Wall clock time and date at job start Tue Mar 31 2020 19:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21617 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.47294 * 120.00479 * 179.97438 * 16 15 14 19 19 C 1.34222 * 124.79541 * 179.72073 * 18 16 15 20 20 C 1.39562 * 115.53574 * 179.85488 * 19 18 16 21 21 C 1.47750 * 129.60119 * 180.16797 * 20 19 18 22 22 C 1.34061 * 119.56291 * 180.27344 * 21 20 19 23 23 N 1.36557 * 121.41895 * 0.02562 * 22 21 20 24 24 H 0.97007 * 119.15719 * 179.97438 * 23 22 21 25 25 C 1.34296 * 121.68468 * 359.95635 * 23 22 21 26 26 O 1.21946 * 119.69688 * 180.02562 * 25 23 22 27 27 C 1.39393 * 112.90014 * 0.43326 * 20 19 18 28 28 S 1.75566 * 124.78997 * 0.03449 * 18 16 15 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 37 37 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 38 38 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 39 39 H 1.08008 * 122.23080 * 0.04617 * 19 18 16 40 40 H 1.08005 * 120.21938 * 0.25128 * 21 20 19 41 41 H 1.07997 * 119.28980 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6274 -1.4462 3.7797 18 6 1.6065 0.3478 4.8655 19 6 1.8917 -0.0120 6.1268 20 6 1.4312 0.8553 7.1185 21 6 1.5709 0.7662 8.5867 22 6 1.0381 1.7221 9.3611 23 7 0.3653 2.7815 8.8228 24 1 -0.0074 3.4543 9.4139 25 6 0.2069 2.9160 7.4960 26 8 -0.4001 3.8770 7.0543 27 6 0.7391 1.9500 6.6031 28 16 0.6973 1.8496 4.8478 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8593 -2.3518 35 1 1.7304 0.3692 -6.7999 36 1 1.6054 -1.7197 1.2953 37 1 3.1263 -0.7993 1.2057 38 1 1.1483 0.8592 2.3518 39 1 2.4436 -0.9110 6.3586 40 1 2.0984 -0.0638 9.0332 41 1 1.1431 1.6527 10.4337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319206370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:37 Heat of formation + Delta-G solvation = -39.471076 kcal Electronic energy + Delta-G solvation = -24780.716691 eV Core-core repulsion = 20979.471140 eV Total energy + Delta-G solvation = -3801.245552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05839 -41.04427 -38.79496 -38.28727 -37.10913 -36.12145 -34.27858 -32.69614 -32.11512 -30.82825 -28.16133 -27.66568 -26.14084 -24.71897 -23.90130 -22.51076 -21.84649 -21.39908 -20.20918 -19.69143 -19.11356 -17.98923 -17.71725 -17.13341 -16.85047 -16.83004 -16.61223 -16.46868 -15.90003 -15.61985 -15.36593 -15.22214 -14.91251 -14.59746 -14.30059 -14.00412 -13.79827 -13.73874 -13.62363 -13.22907 -13.05073 -13.04435 -12.88756 -12.20754 -12.19663 -12.11141 -12.02159 -11.77258 -11.73629 -11.51181 -11.37902 -10.98730 -10.59075 -10.30135 -10.12529 -9.30026 -8.81565 -8.02837 -5.36650 -1.11658 0.05742 0.39865 0.62563 0.97469 1.37343 1.41554 1.48740 1.83407 1.88463 2.03931 2.44788 2.48270 3.28444 3.33622 3.50267 3.53578 3.70426 3.80255 3.89991 3.97619 4.08818 4.22638 4.47681 4.50069 4.61280 4.65789 4.73500 4.89631 4.92603 4.97472 4.99819 5.07867 5.14954 5.21500 5.28621 5.41111 5.73953 5.75664 5.87753 6.20694 6.21989 6.82196 6.87752 7.07761 7.83124 8.02962 9.18607 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.002102 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.634137 B =13316.928144 C =14365.912657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.160 3.840 5 N -0.755 5.755 6 C -0.236 4.236 7 H 0.055 0.945 8 C -0.066 4.066 9 N -0.984 5.984 10 Si 0.956 3.044 11 H -0.278 1.278 12 H -0.297 1.297 13 H -0.247 1.247 14 C 0.135 3.865 15 N -0.709 5.709 16 C 0.587 3.413 17 O -0.554 6.554 18 C -0.226 4.226 19 C -0.061 4.061 20 C 0.005 3.995 21 C -0.187 4.187 22 C 0.130 3.870 23 N -0.603 5.603 24 H 0.434 0.566 25 C 0.558 3.442 26 O -0.588 6.588 27 C -0.303 4.303 28 S 0.231 5.769 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.368 0.632 35 H 0.258 0.742 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.408 0.592 39 H 0.172 0.828 40 H 0.186 0.814 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 4.628 40.841 41.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.105 0.895 4 C 0.033 3.967 5 N -0.401 5.401 6 C -0.367 4.367 7 H 0.073 0.927 8 C -0.258 4.258 9 N -0.635 5.635 10 Si 0.783 3.217 11 H -0.204 1.204 12 H -0.223 1.223 13 H -0.172 1.172 14 C 0.012 3.988 15 N -0.360 5.360 16 C 0.373 3.627 17 O -0.434 6.434 18 C -0.347 4.347 19 C -0.094 4.094 20 C -0.012 4.012 21 C -0.211 4.211 22 C 0.006 3.994 23 N -0.239 5.239 24 H 0.274 0.726 25 C 0.354 3.646 26 O -0.473 6.473 27 C -0.424 4.424 28 S 0.502 5.498 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.201 0.799 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.189 0.811 40 H 0.203 0.797 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.707 5.134 39.140 39.649 hybrid contribution -0.167 0.491 0.244 0.573 sum -3.874 5.625 39.384 39.972 Atomic orbital electron populations 1.21832 0.93807 1.02599 1.01948 1.21433 0.97304 1.00570 0.92746 0.89500 1.20699 0.97173 0.94239 0.84559 1.42648 1.67518 1.27971 1.01971 1.19038 1.27939 1.05714 0.83973 0.92656 1.25551 1.02707 1.02887 0.94632 1.69890 1.53399 1.42218 0.97946 0.85396 0.78872 0.79771 0.77664 1.20409 1.22343 1.17170 1.21297 1.00423 0.95186 0.81911 1.45833 1.57018 1.27928 1.05264 1.17229 0.79037 0.84024 0.82426 1.90823 1.41157 1.24808 1.86591 1.24240 1.09851 1.02634 0.97988 1.20309 0.98937 1.00933 0.89227 1.19676 0.94054 0.91062 0.96386 1.21824 1.08275 1.03604 0.87443 1.22396 0.90208 0.84937 1.01814 1.43043 1.48899 1.25199 1.06750 0.72565 1.15905 0.80576 0.85080 0.83071 1.90981 1.45246 1.34006 1.77065 1.24280 1.14727 1.04154 0.99196 1.84103 1.50402 1.16485 0.98826 0.93253 0.92304 0.90840 0.95356 0.95420 0.79859 0.93342 0.90681 0.90927 0.75503 0.81060 0.79675 0.75776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.94 71.98 0.64 -2.94 16 2 C -0.10 -2.68 2.46 -10.79 -0.03 -2.71 16 3 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 4 C 0.16 5.85 5.65 86.38 0.49 6.33 16 5 N -0.75 -34.68 5.13 -343.46 -1.76 -36.44 16 6 C -0.24 -13.54 10.47 84.03 0.88 -12.65 16 7 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 8 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 9 N -0.98 -63.64 13.97 21.65 0.30 -63.33 16 10 Si 0.96 45.31 27.74 68.60 1.90 47.21 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 13 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 14 C 0.14 3.24 5.06 86.38 0.44 3.68 16 15 N -0.71 -15.01 5.28 -466.52 -2.46 -17.47 16 16 C 0.59 13.92 7.80 86.63 0.68 14.59 16 17 O -0.55 -16.61 16.75 -4.08 -0.07 -16.68 16 18 C -0.23 -4.40 6.36 23.74 0.15 -4.25 16 19 C -0.06 -0.98 9.82 21.67 0.21 -0.77 16 20 C 0.00 0.06 6.08 -20.16 -0.12 -0.06 16 21 C -0.19 -0.86 10.29 23.83 0.25 -0.61 16 22 C 0.13 0.08 11.11 83.01 0.92 1.00 16 23 N -0.60 -4.42 5.23 -319.30 -1.67 -6.09 16 24 H 0.43 0.99 8.87 -92.70 -0.82 0.17 16 25 C 0.56 10.34 7.71 85.22 0.66 11.00 16 26 O -0.59 -15.81 17.89 -5.14 -0.09 -15.90 16 27 C -0.30 -5.59 6.48 23.45 0.15 -5.44 16 28 S 0.23 4.35 22.27 -56.49 -1.26 3.09 16 29 H 0.05 1.41 7.18 -2.39 -0.02 1.39 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.40 7.18 -2.39 -0.02 1.38 16 32 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.37 15.88 4.71 -92.71 -0.44 15.44 16 35 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 7.12 6.72 -92.71 -0.62 6.50 16 39 H 0.17 2.35 7.98 -2.91 -0.02 2.32 16 40 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 41 H 0.23 -2.33 8.06 -2.91 -0.02 -2.36 16 Total: -1.00 -84.84 362.71 -0.16 -85.00 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -0.84 Total: 16.93 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.78 Total: 3.68 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.59 Total: -123.34 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.16 Total: -32.58 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.26 Total: 3.09 kcal Total: -84.84 -0.16 -85.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319206370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.531 kcal (2) G-P(sol) polarization free energy of solvation -84.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds