Wall clock time and date at job start Tue Mar 31 2020 19:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21617 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.47294 * 120.00479 * 179.97438 * 16 15 14 19 19 C 1.34222 * 124.79541 * 179.72073 * 18 16 15 20 20 C 1.39562 * 115.53574 * 179.85488 * 19 18 16 21 21 C 1.47750 * 129.60119 * 180.16797 * 20 19 18 22 22 C 1.34061 * 119.56291 * 180.27344 * 21 20 19 23 23 N 1.36557 * 121.41895 * 0.02562 * 22 21 20 24 24 H 0.97007 * 119.15719 * 179.97438 * 23 22 21 25 25 C 1.34296 * 121.68468 * 359.95635 * 23 22 21 26 26 O 1.21946 * 119.69688 * 180.02562 * 25 23 22 27 27 C 1.39393 * 112.90014 * 0.43326 * 20 19 18 28 28 S 1.75566 * 124.78997 * 0.03449 * 18 16 15 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 37 37 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 38 38 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 39 39 H 1.08008 * 122.23080 * 0.04617 * 19 18 16 40 40 H 1.08005 * 120.21938 * 0.25128 * 21 20 19 41 41 H 1.07997 * 119.28980 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6274 -1.4462 3.7797 18 6 1.6065 0.3478 4.8655 19 6 1.8917 -0.0120 6.1268 20 6 1.4312 0.8553 7.1185 21 6 1.5709 0.7662 8.5867 22 6 1.0381 1.7221 9.3611 23 7 0.3653 2.7815 8.8228 24 1 -0.0074 3.4543 9.4139 25 6 0.2069 2.9160 7.4960 26 8 -0.4001 3.8770 7.0543 27 6 0.7391 1.9500 6.6031 28 16 0.6973 1.8496 4.8478 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8593 -2.3518 35 1 1.7304 0.3692 -6.7999 36 1 1.6054 -1.7197 1.2953 37 1 3.1263 -0.7993 1.2057 38 1 1.1483 0.8592 2.3518 39 1 2.4436 -0.9110 6.3586 40 1 2.0984 -0.0638 9.0332 41 1 1.1431 1.6527 10.4337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319206370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:38 Heat of formation + Delta-G solvation = -11.177225 kcal Electronic energy + Delta-G solvation = -24779.489778 eV Core-core repulsion = 20979.471140 eV Total energy + Delta-G solvation = -3800.018638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48884 -40.08523 -38.01885 -37.10927 -36.45417 -34.62466 -32.68765 -31.77078 -30.63184 -30.20018 -27.20079 -26.22950 -25.15110 -24.03346 -22.33225 -21.56705 -20.94812 -20.27644 -19.51186 -18.64083 -17.53544 -17.22145 -17.16149 -16.20143 -16.12911 -16.00079 -15.68481 -14.93591 -14.75067 -14.53605 -14.31504 -14.00356 -13.82375 -13.33682 -13.25000 -13.19345 -12.64600 -12.53102 -12.51875 -12.48402 -12.24672 -11.48313 -11.45372 -11.08448 -10.80489 -10.79696 -10.69672 -10.67263 -10.34887 -10.11672 -9.97098 -9.59263 -9.49532 -9.27195 -8.91437 -8.29743 -7.24788 -5.77552 -3.13448 -0.43758 0.72154 0.85715 1.27751 1.63523 2.49211 2.74378 2.75283 3.00068 3.35625 3.38238 3.44390 3.89243 4.03334 4.33175 4.36264 4.57398 4.57832 4.78119 4.98295 5.02784 5.17699 5.18993 5.38374 5.48359 5.52656 5.60989 5.64068 5.69845 5.79758 5.80980 5.99987 6.09434 6.15386 6.24006 6.35624 6.42725 6.61969 6.71001 7.12479 7.37944 7.80019 7.98471 8.41164 9.19957 9.92058 10.11479 11.40774 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.002102 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.634137 B =13316.928144 C =14365.912657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 H 0.077 0.923 4 C 0.166 3.834 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.127 3.873 15 N -0.717 5.717 16 C 0.585 3.415 17 O -0.519 6.519 18 C -0.215 4.215 19 C -0.066 4.066 20 C -0.002 4.002 21 C -0.174 4.174 22 C 0.109 3.891 23 N -0.618 5.618 24 H 0.420 0.580 25 C 0.569 3.431 26 O -0.537 6.537 27 C -0.274 4.274 28 S 0.251 5.749 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.399 0.601 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 3.685 36.533 36.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.096 0.904 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.004 3.996 15 N -0.368 5.368 16 C 0.369 3.631 17 O -0.396 6.396 18 C -0.336 4.336 19 C -0.099 4.099 20 C -0.019 4.019 21 C -0.199 4.199 22 C -0.015 4.015 23 N -0.255 5.255 24 H 0.258 0.742 25 C 0.364 3.636 26 O -0.418 6.418 27 C -0.395 4.395 28 S 0.521 5.479 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.179 0.821 40 H 0.171 0.829 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.078 4.183 34.742 35.128 hybrid contribution -0.451 0.914 1.385 1.719 sum -3.529 5.097 36.126 36.655 Atomic orbital electron populations 1.21842 0.94645 1.02433 1.01390 1.21639 0.96773 1.00681 0.94487 0.90416 1.20542 0.97256 0.94244 0.84182 1.42681 1.67582 1.27405 1.02349 1.19057 1.29444 1.07167 0.81755 0.89154 1.24679 1.00767 0.98647 0.95116 1.69699 1.51252 1.40220 0.96959 0.86549 0.80240 0.84823 0.76870 1.21087 1.21713 1.20362 1.21516 1.00736 0.95330 0.82057 1.45969 1.57241 1.27787 1.05840 1.17016 0.79806 0.84448 0.81857 1.90845 1.39465 1.23250 1.86041 1.24452 1.08642 1.02206 0.98345 1.20069 0.99703 1.00700 0.89416 1.19316 0.95630 0.92440 0.94525 1.21361 1.07299 1.01820 0.89439 1.21488 0.93313 0.87242 0.99504 1.43021 1.50025 1.24414 1.08022 0.74161 1.15740 0.80706 0.85583 0.81614 1.91015 1.42691 1.32156 1.75907 1.24165 1.12998 1.02976 0.99388 1.84184 1.49604 1.16510 0.97601 0.91552 0.92193 0.93719 0.95046 0.95128 0.80607 0.93045 0.90532 0.90513 0.76662 0.82075 0.82860 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.94 37.16 0.33 -1.62 16 2 C -0.12 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 4 C 0.17 3.05 5.65 -4.04 -0.02 3.03 16 5 N -0.75 -17.52 5.13 -59.91 -0.31 -17.83 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 10 Si 0.88 21.98 27.74 -169.99 -4.71 17.27 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 14 C 0.13 1.58 5.06 -4.05 -0.02 1.56 16 15 N -0.72 -7.98 5.28 -61.43 -0.32 -8.30 16 16 C 0.58 7.11 7.80 -12.58 -0.10 7.01 16 17 O -0.52 -7.87 16.75 5.26 0.09 -7.78 16 18 C -0.21 -2.17 6.36 -37.32 -0.24 -2.40 16 19 C -0.07 -0.58 9.82 -40.50 -0.40 -0.98 16 20 C 0.00 -0.02 6.08 -105.09 -0.64 -0.66 16 21 C -0.17 -0.76 10.29 -37.17 -0.38 -1.14 16 22 C 0.11 0.30 11.11 -16.92 -0.19 0.11 16 23 N -0.62 -3.18 5.23 -14.86 -0.08 -3.26 16 24 H 0.42 1.11 8.87 -40.82 -0.36 0.75 16 25 C 0.57 5.55 7.71 -15.08 -0.12 5.43 16 26 O -0.54 -7.13 17.89 4.97 0.09 -7.04 16 27 C -0.27 -2.65 6.48 -37.75 -0.24 -2.89 16 28 S 0.25 2.37 22.27 -107.50 -2.39 -0.02 16 29 H 0.07 1.02 7.18 -51.93 -0.37 0.65 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.36 8.12 4.71 -40.82 -0.19 7.93 16 35 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 3.76 6.72 -40.82 -0.27 3.49 16 39 H 0.16 1.25 7.98 -52.48 -0.42 0.83 16 40 H 0.15 0.27 8.06 -52.48 -0.42 -0.15 16 41 H 0.17 -0.27 8.06 -52.49 -0.42 -0.70 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -37.16 362.71 -8.86 -46.02 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.97 Total: 5.50 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.07 Total: -57.96 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.18 Total: -14.82 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.39 Total: -0.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.16 -8.86 -46.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319206370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.844 kcal (2) G-P(sol) polarization free energy of solvation -37.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds