Wall clock time and date at job start Tue Mar 31 2020 18:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38321 * 119.87460 * 269.72456 * 3 2 1 5 5 C 1.38026 * 120.11501 * 179.76368 * 4 3 2 6 6 C 1.39328 * 119.87919 * 0.50865 * 5 4 3 7 7 C 1.48407 * 120.11917 * 179.72438 * 6 5 4 8 8 N 1.31496 * 125.65114 * 180.02562 * 7 6 5 9 9 N 1.40436 * 106.70823 * 179.97438 * 8 7 6 10 10 H 0.97002 * 126.74059 * 179.97438 * 9 8 7 11 11 C 1.34516 * 106.52088 * 0.02562 * 9 8 7 12 12 S 1.76201 * 125.85473 * 179.97438 * 11 9 8 13 13 O 1.42104 * 104.27490 * 206.07038 * 12 11 9 14 14 O 1.42101 * 104.27645 * 333.92443 * 12 11 9 15 15 C 1.81390 * 104.44975 * 90.00042 * 12 11 9 16 16 C 1.52999 * 109.47342 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47452 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00246 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46902 * 59.99684 * 21 19 17 23 23 H 1.48500 * 109.47487 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46986 * 300.00174 * 21 19 17 25 25 N 1.30686 * 108.29254 * 359.74783 * 11 9 8 26 26 C 1.39331 * 119.75942 * 359.74496 * 6 5 4 27 27 C 1.38022 * 119.87963 * 0.02562 * 26 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 33 33 H 1.07996 * 119.94405 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.05677 * 180.25166 * 5 4 3 35 35 H 1.09003 * 109.47293 * 299.99995 * 15 12 11 36 36 H 1.09000 * 109.47719 * 60.00232 * 15 12 11 37 37 H 1.09003 * 109.46865 * 299.99548 * 16 15 12 38 38 H 1.09002 * 109.47400 * 59.99769 * 16 15 12 39 39 H 0.97002 * 119.99797 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.05710 * 179.97438 * 26 6 5 41 41 H 1.08000 * 119.93949 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2675 2.0685 -1.1994 5 6 2.7230 3.3714 -1.2052 6 6 2.9560 4.0306 -0.0001 7 6 3.4516 5.4295 -0.0001 8 7 3.7076 6.1520 1.0684 9 7 4.1517 7.4038 0.6124 10 1 4.4191 8.1591 1.1593 11 6 4.1324 7.3503 -0.7315 12 16 4.5941 8.6541 -1.8231 13 8 3.8593 8.3933 -3.0111 14 8 4.3716 9.8378 -1.0690 15 6 6.3684 8.4024 -2.1039 16 6 6.8942 9.4858 -3.0476 17 6 8.3684 9.2771 -3.2804 18 1 8.8794 8.4542 -2.8027 19 6 9.0649 10.1366 -4.1032 20 7 8.4426 11.1384 -4.6854 21 14 10.8924 9.8783 -4.3913 22 1 11.1136 8.5416 -4.9991 23 1 11.4027 10.9298 -5.3073 24 1 11.6139 9.9584 -3.0957 25 7 3.7171 6.1638 -1.0889 26 6 2.7225 3.3716 1.2051 27 6 2.2625 2.0703 1.1993 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0911 1.5550 -2.1329 34 1 2.9023 3.8776 -2.1423 35 1 6.8986 8.4606 -1.1533 36 1 6.5301 7.4214 -2.5506 37 1 6.3642 9.4280 -3.9983 38 1 6.7327 10.4667 -2.6005 39 1 8.9328 11.7433 -5.2640 40 1 2.9019 3.8779 2.1421 41 1 2.0815 1.5584 2.1329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321009324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:49 Heat of formation + Delta-G solvation = 0.536063 kcal Electronic energy + Delta-G solvation = -25024.399235 eV Core-core repulsion = 21224.888523 eV Total energy + Delta-G solvation = -3799.510712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.54067 -40.31523 -38.46492 -37.31908 -35.92415 -35.63658 -33.91076 -33.19437 -33.00767 -31.91528 -30.11826 -27.66939 -25.66578 -25.28769 -23.64803 -23.20563 -22.89077 -21.40523 -20.78526 -19.79273 -18.75176 -17.79549 -17.57330 -17.53026 -17.04056 -16.67231 -16.49966 -16.32363 -16.13791 -15.25614 -14.86585 -14.60476 -14.47296 -14.32729 -14.23100 -14.11659 -13.77478 -13.47214 -13.41636 -13.37315 -13.00010 -12.91072 -12.84662 -12.83022 -12.26930 -12.24871 -12.21928 -11.85449 -11.81567 -11.78256 -11.75811 -11.60845 -11.59189 -11.14246 -10.60377 -9.95212 -9.50433 -8.23605 -6.36547 -1.39827 -0.50933 0.01779 0.41347 1.12833 1.43168 1.45264 1.47214 1.53809 1.55576 2.39772 2.55117 2.66132 2.81075 2.86043 3.11013 3.30896 3.84230 3.89204 3.89837 4.03361 4.04713 4.32272 4.42343 4.48593 4.55938 4.60219 4.63291 4.68521 4.68850 5.01608 5.04425 5.14331 5.15513 5.27434 5.29010 5.35192 5.40615 5.44609 5.55209 5.65221 5.70637 5.94881 6.06190 6.34436 6.76132 7.33195 8.87914 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.002325 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.609749 B =12040.887325 C =12760.115906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.061 4.061 4 C -0.122 4.122 5 C -0.085 4.085 6 C -0.051 4.051 7 C 0.249 3.751 8 N -0.277 5.277 9 N -0.404 5.404 10 H 0.468 0.532 11 C -0.230 4.230 12 S 2.516 3.484 13 O -0.934 6.934 14 O -0.939 6.939 15 C -0.542 4.542 16 C 0.018 3.982 17 C -0.537 4.537 18 H 0.077 0.923 19 C 0.001 3.999 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.264 1.264 25 N -0.466 5.466 26 C -0.084 4.084 27 C -0.120 4.120 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.018 0.982 38 H 0.023 0.977 39 H 0.267 0.733 40 H 0.134 0.866 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.973 -20.899 13.193 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.062 4.062 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.054 4.054 7 C -0.031 4.031 8 N -0.108 5.108 9 N -0.129 5.129 10 H 0.320 0.680 11 C -0.587 4.587 12 S 2.690 3.310 13 O -0.930 6.930 14 O -0.935 6.935 15 C -0.678 4.678 16 C -0.022 4.022 17 C -0.577 4.577 18 H 0.096 0.904 19 C -0.198 4.198 20 N -0.569 5.569 21 Si 0.794 3.206 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.189 1.189 25 N -0.194 5.194 26 C -0.104 4.104 27 C -0.138 4.138 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.152 0.848 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.748 -20.538 13.221 27.552 hybrid contribution 1.354 0.743 0.174 1.554 sum -11.394 -19.796 13.394 26.478 Atomic orbital electron populations 1.21754 0.94130 1.02595 1.01978 1.20661 0.96493 0.90726 1.04374 1.20447 0.95684 0.97420 0.92650 1.21251 0.99820 0.93590 0.99355 1.21343 0.96767 0.95293 0.97101 1.17593 1.05219 0.86668 0.95934 1.23167 0.98268 0.96493 0.85167 1.78025 1.19593 0.91380 1.21808 1.47835 1.47000 1.13314 1.04741 0.67979 1.38162 1.09969 1.13265 0.97310 1.06140 0.79946 0.71940 0.73012 1.93556 1.70960 1.83839 1.44650 1.93560 1.86210 1.41837 1.71899 1.29999 1.15186 1.10961 1.11652 1.18968 0.97745 0.92101 0.93343 1.21419 0.93500 1.13593 1.29171 0.90448 1.26013 1.03822 0.94725 0.95286 1.70069 1.38532 1.16765 1.31495 0.85428 0.78675 0.78076 0.78468 1.19070 1.21170 1.18858 1.70477 1.16097 1.01131 1.31698 1.21288 0.97243 0.95366 0.96495 1.21242 0.99727 0.93627 0.99195 0.90941 0.93050 0.92751 0.89412 0.89767 0.83325 0.85396 0.82216 0.82974 0.96390 0.95842 0.92365 0.84781 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.53 16 2 C -0.09 -0.75 6.06 29.85 0.18 -0.57 16 3 C -0.06 -0.88 5.14 -19.82 -0.10 -0.99 16 4 C -0.12 -2.11 9.68 22.24 0.22 -1.89 16 5 C -0.08 -1.98 9.69 22.48 0.22 -1.76 16 6 C -0.05 -1.32 5.88 -20.04 -0.12 -1.43 16 7 C 0.25 7.59 7.78 137.47 1.07 8.66 16 8 N -0.28 -7.89 12.43 -52.35 -0.65 -8.54 16 9 N -0.40 -10.60 7.43 -58.44 -0.43 -11.04 16 10 H 0.47 8.92 8.96 -213.10 -1.91 7.01 16 11 C -0.23 -7.07 7.81 180.38 1.41 -5.66 16 12 S 2.52 84.26 5.33 -56.49 -0.30 83.95 16 13 O -0.93 -37.89 17.93 -127.65 -2.29 -40.18 16 14 O -0.94 -33.36 17.94 -127.65 -2.29 -35.65 16 15 C -0.54 -18.33 5.92 71.98 0.43 -17.91 16 16 C 0.02 0.84 4.98 29.85 0.15 0.99 16 17 C -0.54 -27.81 9.11 25.60 0.23 -27.58 16 18 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 19 C 0.00 0.04 5.46 84.65 0.46 0.50 16 20 N -0.93 -53.80 13.29 21.45 0.28 -53.51 16 21 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 N -0.47 -15.59 10.81 -190.52 -2.06 -17.65 16 26 C -0.08 -1.70 9.68 22.48 0.22 -1.48 16 27 C -0.12 -1.81 9.68 22.24 0.22 -1.60 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.13 3.19 7.84 -2.91 -0.02 3.16 16 35 H 0.16 4.33 8.14 -2.39 -0.02 4.31 16 36 H 0.15 4.64 8.14 -2.39 -0.02 4.62 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.13 2.53 7.83 -2.91 -0.02 2.51 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -73.85 372.73 -1.28 -75.13 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -0.85 Total: 15.13 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 5.29 Total: -51.25 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -2.86 Total: -90.74 kcal Atomic # 8 Polarization: -71.25 SS G_CDS: -4.58 Total: -75.83 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 84.26 SS G_CDS: -0.30 Total: 83.95 kcal Total: -73.85 -1.28 -75.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321009324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.663 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds