46505 * 109.46904 * 174.99745 * 5 3 2 7 7 C 1.34773 * 120.00095 * 180.02562 * 6 5 3 8 8 O 1.21643 * 119.99862 * 359.97438 * 7 6 5 9 9 C 1.47265 * 120.00141 * 179.72639 * 7 6 5 10 10 C 1.35090 * 122.42905 * 180.27403 * 9 7 6 11 11 S 1.71002 * 109.14161 * 179.97438 * 10 9 7 12 12 C 1.76000 * 90.59334 * 359.97438 * 11 10 9 13 13 C 1.47873 * 125.31788 * 179.97438 * 12 11 10 14 14 C 1.46852 * 127.14705 * 359.73574 * 13 12 11 15 15 C 1.34301 * 106.01042 * 179.86614 * 14 13 12 16 16 O 1.34166 * 109.05353 * 0.40157 * 15 14 13 17 17 C 1.34002 * 110.80231 * 359.73279 * 16 15 14 18 18 N 1.29879 * 109.36341 * 359.73661 * 12 11 10 19 19 N 1.46507 * 109.46958 * 294.99759 * 3 2 1 20 20 C 1.36935 * 119.99629 * 85.00491 * 19 3 2 21 21 H 1.08002 * 120.00075 * 0.02562 * 20 19 3 22 22 C 1.38813 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00363 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99918 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47237 * 89.99749 * 24 22 20 26 26 H 1.48491 * 109.47067 * 210.00204 * 24 22 20 27 27 H 1.48506 * 109.46934 * 329.99790 * 24 22 20 28 28 H 1.08998 * 109.46690 * 300.00094 * 1 2 3 29 29 H 1.08994 * 109.47189 * 60.00369 * 1 2 3 30 30 H 1.09001 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47127 * 240.00215 * 2 1 3 32 32 H 1.08994 * 109.47189 * 119.99631 * 2 1 3 33 33 H 1.09003 * 109.46832 * 54.99998 * 5 3 2 34 34 H 1.08993 * 109.47355 * 294.99848 * 5 3 2 35 35 H 0.97000 * 119.99792 * 359.97438 * 6 5 3 36 36 H 1.07996 * 125.42732 * 359.97438 * 10 9 7 37 37 H 1.08004 * 126.99271 * 359.97438 * 14 13 12 38 38 H 1.08006 * 125.47086 * 180.11039 * 15 14 13 39 39 H 1.08000 * 125.79051 * 179.97438 * 17 16 15 40 40 H 0.96996 * 119.99736 * 265.00001 * 19 3 2 41 41 H 0.96999 * 120.00252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8170 0.0059 7 6 5.3857 3.0632 0.0857 8 8 6.1658 2.1458 0.2577 9 6 5.8869 4.4421 -0.0408 10 6 7.2020 4.7438 0.0261 11 16 7.4002 6.4319 -0.1621 12 6 5.6597 6.6367 -0.3243 13 6 4.9665 7.9259 -0.5342 14 6 5.5803 9.2558 -0.6402 15 6 4.5674 10.1172 -0.8292 16 8 3.4105 9.4378 -0.8380 17 6 3.6271 8.1270 -0.6633 18 7 5.0797 5.4780 -0.2359 19 7 1.6524 2.0975 -1.2519 20 6 0.4155 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0485 3.2944 -2.5548 23 7 0.8893 3.3302 -3.5667 24 14 -1.6385 4.0808 -2.7142 25 1 -1.5659 5.5000 -2.2831 26 1 -2.0834 4.0153 -4.1293 27 1 -2.6073 3.3519 -1.8565 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.9954 0.8312 -0.6660 34 1 3.8499 1.0378 1.0959 35 1 3.4409 3.5484 -0.1317 36 1 8.0008 4.0324 0.1747 37 1 6.6323 9.4926 -0.5803 38 1 4.6677 11.1858 -0.9496 39 1 2.8672 7.3602 -0.6301 40 1 2.2719 2.1232 -1.9978 41 1 0.6330 3.7644 -4.3953 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318581768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:50 Heat of formation + Delta-G solvation = 7.810671 kcal Electronic energy + Delta-G solvation = -25832.901779 eV Core-core repulsion = 22033.706517 eV Total energy + Delta-G solvation = -3799.195261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.36796 -41.49813 -39.73646 -38.24227 -35.29038 -34.47635 -34.12363 -31.76762 -31.49786 -30.13264 -29.70331 -27.00937 -25.64918 -24.71956 -23.35246 -22.61643 -21.70545 -21.31633 -20.22446 -19.80284 -19.15656 -18.46316 -17.74534 -17.06185 -16.96223 -16.83920 -16.45334 -16.14257 -15.84598 -15.49985 -15.10834 -15.02006 -14.71381 -14.55385 -14.21696 -14.13453 -13.82055 -13.75139 -13.21547 -13.04287 -12.99442 -12.80946 -12.74223 -12.38523 -12.11887 -11.88311 -11.65189 -11.56585 -11.35877 -11.28643 -10.96171 -10.86874 -10.60455 -10.15768 -9.95069 -9.25183 -8.96881 -7.85999 -5.13395 -0.75914 0.11137 0.46241 0.48927 1.04875 1.49907 1.50566 1.58011 1.71970 2.09863 2.23267 2.35606 2.60341 2.81601 3.47676 3.67113 3.83714 3.88183 3.93992 4.03684 4.13123 4.18921 4.36892 4.47053 4.53826 4.55820 4.69090 4.77423 4.86510 4.86645 5.08278 5.10439 5.12557 5.20462 5.40924 5.42115 5.55552 5.61343 5.73083 6.07369 6.28711 6.33149 6.59281 7.08475 7.41024 8.12342 8.37659 9.36950 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.004135 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.016701 B = 6770.315616 C = 9422.197796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.165 3.835 4 H 0.056 0.944 5 C 0.119 3.881 6 N -0.694 5.694 7 C 0.583 3.417 8 O -0.574 6.574 9 C -0.008 4.008 10 C -0.227 4.227 11 S 0.269 5.731 12 C 0.111 3.889 13 C -0.158 4.158 14 C -0.205 4.205 15 C -0.019 4.019 16 O -0.186 6.186 17 C 0.025 3.975 18 N -0.467 5.467 19 N -0.727 5.727 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.072 4.072 23 N -0.968 5.968 24 Si 0.958 3.042 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.270 1.270 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.414 0.586 36 H 0.203 0.797 37 H 0.183 0.817 38 H 0.252 0.748 39 H 0.207 0.793 40 H 0.371 0.629 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.795 12.107 9.463 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.056 3.944 4 H 0.074 0.926 5 C -0.005 4.005 6 N -0.343 5.343 7 C 0.368 3.632 8 O -0.456 6.456 9 C -0.144 4.144 10 C -0.369 4.369 11 S 0.528 5.472 12 C -0.165 4.165 13 C -0.164 4.164 14 C -0.224 4.224 15 C -0.085 4.085 16 O -0.081 6.081 17 C -0.049 4.049 18 N -0.183 5.183 19 N -0.368 5.368 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.264 4.264 23 N -0.619 5.619 24 Si 0.789 3.211 25 H -0.217 1.217 26 H -0.231 1.231 27 H -0.195 1.195 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.251 0.749 36 H 0.220 0.780 37 H 0.200 0.800 38 H 0.268 0.732 39 H 0.223 0.777 40 H 0.203 0.797 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.197 12.212 9.564 20.366 hybrid contribution -1.287 -0.691 -0.832 1.682 sum 11.910 11.521 8.732 18.730 Atomic orbital electron populations 1.21694 0.95879 1.00637 1.01778 1.21976 0.96701 0.97000 1.01172 1.20716 0.90630 0.93547 0.89495 0.92565 1.21709 0.94747 0.82175 1.01855 1.45865 1.06906 1.11125 1.70414 1.17451 0.82639 0.86617 0.76530 1.90738 1.56788 1.45346 1.52682 1.20000 0.90491 0.93727 1.10149 1.26793 1.00629 1.03545 1.05972 1.83196 1.04948 0.96502 1.62513 1.25145 0.94780 0.93316 1.03265 1.19319 0.93237 0.90383 1.13434 1.23040 1.02036 0.88743 1.08631 1.24817 0.80809 0.99857 1.02984 1.83950 1.35587 1.18319 1.70258 1.24452 0.97198 0.83386 0.99891 1.67011 1.37358 0.98066 1.15831 1.42563 1.15846 1.66146 1.12231 1.19482 0.92334 1.25447 0.97456 0.90246 1.25366 1.00974 1.03422 0.96619 1.69821 1.36831 1.50917 1.04318 0.85356 0.81092 0.78590 0.76067 1.21667 1.23142 1.19537 0.93261 0.93299 0.92713 0.93477 0.90475 0.92628 0.89666 0.74894 0.77998 0.79990 0.73239 0.77664 0.79733 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.18 71.98 0.66 -4.25 16 2 C -0.13 -4.28 5.61 30.60 0.17 -4.11 16 3 C 0.16 6.18 2.59 44.99 0.12 6.30 16 4 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 4.22 5.23 86.38 0.45 4.68 16 6 N -0.69 -26.21 5.38 -466.49 -2.51 -28.72 16 7 C 0.58 22.04 7.79 86.62 0.67 22.71 16 8 O -0.57 -23.39 16.65 -4.17 -0.07 -23.46 16 9 C -0.01 -0.26 6.64 40.65 0.27 0.01 16 10 C -0.23 -5.85 10.56 67.09 0.71 -5.14 16 11 S 0.27 5.20 23.07 -56.49 -1.30 3.90 16 12 C 0.11 3.01 7.46 87.53 0.65 3.66 16 13 C -0.16 -3.88 6.32 -18.98 -0.12 -4.00 16 14 C -0.20 -3.33 11.04 23.63 0.26 -3.07 16 15 C -0.02 -0.27 12.04 66.92 0.81 0.53 16 16 O -0.19 -4.09 10.54 1.71 0.02 -4.08 16 17 C 0.02 0.63 12.05 67.31 0.81 1.45 16 18 N -0.47 -15.60 10.03 -179.56 -1.80 -17.41 16 19 N -0.73 -34.44 4.51 -322.92 -1.46 -35.90 16 20 C -0.22 -11.14 7.75 84.03 0.65 -10.49 16 21 H 0.08 3.95 7.33 -2.91 -0.02 3.93 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 23 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 24 Si 0.96 45.26 29.55 68.60 2.03 47.29 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 26 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 2.05 5.99 -2.39 -0.01 2.03 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.41 16.71 7.61 -92.71 -0.71 16.00 16 36 H 0.20 4.54 7.99 -2.91 -0.02 4.51 16 37 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.25 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.21 5.66 8.06 -2.91 -0.02 5.63 16 40 H 0.37 19.70 7.80 -92.71 -0.72 18.98 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -69.79 370.02 1.43 -68.36 By element: Atomic # 1 Polarization: 43.50 SS G_CDS: -0.34 Total: 43.16 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.58 Total: 4.77 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -5.49 Total: -139.95 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.30 Total: 3.90 kcal Total: -69.79 1.43 -68.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318581768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.175 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds