Wall clock time and date at job start Tue Mar 31 2020 18:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38321 * 119.87460 * 269.72456 * 3 2 1 5 5 C 1.38026 * 120.11501 * 179.76368 * 4 3 2 6 6 C 1.39328 * 119.87919 * 0.50865 * 5 4 3 7 7 C 1.48407 * 120.11917 * 179.72438 * 6 5 4 8 8 N 1.31496 * 125.65114 * 180.02562 * 7 6 5 9 9 N 1.40436 * 106.70823 * 179.97438 * 8 7 6 10 10 H 0.97002 * 126.74059 * 179.97438 * 9 8 7 11 11 C 1.34516 * 106.52088 * 0.02562 * 9 8 7 12 12 S 1.76201 * 125.85473 * 179.97438 * 11 9 8 13 13 O 1.42104 * 104.27490 * 206.07038 * 12 11 9 14 14 O 1.42101 * 104.27645 * 333.92443 * 12 11 9 15 15 C 1.81390 * 104.44975 * 90.00042 * 12 11 9 16 16 C 1.52999 * 109.47342 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47452 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00246 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46902 * 59.99684 * 21 19 17 23 23 H 1.48500 * 109.47487 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46986 * 300.00174 * 21 19 17 25 25 N 1.30686 * 108.29254 * 359.74783 * 11 9 8 26 26 C 1.39331 * 119.75942 * 359.74496 * 6 5 4 27 27 C 1.38022 * 119.87963 * 0.02562 * 26 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 33 33 H 1.07996 * 119.94405 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.05677 * 180.25166 * 5 4 3 35 35 H 1.09003 * 109.47293 * 299.99995 * 15 12 11 36 36 H 1.09000 * 109.47719 * 60.00232 * 15 12 11 37 37 H 1.09003 * 109.46865 * 299.99548 * 16 15 12 38 38 H 1.09002 * 109.47400 * 59.99769 * 16 15 12 39 39 H 0.97002 * 119.99797 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.05710 * 179.97438 * 26 6 5 41 41 H 1.08000 * 119.93949 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2675 2.0685 -1.1994 5 6 2.7230 3.3714 -1.2052 6 6 2.9560 4.0306 -0.0001 7 6 3.4516 5.4295 -0.0001 8 7 3.7076 6.1520 1.0684 9 7 4.1517 7.4038 0.6124 10 1 4.4191 8.1591 1.1593 11 6 4.1324 7.3503 -0.7315 12 16 4.5941 8.6541 -1.8231 13 8 3.8593 8.3933 -3.0111 14 8 4.3716 9.8378 -1.0690 15 6 6.3684 8.4024 -2.1039 16 6 6.8942 9.4858 -3.0476 17 6 8.3684 9.2771 -3.2804 18 1 8.8794 8.4542 -2.8027 19 6 9.0649 10.1366 -4.1032 20 7 8.4426 11.1384 -4.6854 21 14 10.8924 9.8783 -4.3913 22 1 11.1136 8.5416 -4.9991 23 1 11.4027 10.9298 -5.3073 24 1 11.6139 9.9584 -3.0957 25 7 3.7171 6.1638 -1.0889 26 6 2.7225 3.3716 1.2051 27 6 2.2625 2.0703 1.1993 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0911 1.5550 -2.1329 34 1 2.9023 3.8776 -2.1423 35 1 6.8986 8.4606 -1.1533 36 1 6.5301 7.4214 -2.5506 37 1 6.3642 9.4280 -3.9983 38 1 6.7327 10.4667 -2.6005 39 1 8.9328 11.7433 -5.2640 40 1 2.9019 3.8779 2.1421 41 1 2.0815 1.5584 2.1329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321009324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:50 Heat of formation + Delta-G solvation = 22.713330 kcal Electronic energy + Delta-G solvation = -25023.437557 eV Core-core repulsion = 21224.888523 eV Total energy + Delta-G solvation = -3798.549034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37541 -39.56957 -36.99494 -35.83283 -34.91123 -34.06716 -32.85293 -31.97709 -31.34700 -31.12745 -29.36050 -25.82123 -24.88336 -24.12200 -22.60293 -22.18268 -21.58857 -20.54773 -19.55586 -18.41119 -17.08362 -16.70817 -16.41684 -16.13544 -15.72683 -15.52289 -15.40966 -15.24968 -14.62314 -14.19565 -13.98500 -13.68682 -13.60201 -13.54396 -12.96203 -12.74411 -12.62578 -12.30603 -11.97224 -11.95996 -11.86567 -11.63818 -11.56214 -11.26187 -11.15452 -11.14982 -11.13477 -10.74398 -10.60692 -10.52729 -10.51353 -10.43685 -9.85890 -9.35639 -9.19111 -8.68096 -8.58584 -6.21330 -4.27989 0.00921 0.51701 1.06919 1.17083 2.22717 2.50627 2.83439 3.23258 3.28650 3.30103 3.61422 3.81187 3.90697 3.96719 4.30153 4.42509 4.49794 4.61487 4.76798 4.89926 4.98898 5.14119 5.16256 5.19811 5.28503 5.38488 5.46229 5.49804 5.55941 5.62279 5.71995 5.77886 5.81246 5.86019 6.19422 6.22499 6.23752 6.32983 6.51044 6.67631 7.14294 7.19496 7.49298 7.70835 8.03433 8.74706 9.37422 10.89302 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.002325 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.609749 B =12040.887325 C =12760.115906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.068 4.068 4 C -0.121 4.121 5 C -0.070 4.070 6 C -0.021 4.021 7 C 0.256 3.744 8 N -0.276 5.276 9 N -0.418 5.418 10 H 0.455 0.545 11 C -0.226 4.226 12 S 2.481 3.519 13 O -0.899 6.899 14 O -0.927 6.927 15 C -0.547 4.547 16 C 0.027 3.973 17 C -0.523 4.523 18 H 0.063 0.937 19 C 0.060 3.940 20 N -0.888 5.888 21 Si 0.903 3.097 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 N -0.444 5.444 26 C -0.080 4.080 27 C -0.123 4.123 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.267 0.733 40 H 0.131 0.869 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 -18.235 11.562 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.068 4.068 4 C -0.139 4.139 5 C -0.090 4.090 6 C -0.023 4.023 7 C -0.024 4.024 8 N -0.107 5.107 9 N -0.140 5.140 10 H 0.303 0.697 11 C -0.581 4.581 12 S 2.653 3.347 13 O -0.895 6.895 14 O -0.923 6.923 15 C -0.683 4.683 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.082 0.918 19 C -0.143 4.143 20 N -0.525 5.525 21 Si 0.730 3.270 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.201 1.201 25 N -0.171 5.171 26 C -0.100 4.100 27 C -0.141 4.141 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.149 0.851 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.032 -17.897 11.584 24.987 hybrid contribution 1.546 0.025 0.604 1.660 sum -11.486 -17.872 12.188 24.493 Atomic orbital electron populations 1.21754 0.94523 1.01796 1.02422 1.20591 0.96323 0.92432 1.03105 1.20084 0.97290 0.96280 0.93193 1.21001 1.00573 0.94475 0.97880 1.21315 0.95677 0.94186 0.97835 1.17393 1.03054 0.87276 0.94608 1.22661 0.98592 0.95534 0.85647 1.78049 1.19430 0.91284 1.21943 1.47816 1.47920 1.13002 1.05261 0.69667 1.38784 1.08890 1.13691 0.96775 1.07435 0.80840 0.72520 0.73881 1.93602 1.70162 1.83160 1.42623 1.93584 1.86161 1.40863 1.71737 1.30164 1.14504 1.12316 1.11280 1.19112 0.98398 0.90727 0.92997 1.20894 0.92096 1.13609 1.29690 0.91835 1.25053 0.99037 0.94912 0.95321 1.69933 1.36673 1.15551 1.30365 0.86486 0.84214 0.78065 0.78268 1.19962 1.21020 1.20056 1.70493 1.15403 1.00605 1.30576 1.21165 0.97156 0.94534 0.97170 1.20911 1.00983 0.94431 0.97811 0.92319 0.92357 0.92505 0.90882 0.90742 0.85271 0.84176 0.85418 0.84673 0.94068 0.94264 0.92298 0.85136 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.46 16 2 C -0.09 -0.52 6.06 -27.88 -0.17 -0.69 16 3 C -0.07 -0.57 5.14 -104.56 -0.54 -1.11 16 4 C -0.12 -1.13 9.68 -39.63 -0.38 -1.51 16 5 C -0.07 -0.82 9.69 -39.25 -0.38 -1.20 16 6 C -0.02 -0.27 5.88 -104.90 -0.62 -0.88 16 7 C 0.26 3.92 7.78 -156.62 -1.22 2.71 16 8 N -0.28 -4.04 12.43 32.10 0.40 -3.64 16 9 N -0.42 -5.68 7.43 30.18 0.22 -5.46 16 10 H 0.45 4.62 8.96 -182.34 -1.63 2.99 16 11 C -0.23 -3.52 7.81 -90.70 -0.71 -4.23 16 12 S 2.48 41.40 5.33 -107.50 -0.57 40.82 16 13 O -0.90 -17.80 17.93 -57.54 -1.03 -18.83 16 14 O -0.93 -16.52 17.94 -57.54 -1.03 -17.55 16 15 C -0.55 -9.39 5.92 37.16 0.22 -9.17 16 16 C 0.03 0.63 4.98 -27.88 -0.14 0.49 16 17 C -0.52 -13.56 9.11 -34.44 -0.31 -13.87 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 21 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 N -0.44 -7.40 10.81 -11.57 -0.13 -7.52 16 26 C -0.08 -0.86 9.68 -39.25 -0.38 -1.24 16 27 C -0.12 -1.08 9.68 -39.63 -0.38 -1.46 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.67 7.84 -52.48 -0.41 1.26 16 35 H 0.13 1.85 8.14 -51.92 -0.42 1.42 16 36 H 0.14 2.12 8.14 -51.92 -0.42 1.70 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.13 1.31 7.83 -52.49 -0.41 0.90 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -34.05 372.73 -12.19 -46.24 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.64 Total: 0.47 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -4.74 Total: -31.12 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 1.23 Total: -41.00 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.06 Total: -36.38 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 41.40 SS G_CDS: -0.57 Total: 40.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.05 -12.19 -46.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321009324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.949 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds